Array 1 201668-200620 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLIM01000002.1 Riemerella anatipestifer strain RCAD0146 RCAD0146_NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 201667 47 100.0 30 ............................................... GCGGCGCTGGCGCTGAAACAGGCCAGCGGC 201590 47 100.0 30 ............................................... GATGCCAATCCAGGGCTCTGCCGCCAGGTA 201513 47 100.0 30 ............................................... ACATTAGTGTGCGACCCTAAAGAGACAGAG 201436 47 100.0 30 ............................................... TTCAATTGTGAGGTTGTTGCTCCTCCGCCG 201359 47 100.0 30 ............................................... CCGATATAAATATTTTTTTCGTTTTGGTAT 201282 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 201205 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 201128 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 201051 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 200974 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 200897 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 200820 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 200743 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 200666 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 98.0 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 175-1773 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLIM01000005.1 Riemerella anatipestifer strain RCAD0146 RCAD0146_NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 175 35 83.3 79 .......G........-.....TT....T...G... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC C,A [200,207] 291 35 83.3 79 ................-.....TA..T.T...G... TCCGCTGAAAATATAACGAAGCTGTGAGTAAAATGAGAGTAGTCCCAACAGACCTAGCAGATGACGGTAAACTAAACGG CT,A [313,324] 408 35 83.3 82 .......G........-.....TT....T...G... TCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT C,A [433,440] 527 35 83.3 81 .....T..........-.....CT....T...G... TCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA C,A [552,559] 645 35 83.3 80 .......G........-.....TT....T...G... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC C,A [670,677] 762 35 86.1 80 ................-.....CT....T...G... TCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT T,A [787,794] 879 36 97.2 30 ...................G................ ATAGCAGTAGAACCATCAAACGCTGTGGCT 945 36 97.2 30 ...................G................ CGGCAACAAAAGAAGGAGAAGAACAAAGCA 1011 36 97.2 30 ...................G................ AGCAACATATACGAAAATCCAGAAATCTTA 1077 36 97.2 30 ...................G................ TGTGCTTCCTACAACGAGTAGCGTTCCTTT 1143 36 97.2 30 ...................G................ TTAACTAAGTTACCTAGAAGTATAAATGAA 1209 36 100.0 30 .................................... TCTGCATCTACGAAGGTGATGAGGAAAAGG 1275 36 100.0 30 .................................... CAATAGGACCTATTATATTTACAACAACAG 1341 36 100.0 30 .................................... CAACTTGTCCGAGCGGCAACGTCTCTGATA 1407 36 100.0 30 .................................... ATTTTGAAAATATAGAGGCGATAAGCCTTT 1473 36 100.0 30 .................................... ATTCTAAAAGGTACAGAGAATGAAGCTAAA 1539 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 1605 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 1671 36 100.0 31 .................................... TCACAAACGGAAAAATATGTTTATTCCGTTG 1738 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 20 36 94.0 46 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : CGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGCGTTGTGAATACCCTTCAAATGCTTAAGTATTCACGAACTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAATG # Right flank : CTTAGGAGCAAATAAGCTGTATTTATTGGTGTTGTGAATACCCTTCAAATGCTGTGCATTATTGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGT # Questionable array : NO Score: 4.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.06, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [48-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //