Array 1 10237-11115 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYF01000029.1 Nitrosomonas eutropha strain Nm56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 10237 36 100.0 34 .................................... ATGCTGTTCTCTTCCAGATAGATACGGCTATATA 10307 36 100.0 34 .................................... TTCCCTGCTTCTCAAGCTTCTCTTGCTTGTTTAA 10377 36 100.0 34 .................................... AAAGCCCGTTTGCTTCTTTTTCTTTATTGATGCA 10447 36 100.0 36 .................................... CGCTGTCTTAAACAGCGTATTAATATAACTACTATA 10519 36 100.0 34 .................................... GAACGTTTGTATCATTTGGTATTGGGTCGAGTGA 10589 36 100.0 33 .................................... CGCGTCAGTCCATGTATACCCGCAGCCCGGAAC 10658 36 100.0 35 .................................... GCTAGAAAGTCTACCTGTTACAGCCACACATTGAT 10729 36 100.0 33 .................................... TTGTTTTGAGCCGGGTATATCGTGTACATAATT 10798 36 100.0 35 .................................... GAAATGAGATAAGTCTTTGGCTTGCTCGGATATTT 10869 36 100.0 35 .................................... CCCTTTCCGCCAAATGAAATAAACCACTATCTTCT 10940 36 100.0 36 .................................... TATGTGTTTGTTGATGGTCGTGACCGACCAATTTAA 11012 36 100.0 32 .................................... GCGTTACATCCATCAACGTGAGCATTTCATCG 11080 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ==================================== ================== 13 36 99.8 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : ACCCGCGACGGCTGGCGCGCTTGCATCGCTATCTGGTAAAACGTGCCGTACCGTTGCAATATTCTGTATTTTTGTTTAGCGGAGATGATCGCCAGCTTGAACACTGCATGCAGGGGGCGATCGAACTGATTGATGAAAAAGTGGATGATTTGCGTGTTTATCCGTTGCCGAGTCGTGGGCTGAAGGCTCGCATCGGTCAACCCGCCTTGCCAGAAGGCATCCAATGGAGTGGATTGCCCACTGCGTGGTAGCGTACAGCTTTTCTGAAGCGATCAATCGTCTGAAAAGAAAGCCAGATCAGTTACAGTTCGCTCTTGTAAACATGGCGGGATCGTTCAAAATATCAGAAAATAAACCAACCTCAGATATTTAAACTTTACCGATTATTGTATTAATGGAACAAATAACCAACTGACAGGAGACATCTTGCAGCTTCTTACCATTTTTCCTCTACACCCTTTTCAAGGTATTGATTGTAAAGAGAAAAATGACAGTAGTCA # Right flank : TTGGCATACAAGCCGGTATTTGTTTTCCTCGTCATCACGAAGCCGTCAGGCTATGGTGATCCACTACCACCGCTACCACTTCACTGGATTGCTTCACTCCTTGGGTGTGTGCAAAAGCAAGGGCAGTGAACTGGGTTGCTACGTCAGCCTGGCCACTACCTGCTTTCCGCTGCATTATGCTTGTGGGCGCAGTCGCAGTTAAAGGCTGGTTTGCTCACAATGGCACGTCAGCTCACCAAGACAAGACGCTGTATGCTTGGCTTCGCACGGTTCATTCCCCATACCCCCCCTGCACAACTGTAAAATTACAGAATTACGCAGAAGTCTTTTTGTAAAAAAGACTGTTATCTTGGACAAGGAGTTTTCGTAATGGATAAAGCAATATATAAAGAAAGGTTTCCGGATTTCTTTGCTGATGCGCCGGCTGTAACCCTACGCGATCCGCTGGCACAGTTTCTCGGCACAGCACGTGACGGGATCATGGAATACCGGTATGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 11589-10987 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYF01000037.1 Nitrosomonas eutropha strain Nm56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 11588 36 100.0 33 .................................... AATTCTTTTGTGTTCATTTTTTATTCCTCCAAT 11519 36 100.0 35 .................................... TACCATTTATCTGCATAGTTATTATTCCTAGAAGT 11448 36 100.0 35 .................................... ACAAGAAAAAAGAAGTGTTCAACATTAGAGATATT 11377 36 100.0 35 .................................... ATTGTAGACATTCAACAATTGATGACCACGGCACA 11306 36 100.0 36 .................................... GTTCCAAAAATCTCCTTTCTTTTCCATCTCCATAAC 11234 36 100.0 35 .................................... GTTCACATCCAAACACTAATGCATTTGGATGAGAC 11163 36 100.0 34 .................................... CGGATAGACTTCGACGAGCAAACACCTTTCCATT 11093 36 100.0 35 .................................... CTAAGGTGATTTCCTCACCCATATCATCTTCCATA 11022 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== ==================================== ================== 9 36 99.7 35 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : TTGGTTACATACGCCATATCCTTCGCTGCTTTTTCAGTAATCTGATTAACGCGACAAGTTGGTGCCAGCTCGAACATATAAAAATTACTCCGGTAAGCAGAACGGAGTGCATTGTGTATTAGCTGCTGGCCGACAAGCTGACGGCAAGCTTGCCGGTCAGAGTACGTGTTGCCTTGATCAGAATGGAGATATACGATTTCATTTCGGTCGAAGACCGGTCACGCGAATATGGATGAAAAATGGCAATACTTTTACAAACTGAAAGGACAGAAAAAGCAGTAATATCTGCCTGTTCCCTTGGAAATTGCTGGTTGTTGGTGGCTGAAAACACTGCAGATGACAGATTGTGGCCCAGGGAAAAATAGCCACCAGCTGCCTGGTAAAATGAAGCGTTTTTGAAAGAAATTATTGTTTGGAGGAGACATCTTGCTGCATCCCGCTATTTTTCCTCTTTGCCCCGTGCAGTGGATTGATTATAAAGAGAAAAATGACAGCAATCA # Right flank : GAGTTGGTATGTAATTTCCCTGCCATCACGAGGGACGCAGTGATGTGGTAATCCAGTGTTGTCGTTACCACTTCGCTGGATTGCTTCACCCCTTGGATGTTCGCAAAGACGGCAAAGTCAGCTCACAAGCAGCGGCTCCTTAATGGCGCACCTTGCTTGTATAGCATGCCTGCACCAGCCTGGTGCGTCCGGCACCCCAGCCACTGATGGCTGCTCCCAGACACAGAGCGGTAAATAACCAGCCGCTGGCGGCATACCCGCCAGTGAGACTGTGCAGCATGCCAATCAGCAAGGGGCCCAGTGCCGCCAGCGTATAACCAACACTCTGCGCCATACTGGATAAGTGTGTTGCGATGTGAGCGTCGGGAGAACGCAGGACGATTATGGTCAGTGCGAGTGCAAACAAGCCACCCTGCCCGATTCCTTGCAAAATGCCGAATTCCCAGACTAATTCAATTGGGCCGAACAACATTCCCAGAAAGCCGATTGCAGCAGTGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 48105-50370 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNYF01000018.1 Nitrosomonas eutropha strain Nm56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 48105 37 100.0 34 ..................................... AGAAAGGTATGCCGATATAGACAAAAGATATCAT C [48141] 48177 37 100.0 35 ..................................... AAGGGGTTACTCCATGAGGTCATTACCATGATAAG 48249 37 100.0 35 ..................................... CAAGTGCTGTATTACCGTAAGGAGTACTGGATAAC 48321 37 100.0 34 ..................................... AGGATGATATGCGGTTTACTCTGGTAATTCCTAC 48392 37 100.0 34 ..................................... CGGCTTTCACCGGGCATCACTGGCTCTCCCGAAT 48463 37 100.0 37 ..................................... CCCGAATGCTGATAGATTGATGACCGGTATAGGTAAG 48537 37 100.0 35 ..................................... TTGTGTGTAAGTGAGAAGGTAGTCTTTCAACGACC 48609 37 100.0 34 ..................................... ATTTTATCTCCATCATGGTGAAGCTTATCAGACC 48680 37 100.0 36 ..................................... ATAAACCGTGAACCAGTTAGGTTCTCCATCTTCCAT 48753 37 100.0 33 ..................................... AGTTCTTGATATGCCTCCACAGAACCATGCAAA C [48789] 48824 37 100.0 36 ..................................... GGATGCGAGATTCAAGCAAGTCAATGATGCGCTCAG 48897 37 100.0 34 ..................................... CCGGACTTGTTAGGGTGCAGATTTAATGCATCAT 48968 37 100.0 35 ..................................... TTCAATGGGTCATCTGTTGCCTTAACCGGAGACAA 49040 37 100.0 35 ..................................... GTACCAGACATTAAGCCTTACAAATCGACCATCAC 49112 37 100.0 34 ..................................... AACCCAACCAACACTGTTGGCGGCATAAATCGAG 49183 37 100.0 35 ..................................... ACCAATCCAGACCAGGATTCATCTGTCGCTAACTG 49255 37 100.0 35 ..................................... CTCGTATTTTGCTGCGTATTTTTGCGCCTGCGCTG 49327 37 100.0 35 ..................................... AGAAGGCCCAGGTTGAGCGATTTATACCGCCAACA C [49362] 49400 37 100.0 35 ..................................... CCTTGATTAATCTTCTTGAGCAAGGTGGATGTAAT 49472 37 100.0 34 ..................................... AGAAGGCCCAAGTAGACCGGTTGATCCCGCCCAC C [49508] 49544 37 100.0 35 ..................................... AGAAAGATCCGATCTGCTATCAAGCTTTACTAGCT 49616 37 100.0 35 ..................................... AGGCGGGGGACGAATATAAAATGCCATCCGATAAA 49688 37 100.0 34 ..................................... AGACAAATTAGGCGATGCCATAATCTTACCCTTT 49759 37 100.0 34 ..................................... TGGTCATCCTGCTTTGCAAGAATTTGGCATGCAG 49830 37 100.0 34 ..................................... TAATCCATGACGTGCCATTATACGCCATAGGCTC 49901 37 100.0 35 ..................................... AAGCTGCTCGCGACGATAGGCTGTCTGCCAGAGAG 49973 37 100.0 35 ..................................... TCCAGAAGAGTTGGCAGAAGAAGCATCCACCTACC 50045 37 100.0 35 ..................................... GCCGATTTCCGCAAAATACTGAGTTGTACTGCCGT 50117 37 100.0 34 ..................................... AGACAAATTAGGCGATGCCATAATCTTACCCTTT 50188 37 100.0 35 ..................................... AGGATTGATCCATCAATCCCAGTTGTGACCAAGCT 50260 37 100.0 36 ..................................... GAAAGACCGGCATCAGGGTACATAAGAGATGTAGTG 50333 36 75.7 0 ..................T.CC...A.T.-.AA...T | T,A [50350,50354] ========== ====== ====== ====== ===================================== ===================================== ================== 32 37 99.2 35 GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Left flank : GGTTATCTCCCTTTCCTGACCAGATAGTGATGCTGATTATTGTTACCTACGACGTTTCAACAGAAACCAAAGCTGGCCGCAAACGATTGCGACGAATCGCAAAAGTTTGCGAAAGCATCGGGCAGCGTGTGCAAAAATCCGTATTTGAATGCCGTATTGATTTGATGCAATATGAAGAACTGGAACGCCGCCTGCTGGCAGAAATAGACGAGCAGGAAGATAATCTGCGACTGTATCGGTTAACCGAACCAATTAAACTCCACGTAAAAGAATATGGAAATTTCAAGGCAGTTGATTTTGAAGGGCCACTCACCATCTGATACGCGCGAACCTGTAGCATCGGCCAAATACCGATCGGTTCGCGCCACATCTAACTACATGATACAGAATAGAAAAATAATTTACCCCTCCTTTTATCTGTTACATGCAGTCAAGGAAAATCTCATGTTCGCGCAAACTGCTCGAATTTTGATGATGTATCAAGAAGTTGTAACTGTACT # Right flank : TGCCCCTTAACGGCAATTAAAAATTGCCCCCCCTGAATTAAGCTGGTCATTTTTTCTATGAGGTGGCTGCTATTATTGTTAATACAGGAGATGGCAATGACCATTAGGGTATTAAAGAAGCAGGGAAAGAGGATTAAAGAAAACTGTATATCATGCGGGCACCTCGAATAACCCGAGGGTTTCAGTCAATCCTGCCGCGAAATGATGAGCGCGACCGAATTCGGTTTGATTTCCATGACAAATCGCCGCTTTCCTGGCGATGTCGCGCCGCTTTTACCCCGAATCTCCCTGGGCATTAGCGATTCGGTCCATTTTGAGTGTCAAGAGGCCTTGATCCCTGTCTCTCCAAAGTAGACCAGTCGCCTCAGGTTGTAGCAGGCCGCCATCACCGAGCTAAGAGTCTGTTCAAAGTCTTTTGAGTAGAACGGCCAGGAAGGCCAGGTGAATAAACTGCAAGCTGGTGTTGAGTAAGCGCTCACAGTTCTTCCACAGCCGTCGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.40,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : NA //