Array 1 63478-62848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCYH010000001.1 Campylobacter lari strain TTU_575 NODE_1_length_133505_cov_43.320009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 63477 36 100.0 30 .................................... GGAAGTTGCAAACGAGCGTCACTAGAACGA 63411 36 100.0 30 .................................... ACATCGCGATGAAGGACACATCAACGAGCA 63345 36 100.0 30 .................................... TATACTTTTCCTACTCCTGATAATTTTACT 63279 36 100.0 30 .................................... TCTAGTGATAAAGACTTTAAGCATTATAAA 63213 36 100.0 30 .................................... CAAATCGGACTTACTAACGAAGCTATTAAA 63147 36 100.0 30 .................................... TTTAACCGTGCTTTCATCACCTGGCAAAAG 63081 36 100.0 30 .................................... TCATCTGCATAAATGTTTGTTGTGCCTATA 63015 36 100.0 30 .................................... GGAAGTTGCAAACGAGCGTCACTCGAACGA 62949 36 100.0 30 .................................... TTAAAAGAAACACTTAATACTTATGAAGAA 62883 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : ATAGCAGCGCTAATCCCTGCTTTTTTTATTTTAAGGTATTTAGGCATAGGAACTTTGATCTTACTTGCAATTTTACTTTTTTTAATCTCTATTAAAATCATCGACCAATACGAAAAACAAACAGGCATACACGATGATAAACATATTGTAATAGATGAAGTTGTTGGGGTATTTTTAGCCTTGGCAATTTGCGGACAAAGTGTTTTTACTTTTTTACTTTCTTTTGTTTTGTTTAGATTTTTTGATATTACAAAACCTTCTATCATAGGTAAAATTGACAAAAAAACCAAAGGTGGTTTAGGTGTAATGCTAGATGATGTTTTAGCGGGGATTTTCGCAGGATTATTTAGTGCTGTGATTTATGGAATTTTGCTTAAATTTGATCTTTTGTGGTTTGATATAAGCATTATGGAAATATTTTAGCTTCATAAATTTGTGAAGCTATTTTCTAATTTTCTTTAGAGCAAAATAACAATAATTCTAATTGTATTTGCTATACG # Right flank : AGATCTTTATCAAATAAAGAAAACTAGGTGTTTTTCTATGGAAAAAGATCTAAAATATGCTATAATTCTTGCTAAAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTTGGTCATCCACGCAGGGTTACAATCCCTTTAAAACCATTAAAATTCAAATAAACTAGGTTGTATAAACTTGGTTTTTTTCCTTTCTTTGTTTATTTTTTCATTGCCATATTTAAAATCTTTACTTTTTTCATCATATTCAAATAAAACTAGATTTTTATCATCATTCATTTTTTCATTAAAAGAAACCCCACCTAATAAAATTTGCATATTATCAAATTGTTTTTCTGTTATGGTTAAAACTCTTATATTTCCATAAGGTGGTAAAATTTTCTCTATCGATTTTATCGTTGTTTTTGCCGAAACCGATCCTTTACAAATTTTCACATACACACTAAATTGCATCATGAAAAATCCAAGCTTTATCAATGAGTTTCTAAATTTATTTGCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 484-1488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCYH010000006.1 Campylobacter lari strain TTU_575 NODE_6_length_80227_cov_22.000836, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 484 37 100.0 38 ..................................... AATGTAGTGTTCGTAACGCCAGGTACTCCTATAATACT 559 37 100.0 41 ..................................... ATACTCTCATAAACTTTCATTTTTTATCCTTATATATTTTT 637 37 100.0 41 ..................................... TGCAAAGTATTTTTGGCATTGTGTTCCTTTCTGAATAAAAA 715 37 100.0 37 ..................................... CTCTATAGCCTGAACCATCATTTCATATCTTCTTTCG 789 37 100.0 38 ..................................... AATCAGATCATCTTCAAGTACAACGATATCTTTATCAG 864 37 100.0 34 ..................................... TTGAATCAAATTCTTTTTCAATTGATTTTGTAAA 935 37 100.0 40 ..................................... ACTGGTCTGAGAGGATGATCAGTCACACTGGAACTGAGAC 1012 37 100.0 34 ..................................... AACATTTAGAACTTGTTTAATTAACCCAGAGATT 1083 37 100.0 39 ..................................... TACTCTAGTGCGACAGGTGGCTAGACTACTATTAAACAT 1159 37 100.0 39 ..................................... TATATGTCTAGGGATGCCGACTAAATCTAGCTCATTCGA 1235 37 100.0 34 ..................................... AACTTTATTAAATTCGGTGATAAGCTTTTCTATA 1306 37 100.0 36 ..................................... AATAGCATTATATAATGCATCTACAATTATGTCATA 1379 37 97.3 35 G.................................... ATGATTTGAAGCAATTGATGATTTTGCAACAGCAG 1451 37 94.6 0 .................................TG.. | T [1481] ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 99.4 37 ATAAATACAATATGACCTGATTAAAAGGGATTGAAAC # Left flank : GCATAGAAAAATCCTTTATACTACACCCTAGTAAAGACAAAAATGTTTTTACTCCAGATAATGATTTGTTTTTTTAATTTGCGAACTTTTTAAGTATTAAAAGCTTGAATTTAAAAACTATATTTTTAAAATGACTTCGCAATTTTGTGTTTTTATGTATTTTAAAAATACTTTTGCTAACTTTTATAATTTTTTAAGTTTTTACTGCTGAAAATTTAGGCATTTGCAAACTTAAAATTTCCAAAAAATTCACAAAATATGGTTTTGTAAAATTTCCTAAAAACATTTGCGAACTTTTTTACATTTAGAAGTATTGAAATATAGTCATTTTAAGCAAAAATTAATCAAAAACACCCTTTTTAAAAATCGTAATTAACCTACATTTGCCAACTTTTTATTTACATAACTCAAATGACTATCACATCGGTATTTATAAAAAGATGTTATAATCTCATATCTTTTTAAACATGCAAAATTAAGCTAA # Right flank : CACAAGCTGTCATTTATTTGTGGTAAATTTTTGTAAAAAAACAAGGAGGTTGCATAAAAGTTAATGTAAATTAAAATAAAATATATAAAATTTAAAAATTTATAACAAAAGGAAAATACATGTTTTTAAATTTACTAACACCAGAAGAAAAAATTTCATTTTTAGAGATAGCACATCATTTAGCTCATAGCGATGGTAGTGTTTCAAATGCTGAGTCTGTAGTTATTAGCGGGTATTGTGCTGAAATGCAAATAGCAAATATAAGCTATGATGATTCTAAATTTGATTTAAGATCGACTTTAAAAAACATCAAATCCCCTCAAAGTCAAAAAATCATTTTGCTAGAAACTATGGCGCTTGCTATGGCTGATGAACTTACGCATTTTGAAGAGCTAGATAAAGAGGAAAAAAGTGTTATCGAAGCTATGCTAGAAGAGTTTGGTTTGTCTAAAAACTTAGCTATTGTGTATGCAGAATGGACTAAGGCTGTATTGTCTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAATACAATATGACCTGATTAAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //