Array 1 16315-14273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYB010000011.1 Streptomyces sp. McG2 NODE_11_length_30495_cov_40.9942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16314 29 100.0 32 ............................. TGCTGGCCGATCTGGTGCTGCCAGATGGCCTT 16253 29 96.6 32 ............................C CCGTGGGCCGGGATGGCGTCCCTGCCGTACCG 16192 29 96.6 32 ............................C CCCCTCCGGGACCCTCCGGAGGGGGCTTCTGG 16131 29 100.0 32 ............................. TCGATCCCGATCAACGAGCTGTCCGCCGCCGC 16070 29 96.6 32 ............................C CCGGTCAGCATCGCGGTGAAGACCTGTTCCTC 16009 29 100.0 32 ............................. TACCTGCGCCCCTTCACCACGCTCGCCGTGGG 15948 29 100.0 32 ............................. TTTCCCGGCGGCTTGCGGTGCAGGCTGCGGGG 15887 29 96.6 32 ............................C CGCAGGTCAGCGACCGGTACGCCGCCCGTACG 15826 29 100.0 32 ............................. GGCATCCCGCAGCCTGACCTGGAGGTGCGGCC 15765 29 100.0 32 ............................. AAAAATCCAGGCCTGGCGGTGGCGCGCTGCCC 15704 29 96.6 32 ...........G................. ACCTCGTGGGCTTCCTCTTCACCGCTCAGGAC 15643 29 100.0 32 ............................. GCGTACCAGCAGCTCGCCGCCGAGGGGTACGT 15582 29 100.0 32 ............................. CCGTCCCGGTACGAGAGGGGACGCGGATGAGC 15521 29 96.6 32 ............................C CTCGCCGGCAGTAGGCGGCCACCGTGATCAGC 15460 29 96.6 32 ............C................ AGCCCGGCCACGTTCCGCTGGCACCTCGACAA 15399 29 96.6 32 ............C................ GCGGCCGTCACCGTGGTGCCGAAGATCAAGAC 15338 29 96.6 32 ............C................ GGATCGTCGCCGACCTGGACCTGCTGCCCGCG 15277 29 96.6 32 ............C................ TGGTCTTCGGGCGAGCAGCCGCCTCCCGGGTG 15216 29 93.1 32 ............C...............C GCGAACCTCGCCCCGTATCTACTGCCCGAGCT 15155 29 96.6 32 ............C................ TGCGGACCCTGGGGGCGCATCTTGAGATCGAG 15094 29 93.1 32 ............C...............C ATGCCCGCGCTGGGCGGTGACGCCGAGGAGCT 15033 29 96.6 32 ............C................ GTCCCCCGCCCGTGGCGACGCTCGATGAGCCC 14972 29 96.6 32 ............C................ CGGCTGGACACGGCCTCCGCCCAGATCGCGCA 14911 29 89.7 32 ............CC..............C AGCGCCTTGTAGATCATGTGCTCCACGGCGTT 14850 29 86.2 32 ...........GCC..............C CAGACGGTCTCGCCGCGCAGCGCGTTCAGGGC 14789 29 93.1 32 ............CA............... ATCTCCGAGACCGTGCCGAGGACGTTGCCGAG 14728 29 89.7 32 ............CA..............C TGTCAGTCGAAGGACCGGTTGCCCCACCACAG 14667 29 93.1 32 ............CA............... GCGCGGGCATCCTGTGAGCCGCCTCCGCCCCG 14606 29 93.1 32 ............CA............... AGGGACGGCCCGCGGTTCGTGCGTCGGCAGGT 14545 29 93.1 32 ............CA............... CCCGCCGCTGCTGACGGCCCGTTCGAGAAGCT 14484 29 93.1 32 ............CA............... ATGTCCGGCACCGGCATCCACACCGCCATCGG 14423 29 93.1 32 ............CA............... TTCTTGTGCACAGGGGTGTCGCACTGGCGCCC 14362 29 89.7 32 ............CA..............C GGCGGTGAGGCGGACTACTTCAAGGGTGTGCC 14301 29 93.1 0 ............C...............C | ========== ====== ====== ====== ============================= ================================ ================== 34 29 95.6 32 GTCGGCCCCGCATGCGCGGGGATGCTCCG # Left flank : AGCTCCTCGTCGTCCATGCCCGGACAACGCGCGGACTGATCCGGACACGATCCGGATCAGTCCGGACCGGCGTCCGGATCGTGCCTGGACGCCGGACAGCCATAAGGCCACCCCGAAGGGTGGCCTTATGGCGTCGGCCGACTGTCGAAAGTCTCAAACTGGTGCCGCCGTATCCGGTGGCAGACGACCAGCCCGGGCACCGGCTTTCTACGGGCGACCGCCATCTCCGGTCGTTGGCGGGGCCATGCTGGTGGGCCGGTTCGGCACAGTGCCAGCAGAACCAACAGCCACCTCAGCGAGACGACCAGGCGCGCACCGTCCGGGGATTTGGCAGGTGTGACCCCCTCCGGTTCCGTACGGTAGGCGAGTCTCTCGCGGAGGTCGCGTACGTCGCGATCTCTGAAGACGGCCCCCGCCATTCGCTGCCGGCCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GCGCCGTCCGGGACGTCGGCTCCGAGCCAGCCTGTGGTCATTCGATCGGGGCTCACTTCGGGCCGCTGCGGCAGCTCACCTTCGGGCTCACTGCGCGCGGCGGGGCCGGTGCTGCGGCGGGATCGCGTTTTTGCCCTCAAGGAGCATGATCGCACGGTCCGAGGCCGGAGCGAGGCCCGAACGGGAGGGTCATGCCGCCTTCCTGCGGCCGGGGCCGAGGATCTCCAGCCGGCGGACGGTCTCTCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGCAGCGCGTGCTGGCGGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCAGGCTGGAGGGTGAGGGTCGCGGTGTCTGCGTCGTACTTGACGGCAGTGACGCGCCCAGCGAGGTCGTCGGCGATGTGCGACCACCGGTCCAGCACGCCGCCGGCCGCGACCGGAGCCGTCCAGGCGCGGTCTGCGATGAGCTGCTGGATAGCCTCGCCGAAGGAGACCGGCTCCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCATGCGCGGGGATGCTCCG # Alternate repeat : GTCGGCCCCGCACGCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23455-20691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYB010000011.1 Streptomyces sp. McG2 NODE_11_length_30495_cov_40.9942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 23454 28 100.0 33 ............................ CCGCTCCTCGAAAGTGCTGACCGCCGAGCCCAC 23393 28 100.0 33 ............................ GCGCATGGGTTCCTCGATGCGGCGAGGCCGCGG 23332 28 100.0 34 ............................ GTAGGCCGAGTCATAGCTGATCACCTGGCGTTTC 23270 28 100.0 33 ............................ CGAGCGATGGCCCGGGAATCTCACCTCCCGGGC 23209 28 100.0 6 ............................ GCCATG Deletion [23176] 23168 28 82.1 1 .....................TC.GCC. C Deletion [23140] 23148 28 100.0 33 ............................ GCGCCTGGCCGAGGCCGCGCGCACGATGGTCCA 23087 28 100.0 33 ............................ TGGCTGGCCGACCTCATCGGCCGCAAGAGCCAC 23026 28 100.0 33 ............................ CGTGCCGTGCGCGATGCCCGGCGTGAGCGTGAC 22965 28 100.0 33 ............................ GCTCTCCACGCTGCTCCGACTTTGCGAAGCGCT 22904 28 100.0 33 ............................ GGTACATGACTCTCTGCCGAAGGTACACATCTT 22843 28 100.0 33 ............................ GCTGGCCCACGACAAGGCCGACGTCGGCGCCGC 22782 28 100.0 33 ............................ GTGCTGGACGCAGATCCAGAAGCACCACCCGGA 22721 28 100.0 33 ............................ CTTGCCCAGGTCAGATGGGGTAACAGTCGCCCG 22660 28 100.0 33 ............................ GGCGTCGTGCGGGCCGGGGGCGTTGAGCACGAT 22599 28 100.0 33 ............................ GCGCGGGACGAAAGGAAGCGGCCGACCTTTGTG 22538 28 100.0 33 ............................ CCATCATGGTTGCCGCCCCCTCACTAGTCAGGC 22477 28 100.0 33 ............................ TGCTCCATTTCCGGCCTGTCCGAAACGTCCCCG 22416 28 100.0 33 ............................ CTCCGGCCACCGCCGCCACAGCGAACTGCCGAT 22355 28 100.0 33 ............................ CGCTTGTCCGTGGGGACGGGGCTGCTGTAGATC 22294 28 100.0 33 ............................ TGGGCCTACGCGCCATCGCCGCCGCCGCCAAGG 22233 28 100.0 33 ............................ GTTCTTGAAGGCGTCGGTGGCGGTGGCCCGGGA 22172 28 100.0 33 ............................ CGCAGAGCTGACCCGCCGCGTCCGGGCCCTCAC 22111 28 100.0 33 ............................ TTCAGCATCGACCTCGGCGCCCGTGAGCGCGAT 22050 28 100.0 33 ............................ CGACATCGGCCTGTTCCTGCGGGAGATGAAGAC 21989 28 100.0 33 ............................ GCCCTCGTGCAGGTCCACCCGCCACCCCTGTGC 21928 28 100.0 33 ............................ CGAGCGGAACGGCCGGCGGTCCCCACCCTCACC 21867 28 100.0 33 ............................ GTCGTGGGCGCCGGGGTGGCGGACGCCGATCGA 21806 28 100.0 33 ............................ GAGGCGGACGGCGGGTATCTCGCGCTGTGCCCG 21745 28 100.0 33 ............................ GACAGACGTCGCCAGCGGGAGCAGCAAGTCCCC 21684 28 100.0 33 ............................ GCCCAGTACGGCGCCGGCTACCAGACCGTGCGC 21623 28 96.4 35 ..........................C. GGCGTCGGGCCCCTCTCAGTTGTCCCGCCAGGAGT 21560 28 96.4 33 ..........................C. GCCTCCCACCGTGCGGTGGGGCATCGTGCCGGT 21499 28 96.4 33 ..........................C. GCTGCTCGGCGTGACAGTGGCCGGGCGTAGGCT 21438 28 96.4 32 ..........................C. GACGGGGAGCGCCGGATCGCGGTGTTCTCCAA 21378 28 96.4 33 ..........................C. GTACGCCGCCCTCCTCTACGGCACCTTCGAGCG 21317 28 92.9 33 ...........G..............C. GCCATGCTGAGGCTTGATACCCACCGCCCTATC 21256 28 96.4 33 ..........................C. CGGCCAGCGGCCGGAGGGGAGTGGGGGGTGAGC 21195 28 96.4 33 ..........................C. AGGCATTGCCCAGTTCATTGACGCCACGTGGGA 21134 28 96.4 33 ..........................C. GCCGTCCTCGATCGACTCGCGCACCGCCTGGGC 21073 28 96.4 33 ..........................C. CGGTGTCCTCGACGGTCGCCGATGCCGGCACGG 21012 28 96.4 33 ..........................C. GGCCGACACGTCGACGTCGCCGTAGTCGATGGA A [20990] 20950 28 92.9 33 ...................A......C. GCCGGTGCTCGACGTTGCGGATGCGCTCCTGGA 20889 28 92.9 33 .............G............C. GGCGTACCCGCACCCGGCCCGCGTCGACGCCGC 20828 28 85.7 21 .............G........CA..C. TCAGGATGCGGCCGGGGCCCG Deletion [20780] 20779 28 89.3 33 ..............T...........CG GAAGGTCGGGGAGATGGTCGATCCGGCGTTGCT 20718 28 82.1 0 ....T............A...GC...C. | ========== ====== ====== ====== ============================ =================================== ================== 47 28 97.5 32 GTCGGCCCCGCACCCGCGGGGATGCTTC # Left flank : CGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTAGTCCTCCACCACGGGCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGAGAGGACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTAGGCGAGCCTCTCTCGGAGGTCGCGTACATCGCGATCTCTGAAGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CCGCAACGGAGAGCAGTTGGAGATCACCCTCTAGTACTCCAGCAGGATTTCGCAGTTTGACCTGGTCTTTTCGCCGGGTGGCGGGAGTGTAGCGGGACTCCGGTCGTGCGGGGGCGGTCTCACGGAGACCGCCCCTCGATCGTGCGACAACGCCGCAGGTAGTGACAGCGGCGGGCGACTGCTTGGCGTCGGCGGCGCCAGTTCGACCAGCTCAGCGTGTGGTGTAGTCCCCGGTGTCCACTCAGGTGCGGGGGCTGGGCACGACAAGCTGCCAGGAGTCGCCGAACCTCCGCCACTGTGAGCCCGATGACCCCGGCTGTCCCACCTGTTCCGCCCCCTTTTCCCAGGACTGGTGTGCCATGGCGGTCAGGAAGGCGTGCGCGAGCATGGCCAGAGTGATGTGCCGATGCCAGCCCACGTAGCGGCGGACCTCGTACTGGTCCAGGCCGCACTCGTTCTTCGCGGCCTGGAAGCACTCCTCGATCGCCCAGCGCGCCCCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 27760-26879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYB010000011.1 Streptomyces sp. McG2 NODE_11_length_30495_cov_40.9942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 27759 28 96.4 37 ............T............... GTACGGCGTCACCGAGCCAGGTCGCCGCCTCCACGTC 27694 28 100.0 33 ............................ GGAACTCGGCGTGGAGGACGCCCCGTACAGCGT 27633 28 100.0 33 ............................ CCTCTGCGCCCAGGTCTTGACGGCGGTCATGTC 27572 28 96.4 33 .............G.............. TCCGACTGGTCCACCCACAGCCACATCGGCATC 27511 28 100.0 33 ............................ CACGGTGAACGACGGCGCCGTCTACACCGGCAC 27450 28 89.3 33 ...............A.....T..T... TACGCGCCGCCGCGCCCCCGCCCTCCTCGTGTC 27389 28 92.9 33 .............T..........T... GGTCTGCGCGGTGGTCTCCTTGGCCGCGCTCAG 27328 28 96.4 33 ........................T... GCTGCACTCCGCGCCGGTGGTGGCGAGGATGTC 27267 28 89.3 33 ..T......T..............T... GCAGCTCGGCCTCTGCCGACGCCTGGGCATCGC 27206 28 96.4 33 ........................T... CGAGTCGGGGTTCGTGGCCGCGACGATGAACGG 27145 28 96.4 33 ........................T... GATTCCCGGACCGGTCTCCGCCGGCCCCTGATC 27084 28 92.9 33 .........C.......T.......... GGTCTGGTCCGTTATGAAGGAGGCCGGCGCACG T [27079] 27022 28 96.4 33 ..............T............. CTGTCCATCGTGCGGAGCGCAAGCGCTACAACA 26961 28 100.0 27 ............................ GAGGCCAAGGTCGGCGCCGCGCGTCGC 26906 28 82.1 0 .....T...........T.A...C...T | ========== ====== ====== ====== ============================ ===================================== ================== 15 28 95.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCACGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGACAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGAACTGATCGAGAACGGCGAGTTCTCTGGGATCTTTCAACGGGTGATCAACGACTGACCAAAGTGCTCGGCCGCCGGAAGCGTCGTGGATGGCCAGGCCACGTCGTTCTCGCGCTCGATGGCC # Right flank : CAGGTTCGGAACGGGCGGGCGGCGCCTTGTCGGGTCGGCCCTGGGCGCCTTCGGTATCCGTACGCCCCCTACCGCCCCAGCCCGGCCCGACGCACCGTGGCCCTTCCGGCGCAGCGCCGGACCAGGAGGAGGGGCGGCAATTAACGCCCATCGTGTGGAGCGCAAGCGCTGCAACAGGGCTCTGGGTGGGTGTGGAGTCAGACGTGCGGCTGGTCATGCGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTCGCCGTATGAGTAGGCCGCCAGAGATCACCCGCACCGAGTGCCGGCAGTGCGGTACCGAGATCTACGGGGTGAACGGCCGCTACTCCTGCACCGTGTGCGGCTGGGTCAACCCCTGGTACGAGGGGCACGGCGAGCTGCCCACTGCCAAGGACGACCCTGACTACCCGCGTCGTAGAAACGCCCGCTGAGTTACAGCAGTCCGAGGTCCGTGTCCGGTCGGCACATGCTGCAGGCCTCCACGTCGACGAG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : GTCGGCCCCGCACCCGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 29498-28372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYB010000011.1 Streptomyces sp. McG2 NODE_11_length_30495_cov_40.9942, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29497 28 100.0 33 ............................ CAGGGCCGGGACGATGCCGCACGCCATGACGAC 29436 28 100.0 33 ............................ CCACGACAACCCCGCCCACCTCACCCGCGCCCA 29375 28 100.0 33 ............................ GGCGGCCCGTAGGGCCCGTGACCGAGGTTGACT 29314 28 100.0 33 ............................ GTTCTATCGCCGCATGCGCCTGGCCGCAGTCGG 29253 28 100.0 33 ............................ CCTCTGACCTGCGATGATGCCGCGCGAATGGGG 29192 28 100.0 33 ............................ GGTTCAGGAGTGGGCCGGGTGGCGTACCCGCAA 29131 28 100.0 33 ............................ CAGCGAGCGGGAGGTGTCGGCCCTGGCCCAGCC 29070 28 100.0 33 ............................ TGACGCCGAGCAGGCAGGCCACATCGTCCGGGT 29009 28 100.0 33 ............................ GTCGTACCGCGACGGGCACTTCGGCACGGCGAC 28948 28 100.0 33 ............................ GGACCACCCCAACGACTGCCGCCAGCTCATCAC 28887 28 100.0 33 ............................ GACAGGGCGCCGGATCAGCCGGTAGGCCAACCT 28826 28 100.0 33 ............................ CCACCAGGTTGCTCACGCGCTGTGTGCGCGGAG 28765 28 100.0 33 ............................ CGTCACCGTCGCCACCATCCGCACCTGGTGCCG 28704 28 100.0 33 ............................ GCCGACGGGGGCGTCCTCGCGGGTGCGCACGGG 28643 28 100.0 33 ............................ CAGGACCCGGTCGTACAGCGGCGCGATCGGCGC 28582 28 100.0 33 ............................ CGGATACGGCGACACCCGCACCCACAGCGCCTC 28521 28 100.0 33 ............................ GGGGTTCGATGGTCTGAAGAAGCGCCTCACCGG 28460 28 96.4 33 ........................T... GTACCTCCACCCCGAGGACCCGGACCTGCCGAC 28399 28 89.3 0 ..........T.........A...T... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CTGGAATGCAGGCGTTGCCTTACCAAGATCGTGGACAGCGCATAGCCACGCAAACAACCTGCGGCCCTGACCCGGACCACCGGACACCTCGTCCAGCAGGCCCCGTGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAAACCCCTAACGGACCTTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACAACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCTACGGCAGGCGCCCGCTCTACGCGGTCACGCACGCCGCGCTCCCTGCCACTCGCTGCCCGGCCCATGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGCTAACCTCCCAGGTCAGCAAGT # Right flank : CCAGTAGTCGTTCTCGGTGAACTCCCAGTCGGTGTCGGCCCCGCATGTCGGCGTACGGACTTTTCTCCCCGGTGGCGTACGGACGAACGTCCCCAGTTCTGGCCACGGGCAGCGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCACGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGACAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGAACTGATCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1779-1460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYB010000799.1 Streptomyces sp. McG2 NODE_1121_length_2407_cov_6.44211, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================================== ================== 1778 24 79.2 67 ..A.G...A.A....C........ AATCAGCCCGGCCAAAACCCAGCTCAGCCAGAACCCAGCCCCGCCAAAACCCAGCCCGGCCGAAACC A,T [1763,1772] 1685 24 100.0 46 ........................ TCTTTGACCGCCCCGGTCGAACGGCCCGCACAGCCCGGCAAACCCC 1615 24 100.0 40 ........................ TCGTGAGCCGGCACGGAAAGCCGGACAGCACCCCCACCGA 1551 24 95.8 43 ...............C........ CCTCCATGACCGGCACGGTCAAGGGGCGCCCCCGCCAAGCGAA 1484 24 83.3 0 .......C.....A.A.....G.. | T [1462] ========== ====== ====== ====== ======================== =================================================================== ================== 5 24 91.7 49 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : ACGCCGACAAGGACGCAGGCCAGGGGAACGACTCAAGGAACGGTGCCGATGCCCCCGACACCGGGGACAAGGGCAACGGTTCCGGCGCCTCCGGCGGCTCCAGCTCCTCCGGCGGCGGTGGCGGCTCCGCCCCCACCGAAGACTCCGACGGGGACGCCAAACCCCCGTCCGGCGCCCACCGCTACCGCAACGGCGAGAACGCCAAATGCCTGGCCGCCCCGTTCAACAGCCCACCCACCACCGCCGCCTGCAACGGCTCCGGCACGGTCTGGGCCTTCCGCCCCCTCCCGGACGGCTCCTTCGAGATCGTCCACGAGTCGGGCCGCTCCTGCCTCTCCTCCGGCGCCGGAGGCACCCTGCTCCTCTCCTGCAACCAGGCCGAAAGCCGCCGCTGGCGCACCGGCCCAGAAGGCACCCTGAAAAGCGTAGGAACCGGCGGCTGCCTCGGCACAGTCAACGGCTCCCGCATCACCACCACCCAGTGCACGGGAAGCCCGTCC # Right flank : CACCCTGCCGACCACCAGCCCGCGAATCCCCTCCCCCACCTCTTCGGGGTACCGCACGACCTTCCCGAACCCCAGCCGCACCTCCTGGTGGCTGCGCCCGGCGTGCTCGAACCGCAGGGTGATCCCGTACTGGTCGAGCCGGGCGGGACGCACCCGCACGGCAGCCGCCCGTACGTCGGCGGGGGCGAGCCGCGCCAGCGCCCGCACCATGTCCTCGTGGGCCGAGTCGAGGTGGGAGAGGAGTTCGGCCTCGGCGCGGGCCAGCGGGTCGGGCTGGGCCACGACCAGTTCGTCGACGCCGATGCGGCGGCTGCGGCCGTGCTCGGCGAGGACGGCGTACTCGGTGTGCAGGTGCAGGCCGCGGTCGGCGGCGGTCCCGAGCCAGCCGTGCAGGCTGAGCCGGGCGCGGACGCGGTCGCGCAGGTGGACGGGGGCCACGTCGGTGAACTCCACGACGGCGGGGAGGGTTCCGCCGAGGGAGGCGTCGAGTTCGGCCCCGA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1648-4851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYB010000250.1 Streptomyces sp. McG2 NODE_270_length_8307_cov_34.2859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1648 29 96.6 32 ............................C TGCGGAGGTGCCTTTCCGCAGGTCAGAGCCGG 1709 29 100.0 32 ............................. GAGTGGCTGTCGGCGACCTGGACGGACGTGGT 1770 29 96.6 32 ............................C TCGCTGCGCTGATCTGCTGCGGGACGGCGGGC 1831 29 96.6 32 ............................C TGCTGATGCTGCGGGCCGGTCTCCAGGGCCGC 1892 29 100.0 32 ............................. GGAGCAGGGGCAACGCTGGCCGCGATCTGTGC 1953 29 96.6 32 ............................C CCATACACGCGCGGCCCCTGCCCGAGCTGCAA 2014 29 100.0 32 ............................. CCACTGCTCGTGCTCGACTTGCGCCTGGTCCT 2075 29 100.0 32 ............................. GGCATGGCGCTGGAAGGCGTGCGGCTCGCAGA 2136 29 96.6 32 ............................C GCCGGCATCCACACTTCGCCGCCTCCGCGCTC 2197 29 96.6 33 ............................T CGAGACTCGCTCGCACGTCAGATCGCACGTCAG 2259 29 96.6 32 ............................C TCCAGCTTGACCAGCACGCTCGCCCCGCTGGT 2320 29 100.0 32 ............................. GAGGTACAGCAGTCCGTCCAGGAGGCGTTCTT 2381 29 96.6 32 ............................T CGCTGAGGTCGCGGCCGAGCTGGCGGCGGCCC 2442 29 96.6 32 ............................C TTGCTCGGCCTCGGCCGTCCCGATCCATATAC 2503 29 100.0 33 ............................. CGGCGCCGGATCTCGGTGTGGGACGGGCGGCAG 2565 29 96.6 32 ............................C TGCGGCACCTGGTTCAGCTCCCCCACCGGGTC 2626 29 96.6 32 ............................C TGCCTCGCCAACAGGACATCGGCGCCGAGTAC 2687 29 96.6 34 ............................C CCCCCCAGGTCAGGGGGTTGCCGATGGCGGTGCG 2750 29 100.0 32 ............................. TCCGGGACCCCTTTGCGTAGTCGCCACCCGAC 2811 29 100.0 32 ............................. TGCTTTTGGGTCGCCCGGGGCGGTGCTCAAGA 2872 29 96.6 32 ............................C AGGCTCACCCAGTCGGTCCTCGGCGCCATACC 2933 29 100.0 32 ............................. GGGAGGCAACTGGGGAGGTGGGGAGTTCTCCC 2994 29 100.0 32 ............................. TCGGGGCTGGGGCGCAGGTCGGTGGCGATGTA 3055 29 96.6 32 ............................C GCCGTACCCGCACCATCGAGCGGACCCTCCTG 3116 29 100.0 32 ............................. GCGTCCTGGAGCCACGTCGCCGTCCCCGAGCT 3177 29 100.0 32 ............................. GGTGTGTCGGCTGAGGGTTGGGCGGCCGGTTG 3238 29 100.0 32 ............................. TGGGCGGCCTTGATGCCGGTGGAGGTGACGCC 3299 29 96.6 32 ............................C TCGACATCCCGCAGATCCAGCCCGGCCACGAC 3360 29 100.0 32 ............................. GGAGGGCAGCGCCAGAAGTCGCCCGGCACCTG 3421 29 100.0 32 ............................. CGCTACACCACCGACCACGGCCGGGTGGACGA 3482 29 100.0 32 ............................. CGGGAGGAGGCCGAGGCCCGCGACCGGGCCCG 3543 29 96.6 32 ............................C GACGGCCGCGTGGACGGCAACGCCCGCTTCTA 3604 29 100.0 32 ............................. GCGCGGCGGGTGGCGGCCGCGTCGCCCATGTT 3665 29 100.0 32 ............................. CGATGACCCCTGGGGTAGGGCCTCCGGCTTTC 3726 29 100.0 31 ............................. GTGGCCCGGCCGGCGGCCCGCTTCCTGAGAC C [3752] 3787 29 100.0 32 ............................. GCGGCCCGGCGGGCGGGGTCCTGCATGGTGCC 3848 29 96.6 32 .................C........... TGCACTCACCCTGACCTCGACCTGCCCGGAGG 3909 29 96.6 32 ............................C CTGATCCCGCTGCCGATCGACAGCTGGATGCC 3970 29 100.0 32 ............................. GCTTCCTGGAACCCGGCGTGGGTGGTGCGGGC 4031 29 96.6 32 ............................T CTGCGCGACGGGTTCTCCTCCCGCCGCGTCGC 4092 29 100.0 32 ............................. GTCTTGGCCAGCCCTGGATTCTGGGACACCGC 4153 29 96.6 32 ............................C GTCATCGGCGGGTCCAGCCGGCCACCGGGCGA 4214 29 100.0 32 ............................. GTCATCCAGGACACGCTCGCGGCCGTCACCGC 4275 29 100.0 32 ............................. GCGTCGCGGCCCTCGGCGGCCCGGCGTTCCAT 4336 29 96.6 32 ............................C TGTCCGCGAGCTGCCGGTGGTCCGGCTGGTCC 4397 29 100.0 32 ............................. ATCGAGTCCTCGGCCATCCCGTCCTCATGTCG 4458 29 96.6 32 .........C................... GCGTCGGCTGCCCTGGAGCGCGCGGCCGAGGA 4519 29 93.1 33 ........G...................C TCGTCCCAGGTGATCGCCATGGGCACTCTCGAA 4581 29 100.0 32 ............................. CGGTGCCCGGCGACGTCGCGGGCCAAGTCCTC 4642 29 100.0 32 ............................. GCCCGCCAGCTCCGCTACGACCTGGACGAGCT 4703 29 96.6 32 ......................C...... AGGTCATCCGCGACGGCGGCCGGACGTTCGCC 4764 28 89.7 31 .....T.T........-............ CGCGCCACGCAGGACCACTGGCGCACCTGTT 4823 29 93.1 0 ..............C.............C | ========== ====== ====== ====== ============================= ================================== ================== 53 29 98.1 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : CCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCGGCAGCTGCGCTCGGGGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACTGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGGCGAATCCGCGACCGTCTGTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCTGGCGGCCCGTCGACTACGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT # Right flank : CTTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCGGGCCTGGGGCTCAGTCGTCGGGGGTGGTGTTGGACGCGTCGCAGGACCAGCAGGTCCACTCTCCGGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCATCAACAACTCGGGGTGATCGGGCGGCCGACTGCCCGAAAGTCGATCAAATGCGGCTGAATCGTCAGGCTTGCCGAGCAGTCAGAGATCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACGA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1312-1161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYB010000819.1 Streptomyces sp. McG2 NODE_1156_length_2302_cov_13.594, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 1311 24 100.0 39 ........................ TCTTTGACCGGCAGGTCACATCGGACCGGCGCACAACCC 1248 24 100.0 40 ........................ TCCGTGACCGCGAGGTCGGCACCGACCAGCACCCCTCGAT 1184 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CCTTCTTCCTCGGGCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTGCTGCGGGCCGTCATCGGGGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCCTCTGGGTGATCGCCTCCCTGGCCCTCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGAACCTGGCCATCGACCGGGTGGCCTCAAACGCCGGCCAGGCTTGAGTGGCCTCAATCGCCGGCCAGGCTCAGTGGCCTCAATCGCCGGCCGGGCTACCAA # Right flank : ACCCCCCAGCCCACCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTTTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGAAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //