Array 1 8018-6852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSVY01000003.1 Actinobacillus pleuropneumoniae strain 5651 contig_chr00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8017 28 100.0 32 ............................ AGCATAAAAGCGGTAAAGCTCGCCTTTTGCAC 7957 28 100.0 32 ............................ AGCTAACCCGTGATATTGCAACGTTTACGTTG 7897 28 100.0 32 ............................ GAATTAAGCACAGAAGCACCTACGAACGACTT 7837 28 100.0 32 ............................ GATTGACAGCGACTGGAAACCAGCAGGCGCAA 7777 28 100.0 32 ............................ TGTTTTAGCTGCTCAGCAATCGTCTTTTTCAT 7717 28 100.0 32 ............................ AGACTTCTCAAGTAAAATGACTTTTTCAGCAA 7657 28 100.0 32 ............................ TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC 7597 27 96.4 32 .................-.......... TACAATTTTACGCACACGCTTAACAATACTTT 7538 28 100.0 32 ............................ TGCCACATTTAACCGCTCTTGCGTGTAGATTT 7478 28 100.0 32 ............................ AAATTGTGCTTATCTTTAACTTCACCGGTTTC 7418 28 100.0 32 ............................ TACGCCTGAACCCTGTCCTTTCCCATTACCGT 7358 28 96.4 32 ...................A........ TTATGCTGATAAAATGATTCTTAAAGAAATAA 7298 28 100.0 32 ............................ CTACGGGTTGGCTACGCCAAACCTTGACAATC 7238 28 100.0 32 ............................ ATATCCACTAATAAAAGTATGGCTTCGCTTTC 7178 28 100.0 32 ............................ TTTTTAAAGGCTTCTAAAATCACTGAAGAAAC 7118 28 100.0 32 ............................ ACACCAAAACTATGCCGGTAATCTTTATTTAA 7058 28 96.4 32 ........................T... ATTCGCCCCGACGATAAATTTCTAACTGCTCC 6998 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 6938 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 6878 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.9 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //