Array 1 950-2475 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCZP01000436.1 Pseudomonas aeruginosa strain 55 scaffold_435, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 950 28 100.0 32 ............................ AAGGCGTGGAACGCGCAGCCGGGCAATTCAGT 1010 28 100.0 32 ............................ TGGTCGAACGCCTCGTCCAGTTCCTCACTGCT 1070 28 100.0 33 ............................ AGTAGTCGCCGCCAGGCGGGATTGCTCCAGGAT 1131 28 100.0 32 ............................ ATCTGGTCGGGGTCCTGAACGGCGTGCAGGTA 1191 28 100.0 32 ............................ TCGACGGTAGCCCATCGCCGGACTGGTTGCCG 1251 28 100.0 32 ............................ ATGAATTCCTAGTTTCCGAGTATTTGCTTGAC 1311 28 100.0 32 ............................ AGGTGCCAAAGCCGCTGGTGGGGATCGTTGCC 1371 28 100.0 32 ............................ GAGTCGCTCGGCTGGGTCACCGACCGCGCCTC 1431 28 100.0 32 ............................ TGTTAGAGATCAATCGATAATGAGTGTTGACC 1491 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 1551 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 1611 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 1671 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 1731 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 1792 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 1852 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 1912 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 1968 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 2028 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 2088 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 2148 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 2208 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 2268 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 2328 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 2388 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 2448 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1684-95 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCZP01000602.1 Pseudomonas aeruginosa strain 55 scaffold_601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1683 28 100.0 32 ............................ TGCCAGGCGCTGGCAAGACCCTGAACGCGATT 1623 28 100.0 32 ............................ AGCACGTCGGGAGTCGAGCAACGGCGATCGCT 1563 28 100.0 32 ............................ GGCACGCTGTGCTGAGCCTGGGCGCTATCCCC 1503 28 100.0 32 ............................ TACGCGAGCGCGCGCAGATGGCCTGGGAAGGC 1443 28 100.0 32 ............................ AGTACGGGCTGAAGGATCGCGCCGAGCGTGGC 1383 28 100.0 32 ............................ AACTGCGCTTGGCTAGCACGGGTTTTCTGCCA 1323 28 100.0 32 ............................ ACCACGCTCAGTGTCGCTGAGTTCGGCGACTA 1263 28 100.0 32 ............................ TTGCGGAGTAAATCGACTGGTGCGCGCTTCAT 1203 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 1143 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 1083 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 1023 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 963 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 903 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 843 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 783 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 723 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 663 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 603 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 543 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 483 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 423 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 363 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 303 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 243 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 183 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 122 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AAGCTGAACAGACCACTTCCACCGACTCCTGCTCACTCAACTGGTCTATCAGCGCGTACGATCGAGTTCGTCCGACATCAAGAGAGCGGTAGCCTTTTTTAGGATCGCTTTCTCCCGCTCCAACCGGTTGATCCGGGCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTTTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1877-949 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCZP01000712.1 Pseudomonas aeruginosa strain 55 scaffold_711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1876 28 100.0 32 ............................ GCGAAGCTGAGCTTTCGGGGCGGCTTTTGGCT 1816 28 100.0 32 ............................ GTGGCACGACCGTGACCTGGGATGTGCCGACA 1756 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 1696 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 1636 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 1576 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 1516 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 1456 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 1396 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 1336 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 1276 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 1216 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1156 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1096 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 1036 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 976 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //