Array 1 9572-9238 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNTZ01000031.1 Companilactobacillus bobalius strain DSM 13238 contig_125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9571 29 96.6 32 ............................A GACTGGGTTAAATAGTGAATTGACATACAGTA 9510 29 100.0 32 ............................. ATAGTTTTGTATGCTATCACCTCCCTAAAATC 9449 29 100.0 33 ............................. GTCAAAGAAGACGTAATCAAGTTTATCAAAGAA 9387 29 100.0 32 ............................. GGCAGCCATCGTCACTGTCTTGCCCGAACCGG 9326 29 100.0 32 ............................. ACCAAAGAGCCACATGCACCACTGTCCTCTGA 9265 28 82.8 0 ...T..........T...A..-.....T. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 96.6 32 GTGCTCCCCATATACATGGGGATGATTCT # Left flank : AAATGGATACTGGTAGGTGGATTCCGATAAATGATAGTGGAGCTATGTTGAATAGTGCAGGATTTAGTAAATTAGGAAATAATTCTCTTACTGAATTTATAGGACCAGGAAAATGGTTGATGAATGCAAATAGAGACGGCCTTAAATCAGGTGTCTATTCTGGAAAAATAACGTGGAGCGCTATTGATGGAATTCCTAATAATTAATAAGTGGACTTGAAAATATTATAAAAGCGTATAGGTAAGTGCTATTACTAGTATTGAGAGTCTGGGAAAAATTACAAATAAAAGAAGATTCAGAAATTGCTTTGATTTCTGAATCTTCTTTTTTGTGTACATGAATTTAGAAAGTTTTTGTTAGTTATTGAAAACTTGAAATAGAGTTGCTTACAATAGAAGAGAAAGTTATGCTTTAAGAGATTGATGAACTTACTTTTTCAAGTTAATAAAAATAAGTGGATTTCTAATTTTAAAGTGTTGATATATCAGTCTTTTCTTAGT # Right flank : CAAATAAAAAAAGATGCCTATGTCAAAACACTGAATGCTTTGATATGGGCGTCTTTTATTGTGTAATGTGTCGTTGATGGAAAATACCGAAGCCTTTAATTGCGAGACTGGAGATACCGACTGACATGACAGCTAGTAGGAAAGAAATTAAATCATTTAAGGCAAAGTTTCCTAAACAAACTAATCCATCAATAATGAATAGACTGATATATTTATCTACACCGAAGTTTTTATGAATAATCATTGGGGGAACTGTTGTCCCACCACTAGACATGTTGAGAGTATAAAGAATAGCTAAACCAATTCCAAAAATGATACTTCCTACTATAATAGAGATTACTCGATTATTAGGAATTAAATTGTAAACCGGTGTGATATATAGCAAGAGGGGAAGCATGAAACTTCCAATTGCTAATTTAATGGTGGTTTGTCGATCTAAATGTATGTAAGCCAGTACTAACATCACAATATTTATGGAAAGAACCGAGATGAATGTTGGG # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATATACATGGGGATGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 158-368 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNTZ01000019.1 Companilactobacillus bobalius strain DSM 13238 contig_114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 158 28 100.0 33 ............................ TCATTTGTTGCAACTTGGAAAAATACTCTGTCA 219 28 100.0 33 ............................ TCACTAATGCAAAGCCAGATGTATCTAGTTTTG 280 28 100.0 33 ............................ CAGCGCCTATTGTGGCTGGTTTTGGTTATGCCG 341 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GAATCATCCCCATGTATATGGGGAGCAC # Left flank : GGCGTCCCCGGAAATGTTTAGGGTGGAAAACGCCACTCCAAGTCTTCTTTGGTGACTTGTCCGAAAAATTCGATTAATTGTTGCAATCTACCTTAAATATAAAATAATTGGTTTCCTATTTCATACACTAACCATTAAATTATAACCATATTTAATAG # Right flank : CACTTAAAAAAAGCCGTTACATAGGCATTTTCAAATTACAAGGTTGCCGTTTTTTATTAACTTCTCTGCTAAAGACAACGTAGCTTGAGCATCAGATAATGCATGATGTGGATCTAAATTCTCTATCTGATATGCCTCCAAGACAGTTGTTAAACGATAGTTATCTAAAAACTCCTGAGTTGTTTTTACTATTGGCATAAGATCGTGGGTAGAGTTAGTAAATTCGGTTTTTCCAACTTTCCGCAATGCTTCCGTTAAAAACCCTTCATCAAATTCAAGATTATAACCGATGATGACTGAATCCTTAACAAAATCAGACAATGCCTCTAATCCTAATGAAAGCTCAACACCCTGTTTTTGCAACTGTTCTGAAGTGATTCCGGTAAGTTCAGTAATTTTGGATGGTACTAAATCCACACTTCGAATTAATTTTTCAAATTGCAGTAATTGTCCGTCGGGCATTATCTTGGCTGCTCCAATTGAAATAATTTCTGCTTTAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATCCCCATGTATATGGGGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 10283-10073 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNTZ01000019.1 Companilactobacillus bobalius strain DSM 13238 contig_114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10282 28 100.0 33 ............................ TGTGTGGACCTTGGTTTAAATAGGTGGTCCTTC 10221 28 100.0 33 ............................ CGTTGTGAAGCAATTCCTCCACACCTGTTACGC 10160 28 100.0 33 ............................ TGGTTCGGCCAAGCATCCACGGCCTAAGTATAA 10099 27 75.0 0 ..GT.......A..C.....-...G..T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 93.8 33 GTACTCCCCATGTATATGGGGATGATTC # Left flank : TTTATA # Right flank : TAATTAGAGCCAAGAGCTCTTTTTTTATCATAATTTTTTCAGAAGTGAAATTGTACCGTAAATAGATTTAGTCATGAGCTAATTTGTAATGAGGTTAGATATTAGAAAGTAAATTTTCATTTCTTACAAGTCTAACTATATTAATAGTGGCATAATAAAGATAACGATTACATTGCCGTTTGCGTAGATAAATTTGAAAGATAATCTCTCTAAAAAGGGGAAATATTAAATGTCAGTAAAATTAACGAGTAGAGAAACTAGTTTATGGGCAAAAAAACATGTAGATGATGGGGAAATGTTGTGGCTTCCATTAGTTGCCCACTTAGTAGATTGCAGTCATGTGATGAATTGGCTTTTTTATCATTGGTTAAATGCCGGTCAAAGAGAATTGTTAACTCAGTCGGTTTCTGAAGAAGACATGCAAAAGCTAATTAAATTTTTGGGATTCTTTCATGATATTGGGAAAGCCACACCGGCTTTTCAAACAAAAAAATCTTACG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCATGTATATGGGGATGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 11041-10282 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNTZ01000066.1 Companilactobacillus bobalius strain DSM 13238 contig_157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11040 28 100.0 33 ............................ TGTCAAGGTTAATATTCGCTATTTTTGTCATTT 10979 28 100.0 33 ............................ CATTAGCCGAGGATACTCCTGTTAGTACGGAAG 10918 28 100.0 33 ............................ CTTTTGTGCTTGGATATCATCTACTTCATTATT 10857 28 100.0 33 ............................ CGTGTCCAGCTTGTATTTGTTTTTTCATCATGG 10796 28 100.0 33 ............................ CTAAGTCGCAGTTACCATTCACAACGTTGTAAT 10735 28 100.0 33 ............................ CAAACTCGTTCAATACTTTCATCCCCTTTATAA 10674 28 100.0 33 ............................ TGTGTGGACCTTGGTTTAAATAGGTGGTCCTTC 10613 28 100.0 33 ............................ TACAAGCATGAACATGTTTATAAATTAGTGAAA 10552 28 100.0 33 ............................ TAATGACGAACGGTTAGGCGATTGGGAACCCGA 10491 28 100.0 33 ............................ TGTGTGGACCTTGGTTTAAATAGGTGGTCCTTC 10430 28 100.0 33 ............................ CGTTGTGAAGCAATTCCTCCACACCTGTTACGC 10369 28 100.0 33 ............................ TGGTTCGGCCAAGCATCCACGGCCTAAGTATAA 10308 27 75.0 0 ..GT.......A..C.....-...G..T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.1 33 GTACTCCCCATGTATATGGGGATGATTC # Left flank : TATTTGGTTCCTTAGGGGATAGGGATACTTTCAAAAAGTGTTCATTGATGATCAACTACGCAAGTGTGAGACGAGAGCAGCAGCAATTATACAGCCACGGTGGTCGTTTATACTTGATACAAGCACAGGCTGAAACGGTTGAGGATGCTCAAACAAAAGTTTATCAAGAACTTGAAAAAATGGATCAAACAAATATTTTTTATCGACGAGATATTGGTAAGAACTCCATTTAGTTCAAAAAGGTAGAAGTAAGATTTCGTTTGAAATATTACTTCTACCTTTTTATTTGAATCGATATCTTAGAATTTTGAGTTTTTGAAAAATTTATAGACATAGATATTTAGAGTATTTTTTATTGGTCATTGAAACTATTGAAAATAGCGTTGCATAGAACGAAAAAGAAAGTTATTCTTTAAGAAATTGGTAATCTTATTGGACAAGTTAATAAAAATAAGTGGTTTTCTAATTTTAAAATGTTGATCTAACGGTCTTTTCTTAGT # Right flank : TAATTAGAGCCAAGAGCTCTTTTTTTATCATAATTTTTTCAGAAGTGAAATTGTACCGTAAATAGATTTAGTCATGAGCTAATTTGTAATGAGGTTAGATATTAGAAAGTAAATTTTCATTTCTTACAAGTCTAACTATATTAATAGTGGCATAATAAAGATAACGATTACATTGCCGTTTGCGTAGATAAATTTGAAAGATAATCTCTCTAAAAAGGGGAAATATTAAATGTCAGTAAAATTAACGAGTAGAGAAACTAGTTTATGGGCAAAAAAACATGTAGATGATGGGGAAATGTTGTGGCTTCCATTAGTTGCCCACTTAGTAGATTGCAGTCATGTGATGAATTGGCTTTTTTATCATTGGTTAAATGCCGGTCAAAGAGAATTGTTAACTCAGTCGGTTTCTGAAGAAGACATGCAAAAGCTAATTAAATTTTTGGGATTCTTTCATGATATTGGGAAAGCCACACCGGCTTTTCAAACAAAAAAATCTTACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCATGTATATGGGGATGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //