Array 1 43204-42715 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959836.1 Lachnoanaerobaculum saburreum strain DNF00896 Scaffold473, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================================== ================== 43203 24 100.0 50 ........................ AAGAATTCATAAAGTCCATCCATGTTATCGAACTTAAAGTTTACAAAAGC 43129 24 100.0 48 ........................ ATGTATACAGTTACGCAATCAGATTTCATAATCCAGGTTTACAAAAGC 43057 24 87.5 51 .......AT.T............. TGTGTCTTAGTATTGTCGGGGCTTGTTTCGACTTTGCAAGTTTACAAAAGC 42982 24 87.5 50 ..A.......T..A.......... CAGCACCTTAAAACTTTGGGCTCATAGAAGCTTAAAATGTTTACAAAAGC 42908 24 83.3 59 .TA.....T.T............. CTTTGCTCTATACTTCATACTATCCCAGCCTTACTCTTACAGTACTGGTTTACAAAAGC 42825 24 79.2 63 .TA....AT.T............. TTTGTCCTCAAAGCTTTTAATATTTCAGCATCTTTAGTTTCATCAAACACAGTTTACAAAAGC 42738 24 87.5 0 .TA.......T............. | ========== ====== ====== ====== ======================== =============================================================== ================== 7 24 89.3 54 TATCCCCGATAAGGGGACGGAAAC # Left flank : TCCATCTGCACTTATTCCCATCAGTCCTACATGGTAGCTTATATCGGCAATCAGTTTATTCCTTGCCTGTATTGCAAAGTTTTTGATGGCTGTCTTATTCATACAACCCTCCTGTTATTATGTATTTTATATAGAAATATACTCTGTATAATAACATAATAAAGACGCTTTTAGCTACACTAAAAGACTTTCACACTAATGCATTGATTATAAAATTTTTGCTTGGACAAAGTATAAGTATGTGATAGAATAAAAGGGCTTAAGTAAATGAATATAGAGGAATGAGATTAGCCTTAGCTGTTTAATTATACCTTTAGGTGGATTTATATTCTAAATTTTGTGATTTTGAGACGGCCCGCATAAAATAAGGGTTTATAGCACTTCGAGTAACAAATATCACGAAATTTTTAGCAAAATTCGCTTGTTAAATTTTAGGCACGCTAAAGCCTCTTTCAGGCCTTGTAATATAAGGGTTTGAAGGGGGTAGGGTTTACAAAAGC # Right flank : AATACAACATCAAGTGGTGATATCATATCTATCATTTCTTGATTATTTACAAAACCTTACCCCAATTAGGAAACACCCCCCTTTCCTACCTTAAAAATTAGATATTAAAAAAGGATGTCACACTATATTCAGTGCGACATCCTTTTTTGCACAAAAATAAGCCGAACCTCGAAAAGTTCGGCTTATTTTGTAATATGGGTATGCAAACCCATATATTATTACACAAAAAGGTTGTCGCAATCTTTGCAACAACCTTTTAATATTAGAATATTCTCCAAGCTACTATGAAGTTGTTTCTCCACCAGCTTGACATACCGCTTCTCTTTACTCTACCTCTTGAAGATGAAGCATCTATGATCTCACCGCCGCCTGCGGCTATTCCTACGTGGCCTGAAACCACCACGATATCTCCTGCCTGTATATCTGAGAAGGAACTTATTCTTGTATATCTTCCCGGATTTCTCCAGCCTGAAGATGTGATATAGGACTGTCCTACACCC # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.66, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGATAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37197-37562 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959838.1 Lachnoanaerobaculum saburreum strain DNF00896 Scaffold484, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37197 36 94.4 30 .............C.A.................... GAGAATTTATGGGAGTCTTACATGGTCTCT 37263 36 94.4 30 .............C.A.................... TTGAATGCATTCGAACCGGCAATTCAAGTG 37329 36 100.0 30 .................................... AATATATCGGCTACATGGGATAATATCGCA 37395 36 100.0 30 .................................... AAAAATTGTCACTCAAACCTTGAAAACTTG 37461 36 100.0 30 .................................... GAAGTGTGGCAAATATTCAAGGCAATCCTT 37527 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTTTACATCCTTTTGAATTAACAAAGCTCTCAAAC # Left flank : TTCACATTGCCTCCATATAATTCAAATATAAATAGTGTTCATAACCAGTATACAATATAAATATGTATAAATGTTTAAGATAGTATTCTTATACTTAAAATATTATATTGACTTTTTTATTTGATATGATATTCTTTAATTGAATTAACAAAGCGAGTGCAAATAAGGATTTATCCGATATCGCCTATGGTCCGCATTGTGCGGTTAAAAAAGACCTCTTAGGGTCTTTTTTATTTTGCACATACCCTTTTGAATTAACAAAGCTCTCAAACTTCAATCAGGAAACTACACTAAGCGGAAGAGTTTTACATCCTTCTAAATTAACAAAGCTCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACATCCTTCTAAATTAACAAAGCTCTCAAACCATGGTTGTGAATACCCTCCGCCATTGTTT # Right flank : CAGAACTTGCAAATGTAGAACAACTACCGAAGTTTTACATCCTTTTGAATTAACAAAGCTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACATCCTTTTGAATTAACAAAGCTCTCAAACTGCAGTTATACCTTGCTCCTTCAGCCTTGCGTTTTACATCCTTTTGAATTAACAAAGCTCTCAAACTGAGTTTTGCAAGCTTAACGGCGGTTTTTAGTTTTACATCCTTTTGAATTAACAAAGCTCTCAAACACATTTGTGTTACGATGTTGAGGCAATCGATTTTTACATCCTTTTGAATTAACAAAGCTCTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACATC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACATCCTTTTGAATTAACAAAGCTCTCAAAC # Alternate repeat : GTTTTACATCCTTCTAAATTAACAAAGCTCTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 220702-220317 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959848.1 Lachnoanaerobaculum saburreum strain DNF00896 Scaffold565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 220701 31 100.0 39 ............................... TATAATATCCATGGGCGGAATCAACCCTTCAAAATCAAA 220631 31 96.8 40 A.............................. GAGTCGGTCTTGTAATAGTCAGAACATTCTTTGATTGATG 220560 31 100.0 44 ............................... CTTCTCGCTTCCATAATAAAATTTCAACATAAATTCTCCTCTCG 220485 31 100.0 39 ............................... TTTTTCTACCTTCTGAGTTTTCGGATCCCAAAGGAAAGT 220415 31 100.0 37 ............................... GCAACGGCCCTGCAGCCGCGGCAATATTTCAGGAGTT 220347 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================ ================== 6 31 99.5 40 TGTAAGTACCTTACCTATAAGGAATGGAAAC # Left flank : ATATTATTTATTTTGTTGTGTAACCTTTAGAATAAATTTAAAGGAGAATCAAATTGAAATCATTTAGAAATCTTTTTTATATGTAAATAAAAAGTCTGTCGACCTCTATTTTTATTTTCAAATATGTAATTACAAGTACATACCATAGTATGTGTTTATAATTACATTATCTGTTCTTATTTGCTTAATTTTTTATAATGTCCTGATATCTGAATTTTTGAGAGTACTCCTTGATTTAAAATTGCTGTTTTAAACGGATTTTATTCAAAATAGTGCTATATTTTTACTTTAATATCCTTGTTTTTATAGCAATACTTATAATTACTCGTTTTATATACTAAATCAAAAAAGTCTGTCACTGATTGTATACAATCACGACACCCTGAAAAGCCCCATTTTAAGCCATTCTTAAAAATAGATTGACAGACTTTTTAGACTGTAATACAATGGTTTTAGGTCGAAACAAGAGTTTTCACCTATCACAACGGCTTAAACGCAGT # Right flank : TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGTAAGTACCTTACCTATAAGGAATGGAAACAAAATGCATATGGCCCTCTGAATTGCATGATTAAGTAAGTACCTTACCTATAAGGAATGGAAACGGATCTCCATGACCTTTACCAGTCTCGCCTACGTGGTCGTTTGGCTCGTAAGTACCTTACCTATAAGGAATGGAAACTGAAATTAATTAACTCTTAGCCAGTAACGGTTATTGTAAGTACATTACCTATAAGGAATAGAAACAAGCTTTTTTGAACTGTTCTTCAACTGTTGTTGTGTCCTCCCAAAAGTAATTACCTTACCTATAAGGAATGTACATCTAGTTTGATGATAAACAGTAACTAAATTCCATATTCAACATAAAAAAGGCAGCAGCATCATTTCAATGCTACTACCTTTTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAAGTACCTTACCTATAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 234999-234502 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959848.1 Lachnoanaerobaculum saburreum strain DNF00896 Scaffold565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 234998 30 100.0 36 .............................. CAATCCTGTCATAGAATAGACAACAATAACTCTTCT 234932 30 100.0 39 .............................. GGGTTTTCATCACACATGATGATGTTTTTGTTTTTTATC 234863 30 100.0 37 .............................. TTCGTGGCTCTTCTCTTTTTCCATCTTGGCCGCTTAC 234796 30 100.0 34 .............................. AGATATAACTCATCCCTGAAATACAATTCAGAAA 234732 30 93.3 36 ....T.....C................... CGAATAGTCGAAATCGCCACTTTAATTTCGCGCACA 234666 30 96.7 40 ....T......................... ATACTTCTTACATGATTGCCGGTAAAAGCCCTATATAACT 234596 30 96.7 35 .......T...................... ATATTCCCTGCCGGTATAAAGACTATTCGTCATTT 234531 30 90.0 0 ........................AC..C. | ========== ====== ====== ====== ============================== ======================================== ================== 8 30 97.1 37 GTAAGTACCTTACCTATAAGGAATGGAAAC # Left flank : GCTATGATGAGAAATACAAACCATTTAAATACAACTAGCAGGAGCATTGATTTGCTCCTGTTTTTTATATACGAATCATATAGGATAAAAAAGTCTGTCGACCTCTATTTTTGCTTTTAAATATGTAATTACAAGTACATACTATAGTATATGTTTGTAATTACATTATTTGTTCTTATTTACTTGATTTTTTATAATATTCTAATATATAAGTCTTTGTGAGTTCTCATTAATATAAATTTGCTGTTTTTAATACACTTTATTTAAAATAGTACTATGTTTTTCACTTTAATATACTATTTTTATAGCAATGCTTACAACCTCACTTTTTATACAGCAAAACAAAAAAGTCTGTCACTGATTGTATACAATACCAATACCACGGGAAGCCCCATTTTAAGCCATTCTTAAAAATAGATTGACAGACTTTTTCACCTGTAATACAATGATTTTAGGTCAAAACAAGGGTTTTCACCTATTACTATGGCTTAAATGCTGTT # Right flank : CAACCGGTATCTTGATATATCTGTTGGTTTTACCTTACCTTTAAACAGCAAAAAGACAGTAGTACCATTTCGATACTACTGCCTTTTTGTATTGTCTATATTTTATTTTCTTTTCTGATACTTTCTACCTCTTCATTTATTCCTCTAATGTCTATTCCAAATCCTTTCTCACATTTATTTTCTATATCCTTACTTTTCAATTCATTTATGTCATTTTCAGAAACGGAGTATCTCTCATTTGATAAATGTACTGAAAAAGGTATGCCTTTTTGTACGACCATTTGTTTTAGACACATTCTGAGAACTGTTGATAAATCAATTCCCAGCTGATTACAAATATCTTCAGCATCAATTTTTAAATCCCTGTCAATTCTAAACTGTATTAAATTCTGCTTATTCAAAATACCTCTCTTTCTATTTTTTTAACTTCTTCAAATCTGAAATATAGTCTATTATAAGTTTTTTTAGATTTGCTAGACTAACTCTATAATCCGGGTTTC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGTACCTTACCTATAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 238030-237696 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ959848.1 Lachnoanaerobaculum saburreum strain DNF00896 Scaffold565, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================== ================== 238029 30 100.0 49 .............................. ATTCTTATCAATCTCAATGTAAATGTATTTAACATAAGTTTCACCATAA 237950 30 100.0 38 .............................. CCGTACCATTTTGAGATGACCTGGAACTCTTTCTCGGT 237882 30 100.0 39 .............................. TCTTCCGGATTTGTAGTAAACTCGCAGTTCACTGCAATC 237813 30 96.7 56 ......................G....... GGAAGCGGAATAAACCACGTAGTAACAAACTTTGAAAAAACTTAAGCAAACATAAT 237727 30 93.3 0 ........................AC.... | CC [237700] ========== ====== ====== ====== ============================== ======================================================== ================== 5 30 98.0 46 GTAAGTACCTTACCTATAAGGAATGGAAAC # Left flank : GAGCTTGCAGTCGGTATATTTTCATTTATGTCGCTTGGGAAGGCGATAGAGATATAAAATGCGTAAACTCCATATGCTCATGTTTTTATATGTAAGGAAAAAGTCTGTCAACCTCTATTTTTGCTTTTAAATGTGTAATTACAAGTACATACTATAGTATGTGTTTGTAATTACATTATCTGTTCTTATTCGCTTAATTTTTTATCATATAAGTTCTTGTTAAGTGTTTTTAATATAAGTTTGCTGTTTTAAACTGATTTTATTTAAAATAGTGCTATATTTTTGCTTTAATATGCCTATTTTTAAAAATAATACTTACAATTACACCTTTTATACAATAAATAAAAAAGTCTGTCACTGATTGTATACAATCACGACACCCTGAAAAGCCCCATTTTAAGCCATTCTTAAAAATAGATTGACAGACTTTTTAGACTGTAATACAATGGTTTTAGGTCGAAACAAGAGTTTTCACCTATCACAACGGCTTAAACGCAGTT # Right flank : CTATATTCACAAGGTTGGAATGCAAAAACTAAAAGGAGAACAATAGATGTTCGTCATTGTCACCTATGATGTGAATGCTAAACGAGATCCTAAGGTGATGAAAACTCTAAGAAAATACCTTACACATGAGCAGCGTTCAGTATTTGAGGGGCTTATCACACCGGGACGACTAAAACATCTAAAAGAAGAACTTAAAAGGATCGTGGATGTTTCCGAGGGCTGTATTAATATCTATTCTCTGGAAACTCTTAGATACTCCCAAAAAGAAAGTATTGGAAAACAGGTGTACCACGGGAACATACTATAAGATATCTTATGAAAAAGCTTACAACGGCAGATGTTTTTATCCCTGAACAGATTGAAGAAGCTCTATCTCATCTGTCTACTAAAAAAGATACTTGTGAAATAGATGGACTTCATCTTTCTGAATTAAGGGATTATTGGGATATTAATGGAGAGAGATACCTTTCCATGCTGCGTGCCGGAAAGTACAAACCGGG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.29, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGTACCTTACCTATAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //