Array 1 1899-1673 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000029.1 Clostridium haemolyticum strain KFSHRC_CH1 c124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1898 29 100.0 38 ............................. TATTGGACAAAGTTTATCTAATGTAATGGAACAAATAG 1831 29 100.0 36 ............................. AGTTACTTTTTTTGTTTTTTCTTCTCCCGTTTTCTT 1766 29 100.0 35 ............................. TGCGTCAAAAACCATTTCTCCATTGTCTAATTTTA 1702 29 96.6 0 ............................T | C [1677] ========== ====== ====== ====== ============================= ====================================== ================== 4 29 99.2 37 GTTGAACATTAACATAAGATGTATTTAAA # Left flank : AATAGAAGCCAATGCATGTGTAGATCATATACATATGTTAGTATCGATACCACCTAAAATGAGTATATCTAGTTTTGTAGGGTTTTTAAAAGGGAAAAGTAGTTTAATGATATTTGAAAAGTTTGCAAATTTAAAATATAGATATGGAAATAGACATTTTTGGTGCAGAGGATATTATGTAGATACAGTAGGAAGAAATAAAAAAGCAATTACGGAATATATAAAAAATCAACAAAAAGAAGATATGATATCAGATCAAATAAGCTTAAAAGAGTATATGGACCCTTTTAAGGGTAGCAAGTAACAAAAGATGCGGCTGGCGGGCTTTTATAAGCGCCTTAAGGCGCAACGCAGGTAAGGTGTCCTTATAGGACGATAGAAATACCACCAGCTAAGCTGGTGGATTATTATTTTAGTTACAATTGGCAATAAGATTACTC # Right flank : AAAAATTAGTTAAATACTAATACAACTTATTATAAAAAAATATTATAAATAATAAAAAATTATGTGTATTTTAAAAATTTACTATAAATTAATAAAAAAATAACTATAATATTCAAAAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGAGGTATCCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCAGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTCTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [93.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1027-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000026.1 Clostridium haemolyticum strain KFSHRC_CH1 c121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1026 29 100.0 38 ............................. ATAAATACATTATAATTATTAGATGTATTAAATAATAT 959 29 100.0 36 ............................. ATTCTTCTTGTAAACGAGCATATTTATTTTTTATAG 894 29 100.0 35 ............................. CTCGACTTCACCAGCCTTGCTCTTACTTCATATTC 830 29 100.0 38 ............................. TATCTCCTTTTATGTAATTATTTTTTGTTTCGTCCCAT 763 29 100.0 36 ............................. AATTTATTTTGCAGGATATATTGCTACAAGCTAGAA 698 29 100.0 37 ............................. TATCTTTTTTACGTGCTTGAAGTTTATAAAGAATAAC 632 29 100.0 37 ............................. TATTTAACAATTAATAACATGATTATATCTAAATTTT 566 29 100.0 39 ............................. TTACATTCTGTATGATGCAGTACAATATTTTTCGGACTA 498 29 100.0 36 ............................. AGGACTTTAGATAGATTTTTATAAGCTTCTTCCAGA 433 29 100.0 37 ............................. TAGTAGATCTCGTACCAATTGTCATGTTTTTTAAAAA 367 29 100.0 36 ............................. CTTTTAATATCTTTAAATATAATAGCTTCTTTATGA 302 29 100.0 37 ............................. TAGATTCATTGTATTTTTTCATTCCTGTGTCACTTGT 236 29 100.0 39 ............................. CCATTAGTGATATTGCCCTATTACGAATTGTGTAACAAG 168 29 100.0 37 ............................. GCTTGATAATATAAGTCATAAAGCTTATTGTAACTAA 102 29 100.0 36 ............................. ATCTCATATTCAACTCTAGCTAAGTTTATTGGTTCT 37 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 16 29 100.0 37 GTTTTAGTTTAACTATGTGAAATGTAAAT # Left flank : TAATTATGAAGAAGGACAAAGAGAATCTCAAGCTGATTTTATATGCAAAAAATGTGGTTATAAAGTTAATGCTGATTATAATGCAGCTAGAAATATCGCTATGAGTAATAAATATATAACAAAAAAAGAAGAAAGTAAGTATTACAAAATTAAAGAAAGTATGGTATAATAAAACATAGTTAAACTAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGAAGTTTTTTCTACTCGGCAAGGGTTAATCTCGATTGTTGTGTTACCGATCGAGCGTTTCACAAAATGCGAGAGAAATCTCGCATTTTTAATTTTGCAGTAAGGCTAGTTTTTATATAAATATGCTATAACCATTGATATTGCTAGGCTACAATAGGTTTTATTAAAAAAGCAAAAAACATTACTGAAGGTTCACTGCAAAATAGTGTATTTAAGTGAAAGTGAGATTGCTTGTAAAGCTAGGAGTATCAATATATTTATAAATTTCAAAATTTAGG # Right flank : TTTTAATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTAACTATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 11551-10935 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000026.1 Clostridium haemolyticum strain KFSHRC_CH1 c121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 11550 30 100.0 34 .............................. TTTATAGGGAATGTCTTTTGCTTTCTGGTCTTGG 11486 30 100.0 36 .............................. AGTTTTTTTGCTTTGTTTTCTATTATTTTATCCTGT 11420 30 100.0 36 .............................. GGAAAAATTAGCAAGAAAAATTGAATGTTCCGTAAA 11354 30 100.0 35 .............................. TTCAACTCTTTTAGCTTACTAAGCATTTCTAAAAC 11289 30 100.0 35 .............................. TAGTGTAAAAGCGAGTTTTTCATAGTAGAAAAAAC 11224 30 100.0 36 .............................. TTTAAAATTTCATCACAAAGCCCTAGACTTTTACAC 11158 30 100.0 34 .............................. GTAAGAATTATATTTTAATTCTTACTATCCCCCT 11094 30 100.0 36 .............................. TTCGCAAGCTCTTTTATATTGCCAATATAAGTGTCT 11028 30 96.7 35 .........T.................... TAGTGTAAAAGCGAGTTTTTCATAGTAGAAAAAAC 10963 29 76.7 0 ..................T.-.AA..C.TA | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 97.3 35 GTTGAGAATCAACAAAGGATATGTTTAAGC # Left flank : AATATACTTAATAAAGATAAAGAATATGAGTTTACTGTTGAGGATGAAGTTATAGCATATGACCAGATTAAAAAACTTTATGAGGCTATGGATAAACTGGAACCATTGGAAAGGGAAATTATCAGCAGATACTATATTAATAATGAAAAATTTAAGGATATTGCAGAAGATAAAAAGCTTTTATATGATAGGACTATTTATTTGAGGAGGAGAGCCATTAGGAAACTTAGAGGGATCATGGAAAAAAAACAATAAATTTAAAATATTATCATATAAAAATTGAATAAATATAATCGTATGTGTTAAAAATATAAATAAAATTATTACCAACCATAAAGGTCGACTTAGCGTCCTAAAATTGAGTAGTACCAATAAGTCTAATAAGATTAGCATGGCAACTCTCAGTAAGCCTCAATTTGATTGGGAAGCTTTGTGCAGATGCTAGTAATAGCAAGGCGTACAATGATATATCCATATTTAAAAATGGCTTAGATACAGAG # Right flank : TAATAAATAAGTTTAAAATTAGTGTTTATTGGAAATATTATAAATATATATAATATTTTAGGTAAGGAAGATAAAACATGAATAAATGTATAAAAGTAGCCATAAAGAATTGTAAGGAACTAGATTATAAAGTTATGAGTGAAAAATTAAGAAATATACAATACTTAACATGTAAAGCTAGTAATAAAGCCATGCAAATGTATTATATGTGGGAGAATCAGAAAATAGATATTAAGAATAAAACAGGAGAATATCCTAATGATAAAGAATTATTTGGAAAAACCTATAGAAATGTAGTTGAAGGTGAAATGAAAACTATAATGAATACCATAAATACATCTAGTGTAGGTCAAACCAATGCAATTATAATGAAAAAGTGGAATACTGATAAAAAAGAAGTTCTATCATATCAAAAATCTTTACCTAATTTTAAATTAAATATGCCTATATACATAAAAAATAAAAGCTTTTCAATAGTAAAAGGTACAAGTGGATATGAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCAACAAAGGATATGTTTAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 3293-291 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000411.1 Clostridium haemolyticum strain KFSHRC_CH1 c69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 3292 29 100.0 38 ............................. TTTTTTAATAGCAAATTGAAAATTATTAGACGTTTTTT 3225 29 100.0 37 ............................. TAAATTATTATCTACGTTATTTACATTATTAGAAACA 3159 29 100.0 38 ............................. CTAGGTTTTTTTTTATGTCTAGTATCCTAAAAAACAAG 3092 29 100.0 36 ............................. ACTCTTGTGATGACTTGAGCGACTTTGAACGTCCAT 3027 29 100.0 36 ............................. AAACCAACTAAAAAAGCTACTGTAGATCTTAAAAAA 2962 29 100.0 39 ............................. CCATGTTCAAGTAAAGGGGTACTAGGACAGGTATTAACA 2894 29 100.0 38 ............................. ACGGAAGAGGCACAAGGTGCACTACTTAGAGTATTAGA 2827 29 100.0 39 ............................. ATGTTCAAGTAAAGAGTACTAAGACGGGTATTTAGCACA 2759 29 100.0 36 ............................. ACTTTATAACTGCATATTCTAATTTGTGTGTAACTT 2694 29 100.0 37 ............................. AATGCATCTGCTGCATCTTTTGCACTTTTACTAGTAG 2628 29 100.0 37 ............................. TTTGGAAGCGTTCTAGGTATATTAAAAATTGGTTCAA 2562 29 100.0 35 ............................. GGTATTGCTTCTTCTAAATCCTCTTTACTTATTTT 2498 29 100.0 41 ............................. TTTTTTTTTTTTGATAAAAACTTAGGAAAAATCAGGCTTAA 2428 29 100.0 36 ............................. TCATACTTCACAGCAACTGGACGAATTTCAATTACA 2363 29 100.0 36 ............................. TGGAATGAAAAACATTGGCTAAAGAAACGTTTTTTT 2298 29 100.0 35 ............................. AGCAATAGTTATCAAGATGTAGAGGACATAAATCA 2234 29 100.0 36 ............................. GCTTCAACATACTTAAATGTAATTCCAGTTAAAATT 2169 29 100.0 37 ............................. TGAGTAAATATTTTATAGAATCAACTTACAAAGATAA 2103 29 100.0 36 ............................. GAGATTTACTAGAAAAATATAGTTGTATTCAACATA 2038 29 100.0 36 ............................. CAAAAACTACATAAAAGGAGACTAAAGAATATGGAA 1973 29 100.0 36 ............................. CAAGGAGAATATCAATTTTTAGAAGTTATATACTTG 1908 29 100.0 39 ............................. CCCATAAAATATCTTACTGTTATCTCCCTTTTGTATTCC 1840 29 100.0 38 ............................. TACATAAATAAACCTTCTCGATTTTTGATATTGGTTAA 1773 29 100.0 39 ............................. AATGGAGGTATTTTCTTACCACAAAATATGGCTAGTGGA 1705 29 100.0 38 ............................. TTTTCTATATATCCAGCTTTTATCAGTTCATTTATTGT 1638 29 100.0 37 ............................. TCTGTACAAGATGATGAATAATTTATGTAATGTTTTT 1572 29 100.0 38 ............................. TGGGAAAATGAATGCGAATGTATTTCAGTGAAGGATAT 1505 29 100.0 37 ............................. AAGGTGACGTATTTGTTGTGTGGAGTTGTAAGACTTT 1439 29 100.0 37 ............................. CAACATAGACAAATTTTATGATCACTTTTATCTTTCT 1373 29 100.0 36 ............................. TGCGTTCGCTACGTCGTACACTTCTAGCGTATGCAA 1308 29 100.0 39 ............................. TTAGCTTAACGCTATAAATGCTGCCAAATTGGTCGGTAA 1240 29 100.0 37 ............................. ACGAAAGCAAAAAAGAATGAAGCTAAAGAAATAATTA 1174 29 100.0 39 ............................. GAAAACATCTTTACACCTCCTTAATAAAATTTATATTAA 1106 29 100.0 36 ............................. GGATTATTTAAACAAATAACTTTATCCTTTAACCCC 1041 29 100.0 37 ............................. AGATTAAATAAAGCTAATGCTCTAATTAGAGAAGCTT 975 29 100.0 36 ............................. GTTATAAACGCTGAACCTTCAACTTGTGCAAATCTA 910 29 100.0 35 ............................. ACCCCTAGGGAATGCACACCCTTTAATTCTCACAT 846 29 100.0 36 ............................. CGATTAATTCATTATAGAAAAAGCTTAATACATTGT 781 29 100.0 38 ............................. GTAGTTGTGTAATCCTCTAATATTTCCAGTTGTTCTAC 714 29 100.0 36 ............................. CTTTTCCTGAGATATATATATTTCAGGTTTATTAAA 649 29 100.0 35 ............................. TTTGTATTTTTCGATTATATAATCTACATCTTCCC 585 29 100.0 39 ............................. TCTTCAGCATTATCTAAATTCAACTCTTTATGTATTTTC 517 29 100.0 37 ............................. ACAAACGAGGGAATTGGGATTGACTTAGGACTAAAAG 451 29 100.0 37 ............................. TTCAAAACAGATATATCCTATGTCTATCATATTTCCT 385 29 100.0 37 ............................. ACAAATCGTTCCTGTTCGGTAATGCTTGACGTATTAA 319 29 93.1 0 .......................A...G. | ========== ====== ====== ====== ============================= ========================================= ================== 46 29 99.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATGAAAAATATAAACCTTTAAAGGCATGGTGGTAGTTAATGTTTGTTATATTAACCTATGATATTGAGGAAAAAAGAATAAATAGAGTAAGAAAACTATTAAAAAAAATATTTAACATGGACTCAAAATTCAGTATTTGAAGGAGAAATTACAGAAGGAAAATTGCATAAATGTTTATCTGAAATAAATAAACACATTGACAAAAAAACAGATTCAATATACATTTATAGGGTTAAGATAAGTAAAAATATAACGAAAGATGTAATAGGGATTGAAAAAAGTTTTGATGAATTATTTTTATAAATAAATAGAATTTGCAGTATTACAAACAAATGTTCTTATTGATTCAAAGCATTGATATATCTAGCATTAAGCATGTTATTTAACAAAAATAAAAAACATCATTGAAGGTTTACTGCAAAATTGTTTAAATTAGATGTGTAGCTGTTTGCTTCAAGAGCAGTACTATCAATGGTTTAAGGTGTTTTGAATCTTAGGGG # Right flank : TGCTACTATGGGAATGTAGAAAAGTGATCATTTAAGGATGTAAGAATTAGATTTATGTATAATACTATAATTATCAACATTTAAATCGGAGGTAATTATGATTATACAAATGAATATTAATTCTGAAATACAAATAGATAATTTAGAGGATCTTCATAAATTAAATTTAATTATGGAGGAAAATAATTTGAAAGTAAATAAAAGTCAAATAGCTAGAGAACTTGGCGTTGATCCACGCACCGTAGGTAAATATTTAAATGGATATGTAAAACCTACTACTAGAAATCGTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1150-1684 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000425.1 Clostridium haemolyticum strain KFSHRC_CH1 c71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1150 36 100.0 35 .................................... CTCTTATAATTCTTTTATCTAATTTTGCCTGTTGA 1221 36 100.0 34 .................................... ATGAAGCGACTAAAAATGACTTTTATCAAACACC 1291 36 100.0 37 .................................... AGGAATATAAACCTGTATTCTCTTTCCTCTAATGCTT 1364 36 100.0 37 .................................... ATATCAGCTTCATTACTATATAAAAATGATAAATTTG 1437 36 100.0 33 .................................... ATGCAAAACAACCTAAAAACAATTATCGATTGT 1506 36 100.0 35 .................................... TAAGAAAAAAGTTAGTATTAAAATATCTAACTACT 1577 36 100.0 36 .................................... ATAAGATTCCATAATTGAAATGATATTATTACGCTT 1649 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 100.0 35 GAATAAAAACATCTAAGCTCCATAGGAGATTGAAAC # Left flank : TATGAATTTAGAACAATACTAGAATATAAAGCTCATTGGTATGGTAGAGAATTAATAATTGCACCATCAAATTATGCAAGTAGTCAAATATGTTCTAATTGTGGTTACAAAAATAAAGAAGTAAAAAACTTAGAACTTAGAGAATGGGTATGTCCTAAATGTGGAATACATCATCATAGAGATATAAATGCAAGTAAAAATCTGCTGAAATTAGCAATATAATTTTGGTAATTATCTGAGGTCGGTGCGGTCTTGTAAGCTTGGGTAAACTTGTTCCCTTAGGAATATTGACCAAGAAGCTCCCACTTCAACGTAGTAAGTGGAGGGTAGTTCACTGCGCCAAGTTTAGTGTTTAAAAAAGTATGCTACCATGGCGATGGCTATAAATAGCCATTTTTATAGAATTTTTAATAACACTAATATGAAAATAAAACTAATAATAACCACTGTGCGAAAAATACTAGTCTATGGTAGCCTTTATAAGGCATAAAACGCCGGCT # Right flank : CAATAATTAAATCATATATTTTTCAAAGATTTTTTTAACTTTGAAATTTATATTCATGAAATTGTAAATGCGTCTTAAGATATTTTATAGCTAGTTTTAATATTTCACCTATTAAGATAATATCTAATTAAATTCTTATATAGTAAGATAAATTACAGTGTTGAAAAAATAAAGAAAAGAAATTAAAAGAAAGATGAGGTATACATATGAATAAAATTATAAATCAAGCTAAATTAATAAAAGATGACTTAATAAATTACAGAAGAACTATTCATAGTAATCCTGAAGTTGGTCCTAATCTACCAAAAACAAAAGCTTATGTAATGAATAAATTAAAAGAGTTTGGATATAATCCAAAGGAAATATGTGAAAGTGGCATAGTTGCTACAATTGAAGGAAATAAAACAGGAAAAACATTTTTACTTAGAGCTGACATGGATGGACTACCAATGGTAGAAGCCACTGAATGTGATTTTAAATCAACTAATGGCTGTATGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATAAAAACATCTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 4278-311 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000464.1 Clostridium haemolyticum strain KFSHRC_CH1 c85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 4277 30 100.0 37 .............................. CCGGCTTTTAACTGTTTATTTATTTTTATAAATTCTC 4210 30 100.0 36 .............................. GTCCATGTTTAGAACATTTGTATTGTATATCTTTAG 4144 30 100.0 36 .............................. ATAGGCAATCCTATAACAACCTTACATTCAATATTA 4078 30 100.0 35 .............................. ATATCTGTAGCCATTGCTACTATTGCTGCTGATAA 4013 30 100.0 37 .............................. TTTTTTTTTGGTCTTTGAGGTTTGTACAATGTCTTAG 3946 30 100.0 35 .............................. GTTTCTATATCGGTACAATCTTCCTCTATATCTTC 3881 30 100.0 35 .............................. TTTCACTACACAATCTTTCATATCTTTCGGTAGAT 3816 30 100.0 36 .............................. ACTAGGTTATTGTGACGGTGCATTAGGACTACCTAC 3750 30 100.0 36 .............................. ACTCATTCCTTCGGCTAAAGAACGTTGACCTTCTTT 3684 30 100.0 35 .............................. TTACTTCTTCTGCTATTAACTTATATACATAATAT 3619 30 100.0 35 .............................. AATGCTTCGGATGTTCGGAGTGTGGAGATAGCATT 3554 30 100.0 34 .............................. GTTATTGTATATAAGACGGTATATTGAGTATATA 3490 30 100.0 35 .............................. GAAAACAGGCATAATAAACTTTACTGTAAAAAAAT 3425 30 100.0 36 .............................. AGCACAATTGATGTCCAAAGGTGAGTTTGAAAGTTT 3359 30 100.0 36 .............................. CTGTTAAAGTGGTCAATGGCTACATAATTTCCTAAT 3293 30 100.0 36 .............................. ATACTTCTTAAAGCCATCAGTGAATTAGGTGCAATA 3227 30 100.0 36 .............................. ACAGTTATTGAAGGTCTTCCTATATTTTTCCCACTC 3161 30 100.0 36 .............................. TTCCATTGAGTAGGTTTACCGCACATAATACATTTT 3095 30 100.0 34 .............................. GCATTATCTCTAAATGAAGCGTCCTTAGACACCA 3031 30 100.0 36 .............................. ATTAGAAGATCTATTAAATCTTAAAAGATATAACAG 2965 30 100.0 35 .............................. AGGAATCGTGATGATATGATGTTGTCATAACTTCC 2900 30 100.0 35 .............................. GGGTTTTATAAGTAAGATTATTCGTTATTTTAAGA 2835 30 100.0 36 .............................. CAAGTGGTCAATATGCTTTAGAATTTGCTAGAGATT 2769 30 100.0 35 .............................. CCATCTCCCATATTTATATTAAATACCATTCCATC 2704 30 100.0 35 .............................. GCAATAAATCTGATATAGAGTATATGGATACCAAG 2639 30 100.0 34 .............................. TTTTGAATGATTTTTACAATTAATGAATACAACA 2575 30 100.0 35 .............................. GCAATTTTTTCTGTTATATTTTTACCCTTTGTATA 2510 30 100.0 37 .............................. TTTCTATAGTTTTTTCGTGTGTAGCCCCTAAAGTATT 2443 30 100.0 35 .............................. TATTTAAGAAAATTTTTCGTCAAATTCCTTTATAT 2378 30 100.0 36 .............................. GTACTTAGTTGTGGTAAAGATAATAAGTATAAACAT 2312 30 100.0 35 .............................. AATAAGAGGTCAAGGAAATGATTGTAGAATTTACC 2247 30 100.0 36 .............................. TCAAATACTGTACTTAATCCTGTTTTTTCTATAATT 2181 30 100.0 35 .............................. GAAAAAAAGAGGTTAGATAAAAATTATCCACCTCT 2116 30 100.0 35 .............................. TCTGATAAATTAGAGTTGTATAAAGGACTGTTTTC 2051 30 100.0 35 .............................. TTTGATGCCCTATCCCAATAAAGTCTTGCTTCTTC 1986 30 100.0 34 .............................. GTATATTCTTTTGTATTGTCTTTAACTACAACTA 1922 30 100.0 35 .............................. ATTCCTAAAAACCACAAAGAAACTTTACAGGGTGC 1857 30 100.0 35 .............................. AAAATGTCGTTAAAGGAAGTCATGGCCTGGTCTTC 1792 30 100.0 36 .............................. CAAAGCCCTAGACTTTTACACTCTGTCGCAGTCAAA 1726 30 100.0 35 .............................. TTTCTACTATATCTCCTAATTCATCTTTAGATATT 1661 30 100.0 34 .............................. CTGGTGAAAACTTTATTGTTAAATCTTTAATTCC 1597 30 100.0 36 .............................. GGCAAGTAATAAACATTTGATGCATTTTTTTTTACT 1531 30 100.0 35 .............................. CTTGCGTTGTTGTATCTATATCTGCAATAGTCTAA 1466 30 100.0 36 .............................. GTTAACTGCAATGAATAATGGGAATATAGTTAGTTA 1400 30 100.0 35 .............................. ATTATATAAGCAATCTAAGAAGGGGGAGGATTAAT 1335 30 100.0 36 .............................. TATAATAAAATTATAAATAATGCAGCATCTGTAGAA 1269 30 100.0 37 .............................. TTTTATCATAGTATTTCTTAAAATTTTTCGGTAAATC 1202 30 100.0 35 .............................. AAATGAAACGGAAGATATAGTGTTAGGTTATGAAA 1137 30 100.0 36 .............................. TTTTCTACTTTCTTTTTAAACTTAATAAACCTTTTC 1071 30 100.0 36 .............................. TGTAAAGGGCAATACCACCAGCAACTAAAGCCATTA 1005 30 100.0 34 .............................. GCCTTGGCAAAATACATACAGATAGAAGAAATAA 941 30 100.0 36 .............................. TCTATTAAAAAACGGACATCTTCCATGGGATAACGG 875 30 100.0 45 .............................. GAAATGTACGGGGTAGCAGAAGGGACTATTAGAAGTGCTATGAAA 800 30 100.0 35 .............................. TTTTTTTGAGCCTGATAATATTGCGCTGGAAGTCC 735 30 100.0 35 .............................. CTTATAGTTTCTCTGTCAATTGTTGTGAATTTTCC 670 30 100.0 36 .............................. ATGTTAGGAGCATACACCTTAAATTTTTCTTGGAAA 604 30 100.0 36 .............................. GTATCATGGTTTAAAAGTTCTAACAATGCAGTTTTA 538 30 100.0 36 .............................. ATTCGGAGAGATGCTAGAGAAAGTAACAGGATTAAA 472 30 100.0 37 .............................. AGAAAATTATATTCTTATGTATAGATATAATACAAGT 405 30 100.0 35 .............................. TGATTTAAAGTATCACAATTGCCATGATACTTGAC 340 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 61 30 100.0 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTATTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTTAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATGAAAGTTGGTTGGGAAAAAACTAACGAAAGTATTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : TCTTATTGTATAAAGAAAACCACCTGCTATGCAGGTGTGTTCAGAAAAGCTTTTAGCGATGAGTATGACAAAAAAGACCTCCTTTTGATACAATAGAAAAGGTTTCGTCAGCCAATCTAAAGAACAAAAGGAGGTCATCCGAATGGATAGTAATAGTTTATCACATACAAAATGGAATTGTAAATATCATATAGTGTTTGCACCTAAGTTTAGAAGAAGAGAAATATATGGAGATAGGAAAATAGAGATAGGAAAAATATTAAGGCAATTATGTGAGTGGAAAGGTGTAGAAATAATAGANGCCAATGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 21011-19851 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000469.1 Clostridium haemolyticum strain KFSHRC_CH1 c9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 21010 29 100.0 37 ............................. TAGATTCATTGTATTTTTTCATTCCTGTGTCACTTGT 20944 29 100.0 39 ............................. CCATTAGTGATATTGCCCTATTACGAATTGTGTAACAAG 20876 29 100.0 37 ............................. GCTTGATAATATAAGTCATAAAGCTTATTGTAACTAA 20810 29 100.0 36 ............................. ATCTCATATTCAACTCTAGCTAAGTTTATTGGTTCT 20745 29 100.0 37 ............................. TTTAATCTTCATCTATTAAATCATCCAAGACGTCTGT 20679 29 100.0 38 ............................. TCTAAAAAACAATACAGTAAATGCAATAGCAACAATAA 20612 29 100.0 36 ............................. CAGGCACCAACGGAGCCTACTAAAGTGGTTGAAAAT 20547 29 100.0 38 ............................. AGTTGACACCATTTTTTTTGATAAAGAATGGGATATTT 20480 29 100.0 37 ............................. AATACACATTGGACATAATCTATCTTTACAAAAATTC 20414 29 100.0 38 ............................. ATCTTCTAATTCTCTAAGCAGCTGTTCATTTTCATTAA 20347 29 100.0 41 ............................. CTGAGAACTCATGTATTATTAGATGAGATATTTTAAGCACC 20277 29 100.0 37 ............................. TTGTGGTCCCAAATCTAACATAGATTTTGTTACAGGA 20211 29 100.0 38 ............................. GCTAATGTAAATTTAACTATAAATATAAATGGTACTAA 20144 29 100.0 36 ............................. ATTACTATGAACTCTGGAGAAGAATTAGAAATAGAA 20079 29 100.0 38 ............................. TATTGAATGTTCTTTAAAATTTCTAATAAGGTTTTATT 20012 29 100.0 37 ............................. AATGTATTAGATAATTTACCTTCACCTTTTTCAAATC 19946 29 96.6 38 ..............G.............. TGTAGTAACTTTGTAATAATGTTTCAAAGTATTCTATA 19879 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ========================================= ================== 18 29 99.6 38 GTTTTAGTTTAACTATGTGAAATGTAAAT # Left flank : CCCCGGGGGAAAATTTTTTTCCCCGGGGGGAAAATTTTTTTGGGGGCCCCCTTTTTTCCCCCAAAAAGGGGGGAAAACCCCGGGGGTTTTTTTAAAACCCCCGGGGGGTTTTTTAAAAGGGGGGCCCCTTTTTTTGGGGGTTTTTTTAAAAACCCCCAAAATTNGCTTCTTTATG # Right flank : GAGCATAGCAATAAATTTTGTTTCATTTTGTTTGAGTAAGTTTTAGTAAAATACTATGAAGTGAAGGGATACGTATTATGAAATTTATCGAATCAATAGATCCTTTTTTGATGCAGTTGGTTATTGTTCCGCTAATAGTAATTGGATTAGGTGTTTTAGTAGCTTATAATATTAAAAATATATTAATTGGACCTTTAATAACATTGTTTTTAAATAGTTTATATGAAATTTGGTATATAAAACACTATTGTCCTGGATCAGAAATTAGTTTGAGTTCTTGGAATATTATTCTTCCAATGATTTCATTTACAATTTCTTTGATTGTAGTATTAATTAGAGAATAGGGTAATATTTAATAAAGATTATTTCTTAGGCTAGGTGAAATGTAAATAACCTGGATTTTCTTTAGTTGTAATAATATCAATACTAGGTTTTAGTTTAACTATGTGAAATAGAGAAGCAGAATATAAAAGCTGAAACTACAAACCATCCATCATGGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTAACTATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 172-657 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000629.1 Clostridium haemolyticum strain KFSHRC_CH1 rep_c548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 172 25 100.0 43 ......................... TCCGGCTTTTAACTGTTTATTTATTTTTATAAATTCTCGTTGA 240 25 92.0 42 .CA...................... TGTCCATGTTTAGAACATTTGTATTGTATATCTTTAGGTTGT 307 25 100.0 41 ......................... TATAGGCAATCCTATAACAACCTTACATTCAATATTAGTTG 373 25 96.0 41 ......................T.. ATATATCTGTAGCCATTGCTACTATTGCTGCTGATAAGTTG 439 25 92.0 37 .......................NT TTTTTGGTCTTTGAGGTTTGTACAATGTCTTAGGTTG TA [457] 503 25 100.0 40 ......................... TGTTTCTATATCGGTACAATCTTCCTCTATATCTTCGTTG 568 25 100.0 41 ......................... TTTTTCACTACACAATCTTTCATATCTTTCGGTAGATGTTG 634 24 96.0 0 ...-..................... | ========== ====== ====== ====== ========================= =========================================== ================== 8 25 97.0 41 AACATTAACATAAGATGTATTTAAA # Left flank : CCCCTTTTTCCCCCAAAAGGGGGAAAACCCCGGGGTTTTTTAAAACCCCCGGGGTTTTTTAAAAGGGGCCCCTTTTTTGGGGGTTTTTAAAACCCCAAAATTTTTTCCCCCGGGGGAAAATTTTTCCCCCGGGGGAAAATTTTTTGGGGGCCCCCTTTTTTACTATGGTTGA # Right flank : TACGGGGGTTTTAAAAAAACCCCCGGGGTTTTCCCCCTTTNGGGGAAAAAAGGGGCCCCCAAAAAATTTTCCCCGGGGAAAAAATTTCCCCGGGGAAAAAATTTTGGGGNTTTAAAAAACCCCCAAAAAAGGGGGGGGCCCCTTTTAAAAAACCCCGGGGTTTTAAAAAACCCCGGGGTTTCCCCCTTTGGGGGAAAAAGGGGGCCCCAAAAAATTTTCCCCGGGGAAAAAATTTTCCCCGGGGGAAAAAATTTNGGGGTTTAAAAAACCCCAAAAAAGGGGCCCCTTTTAAAAACCCCGGGGGTTTAAAAAACCCCGGGTTTCCCCTTTGGGGAAAAAGGGGCCCCAAAAATTTCCCCGGGGAAAAATTTCCCCGGGGAAAAATTTGGGGTTTAAAAACCCCAAAAAGGGGCCCCTTTAAAAACCCCGGGGTTTAAAAACCCCGGGGTTTCCCCTTTGGGGAAAAAGGGGCCCCAAAAATTTCCCCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACATTAACATAAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:84.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 329-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000690.1 Clostridium haemolyticum strain KFSHRC_CH1 rep_c630, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 328 29 100.0 37 ............................. TAAATTATTATCTACGTTATTTACATTATTAGAAACA 262 29 100.0 36 ............................. CTAGGTTTTTTATGTCTAGTAATCCTAAAAAACAAG 197 29 100.0 36 ............................. ACTCTTGTGATGACTTGAGCGACTTTGAACGTCCAT 132 29 100.0 36 ............................. AAACCAACTAAAAAAGCTACTGTAGATCTTAAAAAA 67 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 100.0 36 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGACGTTT # Right flank : TCCATGTTCAAGTAAAGGGGTACTAGGACAGGTATTAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 331-2793 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000074.1 Clostridium haemolyticum strain KFSHRC_CH1 c165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 331 29 100.0 38 ............................. CAAATGAAACAAAGAACAACATACGAGTCAAAGGGTTT 398 29 100.0 39 ............................. ATGATACAGAAAATAACATCAAGGCTGGAACTCGACTCA 466 29 100.0 36 ............................. GCTATAAAGAAAAATTATAAAGAATGTTTTATTTTT 531 29 100.0 35 ............................. ACAATTTGCGTACATGTAGAAGCATTGCTAAATAA 595 29 100.0 36 ............................. ATCTTCATCGATAACAGAGAAAGTGTTAATGACCTT 660 29 100.0 36 ............................. CTAATATAAATACAGTTAAATTATTTCTTGTTGTAT 725 29 100.0 36 ............................. ATATTTATTTAATTATGGTTGACTTTACTTTTTTGA 790 29 100.0 36 ............................. ACTCCGCCCTTATATGGTCCTTGGCCTTCCAGTTAT 855 29 100.0 36 ............................. GCAGTAAAACATGTCATTTTTGACACAAAACTAAAC 920 29 100.0 37 ............................. AACGGCTACTTTTTTATGATAAGTTGCTACATATTCC 986 29 100.0 37 ............................. CTATACTATTTACTTTAAAATATTTGATCCTAAAGTT 1052 29 100.0 37 ............................. TTAGATCTACATTTTCGCCTTTATGACAATGTACAGC 1118 29 100.0 37 ............................. TTTAATGTATTTTTTCTTTAATATCCTCAACATCTTT 1184 29 100.0 37 ............................. TAATTCCTTATTTTTAACTTCTTCCTTGGAATCCATT 1250 29 100.0 37 ............................. GCTTGCACTATAACTTGCATTTTACTAGTTTCTTTAA 1316 29 100.0 39 ............................. ATACTACCTAAAGGTATTGAGGGAATCTTGGAGGTGCTG 1384 29 100.0 36 ............................. ATCTGGAGCAATAGAGCCCAAAATCCCCAGCAAACT 1449 29 100.0 37 ............................. CACCTTTGATTGATTGTTTAAATTGCTTTCGTTCTGT 1515 29 100.0 37 ............................. AAGATGGCTGAAGGCAATATTTTAAGCAGCAAGGGTA 1581 29 100.0 38 ............................. TTTAAAATTAACTTTAGTAAAAGTGGAGTGGGCTACAG 1648 29 100.0 36 ............................. TGGAATATTAGGATCATATTCTAGGTGGTTTGCTGC 1713 29 100.0 36 ............................. GTTTAAAATTATTCTGCATACACTTTACTAGAAGTT 1778 29 100.0 37 ............................. TGTTGTAAAAACATGATAAGTGAATTTAAAAATTATA 1844 29 100.0 36 ............................. ACAGTTGCTACAAAAGTAGATCTACTCCAAAACTTT 1909 29 100.0 35 ............................. AGTAATATTAAATTATCCTCCTTGAGCTTATCTAC 1973 29 100.0 37 ............................. ACATAGGACAAACTGTTTTTGGGATTTATTGCTTAAT 2039 29 100.0 36 ............................. TTCGGAAAAGTTTCATTGTAAAATTTCGTAAACATT 2104 29 100.0 37 ............................. AAAAATATACCGAATCCAAATATAATAAAATACAACA 2170 29 100.0 37 ............................. ATTGCTGCTACTACTCCAGCAATTTTAACTATTAATT 2236 29 100.0 39 ............................. AAAATATTAGATGTTGAACTTGTATCTGTTGTACTTCTT 2304 29 100.0 36 ............................. TAAAGCTTTAATTCCAAAAAGATTGTTATAATTTTT 2369 29 100.0 38 ............................. CTGTTAAAATAAGTGAATCTACTAAAAAAGCAGTAGGA 2436 29 100.0 38 ............................. CCTAAAATTGCATTAGGATATATTGCTAAAAAATCAAC 2503 29 100.0 36 ............................. TTTGAGGTTCATCTATTATTCTAAATCCTTCATCAA 2568 29 100.0 36 ............................. GATAAATATAAATTTGTAAAAGTTGAGGTCTTAAGT 2633 29 100.0 37 ............................. ATCTTACTTAGCCCACAAGACATAAAAAGTAGTAAAA 2699 29 100.0 37 ............................. AACGCAATTAATCTTCTACTTTTTAAAGCACTATTTA 2765 29 82.8 0 .......................T.GGGA | ========== ====== ====== ====== ============================= ======================================= ================== 38 29 99.5 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : CCGATAAATAAAGAAGACTCTAAGTTATTCTTCCAACTCATTGACATGCGATATGAGAAAAAAAGTACAATTTTAACAACCAATATAAATTTCAATGCTTGGGATGATATTTTTTATGATCCTGTTATTGCAAATGCCATATTAGATAGAGTTTTGCACCATGCTCATGTTGTACCTATTAATGGAAAGTCTTATCGCTTAAAAGATCACTTTAAAGATGACGATGAGTAAAAAACTACACCCTTAAATGATCAGAAAATTTCATTATTATCTTGACGTTTATATGATGTAAATTAGTAACAGCGGATTAATAGAAGGAAGGGACTTCACG # Right flank : AGTAATATTAGCATACGGTGACTTATCACCATAGACATAATTATTGGTAATGTATTATATATAAAATTTTTCATACACTTTCACCTCCAAACTGTATTTTAATTATAATTTATCTTCTCAAAAAAATATATATTTAGAATAATTTATATTTATATAAGAGTAGGTTACACTGCATTAAACTATCAGTATATATTGAATAGAAAATAGATAGTAATATTAATATATCATCCCCTTTTAATTTATTTTACAATATATATCATATATAGGATTTTCAAAATAAAAAAGTATATACTAATGCAACAAAATAAGATGATTAGAATATATTAATTAATAAATAATACTAAAACAAGAAGGATAAATATAATAAATGTAGAATATATTATATAAAAGGGTGGTGATATCATGATCGATGATTTAATTAAAAGAGGTAGATCATATAAAAACAAATTTACAAGAGAATACAATTTAGGAGCAGAGCATGGCATAGATTCAAACTTAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 390-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZB01000759.1 Clostridium haemolyticum strain KFSHRC_CH1 rep_c789, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 389 30 100.0 35 .............................. TCTATTAAAAACGGACATCTTCCATGGGATAACGG 324 30 100.0 45 .............................. GAAATGTACGGGGTAGCAGAAGGGACTATTAGAAGTGCTATGAAA 249 30 100.0 35 .............................. TTTTTTTGAGCCTGATAATATTGCGCTGGAAGTCC 184 30 100.0 35 .............................. CTTATAGTTTCTCTGTCAATTGTTGTGAATTTTCC 119 30 100.0 36 .............................. ATGTTAGGAGCATACACCTTAAATTTTTCTTGGAAA 53 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 6 30 100.0 37 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AATGCCTTGGCAAAATACATACAGATAGAAGAAATA # Right flank : TGTATCATGGTTTAAAAGTTCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //