Array 1 911346-913631 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066069.1 Streptococcus dysgalactiae strain FDAARGOS_1017 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 911346 32 100.0 34 ................................ AGACTATAAAGTTATTGGTGGTAAAGGAAAACTT 911412 32 100.0 34 ................................ AAAAACACGGCAAGAACGCACTTCTGGGAATATG 911478 32 100.0 34 ................................ GTTGGCGAGAATGTGCCATAAAGATTAGCGGCAG 911544 32 100.0 33 ................................ AGATGGTAAGCAAGGAGAAAAAGGGGACGATGG 911609 32 100.0 35 ................................ AACGAGATAGGTCCTATCTGGCTTATAAAAATCAC 911676 32 100.0 35 ................................ ATACAACGAAACGTTGTCAACGACATTCTCAAAAG 911743 32 100.0 33 ................................ TTTTGAAGCAGTCAACGTCAGTCGAGGATTTTA 911808 32 100.0 35 ................................ GCCATCTCCGGATGGTGATTACAATTTTGTAGTTT 911875 32 100.0 33 ................................ CAGTTGATTCTGGAGCGTTAAAGGAAAGTATCG 911940 32 100.0 33 ................................ GAACAACAGACGAGAAAAGACAGACCTAGAACC 912005 32 100.0 35 ................................ TCAAGAACTTGGAACTGGTAAAATTACAGCAGGTC 912072 32 100.0 34 ................................ ATCAACACCAGCTGCAGCTTTACGAGATGTTTCA 912138 32 100.0 35 ................................ AACCATGCGTGATGTTTATCAGAAATTCAATACCT 912205 32 100.0 33 ................................ CCTATAAGACATCTTAGAAGCTAGCTTAGCCAA 912270 32 100.0 35 ................................ AGAAATCGTAGAAATTGCCAAACGTTTTATTGACG 912337 32 100.0 33 ................................ CTTTTTATTTTGACACAGGCGCAGTATGTCAGT 912402 32 100.0 37 ................................ TATTTGATTTTGGTAAGTCTGTCGTTGAAGCTGCTGC 912471 32 100.0 36 ................................ AATTGTTCCGCCGAGAGATTGAAAAAGTGATGCAAT 912539 32 100.0 35 ................................ TTGCTCTGAAAAAATACTATTTAATTTGTCTATTG 912606 32 100.0 33 ................................ CATTTGTTTGTCTGACAAATAGACATTGTGTTT 912671 32 100.0 35 ................................ TAGAGATTTATCATAAAATGCTGCGCTATCTGCCG 912738 32 100.0 34 ................................ TACTCTAACAGGTACACAACCAGTTACATTTACT 912804 32 100.0 34 ................................ CAACAGGAAATAGAAAACCTGCTGAAAAACTCTG 912870 32 100.0 35 ................................ AAAAAGATAATCTTATCGCTTATATCCAACCAACT 912937 32 100.0 34 ................................ TTTTTCCATCACTCCACCTCTTTCAAAAAATCTA 913003 32 100.0 33 ................................ ATCGCAATTGCATCAACTTGAATATCACTGTCA 913068 32 100.0 34 ................................ TTTTTTGGACTTATTTAAATCTCCAAAAAAAGAG 913134 32 96.9 34 .............A.................. ATTTTGTGTTATTAAATAAAACTAAAAAAATATT 913200 32 100.0 36 ................................ AATTTCTAAACCTAAATTATGAATATATTTATCACC 913268 32 100.0 34 ................................ TCTTTAGTACTGTCGACCACCGTAAAGACATCAT 913334 32 100.0 34 ................................ GTCGTATGTTAGCATAAGTACCTCCTTATCTTAT 913400 32 100.0 35 ................................ TAGCTATTATAACTCCTTCAGAACAGTCAGGACAC 913467 32 100.0 35 ................................ TTTTCTAACGGAATTAGTACTTTATCTCTTAATGC 913534 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 913600 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ===================================== ================== 35 32 99.6 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CCTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCAGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1564698-1563870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066069.1 Streptococcus dysgalactiae strain FDAARGOS_1017 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1564697 36 100.0 30 .................................... ACTACCTGTTGCGATATGAAGCTCTTGCAG 1564631 36 100.0 30 .................................... TATAAATATCCTGATGTACCAAAGGATATT 1564565 36 100.0 30 .................................... CAAACAAACTGGAGCAATTAGTGCTTTTTC 1564499 36 100.0 30 .................................... CAAGAGATACAAAGCGCAGGCAAACAAGCT 1564433 36 100.0 30 .................................... AAATATACCTAATAGAGACTAGAAGACATG 1564367 36 100.0 30 .................................... TAGTCGAGATATGACATTAAAACGATTGAG 1564301 36 100.0 30 .................................... GTTTAAATTAACCAATTTATCTCGTTCTAG 1564235 36 100.0 30 .................................... TTTGGTCAGAGGTAAGGTCTTCAAATTTTA 1564169 36 100.0 30 .................................... TCAATTTATTGATGCTGATGAAGACACAAA 1564103 36 100.0 30 .................................... ACTACTCGTCATTAAAGGGTATCGCTTATG 1564037 36 100.0 30 .................................... CAGACCTAAAACCATCGTCAAAACATTTAA 1563971 36 100.0 30 .................................... TTGCTCTTATCTTTTATCCGTTTTTAGATA 1563905 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //