Array 1 19509-24509 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKA01000019.1 Erwinia amylovora strain CTST01-1 NODE_13_length_69220_cov_56.5512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 19509 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 19570 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 19631 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 19692 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 19753 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 19814 29 100.0 32 ............................. CAATATCTTTTGTTTGCGTATAGATATCCTGC 19875 29 100.0 32 ............................. GTCAGGGAACTGACCAAAACCAGCTTTGAAAT 19936 29 100.0 32 ............................. TCCTCCTGCAGGCGGAGCATGAGGATAAAGTC 19997 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 20058 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 20119 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 20180 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 20241 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 20302 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 20363 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 20424 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 20485 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 20546 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 20607 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 20668 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 20729 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 20790 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 20851 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 20912 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 20973 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 21034 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 21095 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 21156 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 21217 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 21278 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 21339 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 21400 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 21461 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 21522 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 21583 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 21644 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 21705 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 21766 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 21827 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 21888 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 21949 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 22010 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 22071 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 22132 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 22193 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 22254 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 22315 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 22376 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 22437 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 22498 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 22559 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 22620 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 22681 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 22742 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 22803 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 22864 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 22925 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 22986 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 23047 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 23108 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 23169 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 23230 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 23291 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 23352 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 23413 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 23474 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 23535 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 23596 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 23657 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 23718 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 23779 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 23840 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 23901 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 23962 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 24054 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 24115 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 24176 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 24237 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 24298 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 24359 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 24420 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 24481 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 82 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33549-36935 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKA01000019.1 Erwinia amylovora strain CTST01-1 NODE_13_length_69220_cov_56.5512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33549 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 33610 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 33671 29 100.0 32 ............................. TACGTCAGCGGCATTATAAGGATTTACACGGA 33732 29 100.0 32 ............................. CCTTCAGGCCGCTGGATAGATGCTAACCCACC 33793 29 100.0 32 ............................. CCGGCACCAAATGCTTATCACTGCCAGCGGCG 33854 29 100.0 32 ............................. ATTTCTGGATTAACACTCAGGCGGCTCATGAC 33915 29 100.0 32 ............................. GTCATTCATACGGGCTATACCGTCCTCCAGAT 33976 29 100.0 32 ............................. GTCAGCAGCTGTAATAATGCGCACCTTTTCCC 34037 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 34098 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 34159 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 34220 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 34281 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 34342 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 34403 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 34464 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 34525 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 34586 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 34647 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 34708 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 34769 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 34830 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 34891 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 34952 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 35014 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 35075 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 35136 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 35197 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 35258 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 35319 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 35380 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 35441 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 35502 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 35563 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 35624 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 35685 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 35746 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 35807 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 35869 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 35930 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 35991 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 36052 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 36113 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 36174 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 36235 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 36296 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 36358 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 36419 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 36480 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 36541 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 36602 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 36663 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 36724 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 36785 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 36846 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 36907 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 56 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46395-46723 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQKA01000019.1 Erwinia amylovora strain CTST01-1 NODE_13_length_69220_cov_56.5512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46395 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 46455 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 46515 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 46575 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 46635 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 46696 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //