Array 1 107756-106279 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPY01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1000 NODE_10_length_170389_cov_37.7712_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107755 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107694 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107632 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107571 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107510 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107449 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107388 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107327 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107266 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107205 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107144 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107083 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107022 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106960 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106857 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106796 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106735 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106674 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106613 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106552 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106491 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106430 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106369 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106308 29 96.6 0 A............................ | A [106281] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125198-123888 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPY01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1000 NODE_10_length_170389_cov_37.7712_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125197 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125136 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125075 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125014 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 124953 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124892 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124831 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124770 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124709 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124648 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124587 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124526 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124465 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124403 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124342 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124281 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124220 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124159 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124098 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124037 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123976 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123915 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //