Array 1 523648-524323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028392.1 Listeria monocytogenes strain 2016TE2013 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523648 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523713 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 523777 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 523843 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 523907 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 523970 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524034 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524099 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524163 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524229 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524252] 524295 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2631503-2629485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028392.1 Listeria monocytogenes strain 2016TE2013 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2631502 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTGTTGA 2631436 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2631370 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2631304 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2631238 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2631171 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2631105 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2631039 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2630973 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2630907 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2630841 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2630775 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2630709 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2630643 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2630577 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2630511 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2630445 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2630379 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2630313 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2630247 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2630181 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2630114 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2630048 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2629982 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2629916 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2629850 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2629784 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2629718 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2629652 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2629586 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2629520 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //