Array 1 200479-201088 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQGY01000115.1 Escherichia coli strain LVSTRB156 NODE_873_length_217957_cov_69.320366, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 200479 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 200540 29 100.0 56 ............................. ANNNNNNNNNNNNNNNNNNNNNNNNNATTCCCGCAGCGCCTGCCGCAGTATTCACC 200625 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 200686 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 200747 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 200808 29 93.1 40 ...........................NN NNNNNNNNGGATCACAAGGGCGGCTATCAGGGTGGACGGA 200877 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 200938 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 200999 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 201060 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ======================================================== ================== 10 29 99.0 36 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACAGAGTTCCCCGCGCCAGCGGGGATAAACCGCGAATTTTGCACACTACGTCGCTGAGGGTAAAGAGTTCCCCGCGCCAGCGGGGATAAACCGCATTGCCTTTGCAGCGTCTTTCCGATCATTCAGAGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNACGTGAGATACGCCTCCCAGCGGCGCTCGGTGAGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCTCTACTGACGTTCCTGAACAAGAAGAT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95816-94672 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQGY01000125.1 Escherichia coli strain LVSTRB156 NODE_1162_length_105592_cov_65.124031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 95815 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 95754 29 100.0 42 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCNNNNNNNNNNGG 95683 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 95621 29 100.0 38 ............................. CGATGATGTAATAATTAGAGCAGAATCCANNNNNNNNN 95554 29 96.6 32 N............................ ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95493 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 95432 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 95371 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 95310 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95249 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95188 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95127 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95066 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95005 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 94944 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94883 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 94822 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 94761 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 94700 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 19 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCGCTCAGTGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAAACATTTGCGCGTTACTGCGTGGATTTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGATCGCGCAGCGTCCCGACATCCTGCCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCACGACGCCCGCCGCACGTTCGGCAGTGTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATACCGATTCATAACGGCGGAAATGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCCCGCGCCAGCGGGGATAAACCGACGAGGTACAGTGGTGCAAAAACAAATTATAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96741-96091 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQGY01000125.1 Escherichia coli strain LVSTRB156 NODE_1162_length_105592_cov_65.124031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 96740 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 96679 29 100.0 36 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGNNNNNN 96614 29 86.2 32 NNNN......................... GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 96553 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 96492 29 100.0 39 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGNNNNNNNNNN 96424 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 96363 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 96302 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 96241 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 96180 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 96119 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 11 29 98.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GAATACCGATTCATAACGGCGGAAATGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCCCGCGCCAGCGGGGATAAACCGACGAGGTACAGTGGTGCAAAAACAAATTATAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCCCGGCGTCAGCAGATCAGCGGCCTGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTACGCCATGTGGATTAGTCCGGCGTTTCNNNNNNNNNNGGGTGTTCCCCGCGCCAGCGGGGATAAACCTGGCCTGGATTTTTTCGAACACCACCCGCTCGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //