Array 1 199945-194427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBNX010000009.1 Burkholderia guangdongensis strain DHOM02 scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 199944 29 100.0 32 ............................. TTTCTCGGCGACTTCCGCGCATGGAACCGCGA 199883 29 100.0 32 ............................. CGACCAAACAGGCGCCGGCACAACCTTCCGGA 199822 29 100.0 32 ............................. TGCGCGCGATTTTCGTTGACGGCGCGCACGAT 199761 29 100.0 32 ............................. GGATGGAAGCCGCGCCCGCCAGTGGCGGCCTG 199700 29 100.0 32 ............................. CGTACGTTCAATCCGGCGGGCGTGCCGGACTT 199639 29 100.0 32 ............................. TCCTCGAGGCGAATCGCGCACTCGTCACAGAG 199578 29 100.0 32 ............................. AACCGCGAAATCGCCGGGTCGGCCGTGCCGTT 199517 29 100.0 32 ............................. AGATGAGTGCGTATTTCAGGCCGAGATAGCCG 199456 29 100.0 32 ............................. ATCTGGCTGAGCTCGGCATCCTGAAACCCGAG 199395 29 100.0 32 ............................. ACTTGGATATTGAGCAGTGTGCCAAGCGGGTG 199334 29 100.0 32 ............................. CGCTTCTTCCGTTCCTCTTCCTGCTGGATCTG 199273 29 100.0 32 ............................. ATCTACGACCCGGAGAGGGAAGGCAATGAGCA 199212 29 100.0 32 ............................. CAATCTCGACGGCTCGGGCTGGACCGTCTCGA 199151 29 100.0 32 ............................. TGCAATCCGGAATGGGCGAGCCTGCCGGGGTC 199090 29 100.0 32 ............................. TCACAGTACTCGAGCGCCGGCAGGATCTGCTG 199029 29 100.0 32 ............................. CTGGTGGTTATGCGCCGGCTCGCGCTCCAGAA 198968 29 100.0 32 ............................. CGAAAATCGACCAGCCAGTATCGCCATATACC 198907 29 100.0 32 ............................. GTTCCGGGCCAGATGTAGCGCCTTGTCGGCGC 198846 29 100.0 32 ............................. CCGCGCAGCGCCGTGATATCCGACTTGCTGAA 198785 29 100.0 32 ............................. GGCACGCCGGCATCGATCCAGATGGCGCTGAC 198724 29 100.0 32 ............................. CGATAGACGGCGCCCCAGTCACCTTGCACACC 198663 29 100.0 32 ............................. TCGGAAACAGTTCGGTGTTCTCTTTGCCGGCC 198602 29 100.0 32 ............................. CGCGTGCACTTCGCGCACGGCGGCAACCTCAC 198541 29 96.6 32 ........A.................... GGCAGGGGTTCGACGCCGGCAAGATGGTGCAG 198480 29 100.0 32 ............................. GTTGCCGAATTGGTGATCTTTCGAGGCTAGAG 198419 29 96.6 32 ............................A AGGCATCGATCCAGCGGATTACGGTCATCAAC 198358 29 100.0 32 ............................. CCAGCAAATGCGTCGATCGAGAAGACGATGTC 198297 29 100.0 32 ............................. AGTTCACTCACGTATGAGCCGAGCGATAAGAA 198236 29 100.0 32 ............................. CCACGCAAGCGGGGCTTGTCGCGCAAGGGCAG 198175 29 100.0 32 ............................. AACGGGATCGTGATCTGGGACAACGTGCTGAA 198114 29 100.0 32 ............................. CCTTTCTTCAAATGATTCGTGTCGGCGAGGGC 198053 29 100.0 32 ............................. GCTATATGAGCGCGGCCACCTAGTTATCTGCC 197992 29 100.0 32 ............................. TCAGAACGCGGGCGGCCCGGTCCACATCGTTG 197931 29 100.0 32 ............................. GTCCAAACGCCGTTTCACAGCGTCCAGATACT 197870 29 100.0 32 ............................. TCATGCGCGAACTATCGCTATCACGTCCAGCA 197809 29 96.6 32 ............................T TCACCAGGTAGGTGCCGTAGTTGCCTTGCACC 197748 29 100.0 32 ............................. CCGACGAGCGGCGGCGGCTTCGATGAAATGGA 197687 29 100.0 32 ............................. CGCAGATCGGCACCTTCTTTGCCCGTTATCAG 197626 29 100.0 32 ............................. CCGCCAGAGCGCTGCAGGCCGTCGAGTGGTGC 197565 29 100.0 32 ............................. CTGTTCCGTCGATGTGTCGTACGGCGGCACGA 197504 29 100.0 32 ............................. CTCTATGGAGCAACGTATCGAAGCGTCGTGTC 197443 28 96.6 32 .....-....................... TCGAAATCGAACGCGATATCGCCCGCCGCGAT 197383 29 100.0 32 ............................. GTGGGGATGACGCGCGTCACGGCACGTCAGGA 197322 29 100.0 32 ............................. CCATTAATGGGCATCAGGTCCGCGTCGTAAAT 197261 29 100.0 32 ............................. CTTTCACGCCTGGTCGGAGAGGGATGTCAGCC 197200 29 100.0 32 ............................. GCGCACGGATCGTTATCGGCCTCGGCGGCGTC 197139 29 100.0 32 ............................. GCCGCGTTGATGTCGTCGATGGTGATCATGCG 197078 29 100.0 32 ............................. GCGGCCTGCAGGAGGCGCCCTTCGCGACGGTT 197017 29 100.0 32 ............................. GAATACGCGCAGCTGCTCACCGACACCGCGAA 196956 29 100.0 32 ............................. GAAATGAAACCGATCGATTATCCGAAGCTGGC 196895 29 100.0 32 ............................. CAAACACGCACTCTGGATCGCGCTGGCGGTGC 196834 29 100.0 32 ............................. GCGATGCTGCGCCCGCTGCTCGAATCACGGTT 196773 29 100.0 32 ............................. ACCGGGCGCGGGATGCCATCTCGGCGGCGGTA 196712 29 100.0 32 ............................. ATTCATCCCGGTAGGCGCGAAAACCGGACCGG 196651 29 100.0 32 ............................. GCATCGGCCCGCGCGCCGGTCCCGCCGATATC 196590 29 100.0 32 ............................. GAGCGCATCGATTTGCTACCCCCTTTGCTTCG 196529 29 100.0 32 ............................. TGCTGATGGTGTTCAACACGCCGGGCGGCAGT 196468 29 100.0 32 ............................. CGCAACCTGCGCGGCGCGCACGACATTATCCA 196407 29 100.0 32 ............................. TCGAGCTACGTCAAACGGCTGATGGAGCGCGC 196346 29 100.0 32 ............................. CGCGACTACGGTTGCAGCGTGCGCATCGAGTT 196285 29 100.0 32 ............................. TCGATGGACGGCAGCAGCGTCGGGTCACTGGA 196224 29 100.0 32 ............................. TTCCGTCTGATTTTGCGCGCCGACGGTTTGAA 196163 29 100.0 32 ............................. AAAAAGCGGGGCGGTTTCGGCGCCCCTAAATC 196102 29 100.0 32 ............................. ACGCGCAGCTTCGCGAAGATGGTGGCCGTGAA 196041 29 100.0 32 ............................. GTTACGACGCTCGATGTTCATCGCCTCGAGGC 195980 29 100.0 32 ............................. GTGACCAGCGACAGCAGAATGGACGCCAGCGC 195919 29 100.0 32 ............................. GCGGGGCTCCCATCGGCGGATCGCGTCAGCGG 195858 29 100.0 32 ............................. AATCGTCGGAAGCAGTTCCGTCTTGGCACTCA 195797 29 100.0 32 ............................. CGCAGTGCCGAATCGTTCATGGCTTCGCAGGA 195736 29 100.0 32 ............................. AATGCGCCGCTATTTTCGGTCACGACCACGGT 195675 29 100.0 32 ............................. GAATGACCATGAAACTGAGCGATATCCTGGCT 195614 29 100.0 32 ............................. ATGCATTGAAGAAGCCTCTATCATGGCCGTTC 195553 29 100.0 32 ............................. GTGGACAGATTCATCGGCGCGTCCACAAGCTC 195492 29 100.0 32 ............................. GTCAATATCGCTCGCGCGCTCGCCTCGGTGCG 195431 29 100.0 32 ............................. CTGAAACGGGCCACTTCGTCGTTGGTCAGACC 195370 29 100.0 32 ............................. TCTCATCCGTCTATGCGAAGGCCACCGAGCTC 195309 29 100.0 32 ............................. AAACTCACGCTCCAGCAGCAAAGCCTGGTCGC 195248 29 100.0 32 ............................. GCGCGGGGCGAGGTTTCTCCACTTCGGGTGAG 195187 29 100.0 32 ............................. GCGGACAAGACGGGCCTGTTGCTGGTCGCAGC 195126 29 100.0 32 ............................. CGAATGCGCCTTGCGTGACCTTTCATTCCAAT 195065 29 96.6 32 .......T..................... TCGCCACCACCGAACGAGCCGGTCGTGCCGTT 195004 29 100.0 32 ............................. AGCGCGGCATCGTGCACGGCGAGTTGACGATC 194943 29 100.0 32 ............................. CATGGGAGGCAATTTCGGTACCGGTGCTCGCC 194882 29 100.0 32 ............................. TCGAGCTACGTCAAACGGCTGATGGAGCGCGC 194821 29 100.0 32 ............................. TCGCGGCGGCATTCGACGCGACCCCGGCGCAG 194760 29 100.0 32 ............................. ATTGCCAGCAGCCCGACACCGTTCGCGGTCGT 194699 29 100.0 32 ............................. ACGGATGCGCGGATTGCCATTCCGACGGCGCT 194638 29 100.0 32 ............................. ATGGGATGGAAAGCGTGGGCGTACTGGCAAAA 194577 29 100.0 32 ............................. TCGTATGGGCGTAATGGCGCTGATACGACTAC 194516 29 86.2 32 .........A..AGG.............. TCGCTTTCGATCAACGGCCGGGATCTCGCGGT 194455 29 75.9 0 ............AG.....TA.GC.C... | ========== ====== ====== ====== ============================= ================================ ================== 91 29 99.4 32 GTGTTCCCCGCGGACGCGGGGATGAACCG # Left flank : ATCATTCCGGACATCGAGACGCTGCTGGACGCCGGTGAGCTTGCCAAGCCGCAAGCGCAGGGTGTGGTGGACGCGGCGTTCCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCCCCGCCGCGGCTGCGCGGGCGGATGGCGATCTGGTTGCTGGAGATCCGCGCCGGCGTTTACGTGGGCAACTACAACCGCAAAATCCGCGACTACCTGTGGCAGCAAGTGGAAGAGGGGCTGGAAGACGGCAACGCGGTGATGGCCTGGCAGGCCACTACTGAGGCCGGCTTCGACTTCGTTACGATAGGCGCCAACCGTCGCATGCCGGCGGAGTTTGACGGTGCCAAGCTGGTGTCTTTCCTTCCGCCGCCGCAATCTGGCGATGCAGGCGAATAACGCCGGACGTTATGGGGGCTGGTTTCGTTCTTTAAAAATCGGTAGATTTTCGGACGGGGTTTTTGCTTCGAAAAATCAATTGTTTGCCATTGGT # Right flank : GTGACGACACCCCACAGCGTAAATTGCCACCAATCAGGCGGCGGATGCCCACGATACGGCAGAAGCGCGACGATATCGTCGGCGCGGTGGGTCGGCAGGCGATCGAGCACGTCTTTCAAATAGACGCAGGGATCATGGCCGTTGAGCTGCGCCGATCGAATCAGGCGCATGACCGCAGCCCGTTTCCCGGCGCGCAGTGAACCGGCGAACAACCAATACGAGCGCCCCGCCGCAAGCTCGTGTTCATTCTGCCCATATCGGGCAAGAAGTCGAAGCCCATTATCGTTGGCATCCGCTTTATGGTCGCCGCGTCAAGGTTCGAGACGTCGAGAATCGCAGCGGCGGCCGCGTCCTGCATATCGAAGCCGGCTCTGACGTAGTCAAGGTATTGGCGGCGTAGATGCTCGATCGGGCCGTTTGCTAAGCCATGGAGCTCGGCGAGCCGAGGGTTACCGTGGCGGTGCTATGCGCCCTGCATCGGCTGCTTGTTGATCCGGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //