Array 1 30521-33008 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZX01000032.1 Xanthomonas fragariae strain PD 885 isolate PD 885, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30521 28 100.0 32 ............................ ACACTAGGCCCGTAGTGAGACCGGCGAGGTCG 30581 28 100.0 32 ............................ AACGTCTCTCCTCGTATACTATCGAATGTGTT 30641 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 30701 28 100.0 32 ............................ AGCTTCGAGGAACAAATCTGATCGCTGCAACG 30761 28 100.0 32 ............................ AATCCGACTATCTTTAAGCATAGTCTGTCCGG 30821 28 100.0 32 ............................ TGATGGTTGCGGAAAATAAAGGTCTGATCCTT 30881 28 100.0 32 ............................ TACGGGCATCACGGCGAAAGGCACTCAGCGAA 30941 28 100.0 32 ............................ AAGGAGCAGTGATAAACAATCAGGGTACCGCC 31001 28 100.0 32 ............................ TTGGTCGGCCCAGACAGCATTATTCATCATGA 31061 28 100.0 32 ............................ CAAATTAAGAAGTGGGATACCGGAGTAGTAGA 31121 28 100.0 32 ............................ TACTGTTACTGTGGGTTGGCCCGCACTCCAGT 31181 28 100.0 32 ............................ ATCCGTCCGGAGCACCACCGGAGTAGGTCCCC 31241 28 100.0 32 ............................ CGCACGTGCTGGCGGAGAAAGACTGCTGCAAG 31301 28 100.0 32 ............................ GAGCTGTGTGCACCAAAGTTGCCCTCCTCGGG 31361 28 100.0 32 ............................ GTACGGCAGCACCCGCTTTAGCTGTGCTGAGT 31421 28 100.0 32 ............................ ACGACCGCCTCATGGCTTCCTGCGTGCAGCCC 31481 28 100.0 32 ............................ GACGATCTTCTGGGCAAATACCCGCTGAAACT 31541 28 100.0 32 ............................ TGCGTGCAGCCCTAGCGCGACTAGGCTCAGCA 31601 28 100.0 32 ............................ TGCTATGGCAGAACGGCTCAGAGTTTCGTACT 31661 28 100.0 32 ............................ CAGCGCTACCAAGATGCAAGCTACCGACATGA 31721 28 100.0 32 ............................ AAAACCATTTGTGCCCGTAGAGCTTTCCATCC 31781 28 96.4 32 T........................... TCGACGACGCCGAAGAGGTTCGCCAGTGGTCG 31841 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 31901 28 96.4 32 .....A...................... ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 31961 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 32021 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 32081 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 32141 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 32201 28 100.0 32 ............................ ATTGCATACAAAGACGGCATCATCGCCTCGGA 32261 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 32321 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 32381 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 32441 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 32501 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 32561 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 32621 28 100.0 32 ............................ TGGCTGAAATTTACAAAGGGAGCAGTAACTCG 32681 28 100.0 32 ............................ GTGTCGGGATCTTCCTCAAATCTTGCAGGAGA 32741 28 100.0 32 ............................ TACTGCCACAAGAACCCCGGGATCGAGGATCT 32801 28 100.0 32 ............................ TGATGCACTCGGCATACGCGCCACCGGTGGAC 32861 28 96.4 32 ..........................C. GGGATGTCCGGATGCTGGCAGTGACGCGTTGT 32921 28 100.0 32 ............................ ACATCAAAGGCTGCTACTGAAGCTCTGGATGA 32981 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9169-8962 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZX01000251.1 Xanthomonas fragariae strain PD 885 isolate PD 885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9168 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 9108 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC 9048 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC 8989 28 82.1 0 A..........TC........G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GAGATTCGCCTTAGTCTCGTGGGCTCGGAGATGTGTATAAGATACAGGTCTAGGAAACCCTGGGCGTATCATGTGTAGTAGTTA # Right flank : TGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACGG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //