Array 1 690954-692040 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP066708.1 Staphylococcus pseudintermedius strain HSP125 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    690954	    36	 100.0	    30	....................................	TACGTGGGTTGATGCGACACAATCGTCTAA	
    691020	    36	 100.0	    29	....................................	GCAGTTGGTGCCTTGATGATTGCTGAGCC 	
    691085	    36	 100.0	    30	....................................	GTTTATTTTTTACTGAATGAAGAAGATACA	
    691151	    36	 100.0	    29	....................................	TGATGGATTAGACTAAAAGTGGCAGCGAT 	
    691216	    36	 100.0	    30	....................................	ATCATTTCTGGTTTATTACCTTCGCTGATT	
    691282	    36	 100.0	    29	....................................	ACTGAATTAAAAGTAATTCGATTAGAAAG 	
    691347	    36	 100.0	    29	....................................	TAATAACCTCTTCTATCACACGTTGTGCT 	
    691412	    36	 100.0	    30	....................................	ACAAGAAAGCACAGATTATCAACTTATTGC	
    691478	    36	 100.0	    30	....................................	ATGGCTCCCTAAAGGTTCACGCGTTATTAG	
    691544	    36	 100.0	    30	....................................	TGTCATTTGTTGAAAGTGTTGAGTACTTGC	
    691610	    36	 100.0	    29	....................................	GAAGTATTGGGTTTATTGGCCGGTCCAAT 	
    691675	    36	 100.0	    30	....................................	ATATTGAGCATATTCAATTTGTTTTTCAGT	
    691741	    36	  97.2	    30	............................A.......	CTGTGGAATATTTTGAGTAACTTCTGTTGC	
    691807	    36	  94.4	    30	.............A..............A.......	CAACGTGCCATTTGTCATGTTTTTACGCGT	
    691873	    36	  97.2	    29	............................A.......	AAACCGAACGCGCTTATATGCTTTTACGT 	
    691938	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    692004	    35	  88.9	     0	..........................-.CA.C....	|                             	TC [692037]
==========	======	======	======	====================================	==============================	==================
        17	    36	  98.5	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTGCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCCTTCAAAATAAATAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTACGAATCTCTCGATTGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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