Array 1 242833-241356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBF010000006.1 Salmonella enterica strain 336 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242832 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242771 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242709 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242648 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242587 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242526 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242465 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242404 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242343 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242282 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242221 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242160 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242099 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242037 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241934 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241873 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241812 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241751 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241690 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241629 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241568 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241507 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241446 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241385 29 96.6 0 A............................ | A [241358] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260580-258965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBF010000006.1 Salmonella enterica strain 336 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260579 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260518 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260457 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260396 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260335 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260274 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260213 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260152 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260091 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260030 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259969 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259908 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259847 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259786 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259725 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259664 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259603 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 259542 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259480 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259419 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259358 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259297 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259236 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259175 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259114 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259053 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258992 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //