Array 1 3884-3527 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUUG01000072.1 Bacillus toyonensis strain AFS032918 AFS032918_95_G1_Contig72_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3883 30 100.0 35 .............................. GGGACACTTTTCCATAATTCCAATATTCCATGAAA 3818 30 100.0 35 .............................. AATGAGGTCAAACGGTGTCATTCACGGACATTTTC 3753 30 100.0 36 .............................. TCATGAGTTCGATAAACTTTTTAGCTCCGTCTCGGA 3687 30 90.0 36 .G....T.....................G. ATGTATAAAATCTTTGCTCCAAAGAATGTTGACCAT 3621 30 93.3 35 ..........G..........C........ TTTAGCATGGACGGACTATATTTGTTTTTTAATGT 3556 29 83.3 0 .....-...C.TT...T............. | A [3543] ========== ====== ====== ====== ============================== ==================================== ================== 6 30 94.4 36 GTTTAACACTAACATAAGATGTATTTAAAT # Left flank : AGTCAACGATGTAGTCAATGCGGATATATTTGTAAAGAAAATCGTTGTACACAAGCTATGTTTGAATGTAAGCAGTGTGGATATAAAACACATGCTGATTATAATGCGGCGAAAAACATTTCCACTTATGACATCGAAAATATTATAAATAAACAATTAGCGGTACAAAGCAAATTGCATTCAAAAAAATGTATGGAAGAGTATATAGAAGAGTTAGGATACCTGGATTAATGTAGATAATTGAGTCCATATTAAATAATTTGGTGGATTTACACGCCATAAATGGAGAAGTAGCACATAAGAAATTTACCAAGTGCCAACACTCCGTAAGGTAGTATCAAATGTAAATAAACATTGATGCGTGGGCATTTTCATGCTCTGAAGGGTGTAACACAAAAACCGTTACATAATACATCTATTTGCTGGTAAAATAATGTTTAATATTCATCTTATCAGGTTTTTTCCATATTTGTTAAAGTATCTATCTGTATTTCATCGGG # Right flank : GTTACGGTTACTAATTGTTCAGCACTCAAACGATAAGAAAGTGAATTTTATCAATACGAATTTTTTCTTTTACATATTAAAATGGAAGGCCCATTTCAATGTATACTGAACCCTTCACAAATCGTGAAGGGATTTTTTTATTCAATAAACGAGTTTTACAAAAGATACAAAATGTTAAACTTATAAAACCCAGTGATATCAGTAAGTGTGCATGAAATCACTGGGTTTTTATTTGGATATTTAATGGTGTGTTTTACAAATTATAAAAAGATATAAACTTAGTTTTACTTTTTAAATATTATCCGTCCTAAAAAATGGCCAATGTTCATAAAGGTACAATTTTCTGGACACATACAATGGAGGGTTGTATCAAAATTCTGATTATTCAACTATAGAATCGCATAGGATATATATATTATTCTTTACATTCATTATTTTCAGAAACATTACAAGGCTGTCAGATAAATGAAAGGTTATTCAATATGAAAAAGAAAGTATGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACACTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 470464-470240 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUUG01000009.1 Bacillus toyonensis strain AFS032918 AFS032918_95_G1_Contig9_140514, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 470463 29 96.6 37 ..................A.......... TTTCTACAAAATGAAATTTTTATAATCAATCTTCATC 470397 29 100.0 36 ............................. TGAAACGAGGATTAAGCGTATTACAGAAAAAAGTTT 470332 29 89.7 35 G...A...........A............ CCTAAGGGTTTGTGTTTTCTCTTCTCAGATTCTAT 470268 29 93.1 0 G...........T................ | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 94.8 36 ATTTGATATCAACTATGTGGAATGTAAAT # Left flank : TTGTAAAAGTTGTGCTTTTGAAGTAAACGCTGACTATAACGCTTCGCAGAACATCGCAAAGAGTGCAAGGTATATATCAGATAGTACAGAGAGGGAGTATCATAAGAAAAAGCAAGAAGATTTAAAAGAAATATTAGGGGAGAACGACATAATAAATGAACAGCTATCATTGTTTGATAATCACGATGATATTGCTTAGGCGATTTAGCGTCTAAAGGGTGAGGGTGTTCTATTGTGGGGAACAAAAATCCACTCACTAAGGGTTAACTCTAGTCTTGTTGTGTTACCGACTAGACATTCTATATTGATATCGAATGAACATTCCGTAGAGTTGCTGTAAAGCTGATTTATGAATAAATTGCTGAAAGTATTGATACATAAGGACTTATAAGTATTTTTAAGAAGTAGCTGAAAAACGTATTGTAGGTTTATTGCAAAAAGTTAAATTGAGGTGTATCAAAAGGTTGCTATTGCAGCTTTTTGAAACGAATTTACATAGG # Right flank : AAGTTTGTATTTTCGTTGAATTTAATTTGTTGGTAAGTTTAATATCAACTATATGAGAGTAGCTTTCTTATCAGAAGGCTTTTTATTTTCATTATTCCAGTGAAGTGGTAAATATATTTTGAAAAACTTATAAATTAATGTGACAAACTAACGAAAAAAATTGTATTTATTAATGTATAAGACGGGAAAGAAGTTAATACTACGCAACAATAACTAACGAAACATTACGTAAAACTAACTATTAGCGTTCAGTATCTTTTCGGATGAATAATCCAGTAATCCCCGTATAGCAGCCGAAGGACGTTAGAATGCGATTTTCGGTAACTTGTTTTGCTGTTTTGATAGGGGAAAATGAGATTGTAATTGTTTGTGATAAAATTGTGTTTGCAGTAAATTAAAAATGGGATTAGTATTCTAGTCTTTTGATAATCACCCTATTCGGAATCCTGTTTAACAGCAGGGTTCTTTCTTGTTATCGACGTTAACATTCGGACGGTTTG # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGATATCAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 87% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //