Array 1 12685-11021 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031359.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 12684 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 12623 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 12562 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 12501 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 12434 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 12373 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 12312 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 12251 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 12190 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 12129 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 12068 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 12007 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 11946 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 11885 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 11824 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 11763 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 11702 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 11641 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 11580 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 11477 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 11416 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 11355 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 11294 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 11233 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 11172 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 11111 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 11050 29 96.6 0 A............................ | A [11023] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30069-28943 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031359.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30068 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 30007 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 29946 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 29885 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 29824 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 29763 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 29702 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 29641 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 29580 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 29519 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 29458 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 29397 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 29336 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 29275 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 29214 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 29153 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 29092 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 29031 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 28970 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //