Array 1 936248-937495 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016010.1 Salmonella enterica subsp. enterica serovar Newport strain CFSAN001660 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 936248 29 100.0 32 ............................. TTGCGTATTTCGATTGTCTGGACATTTCGTAC 936309 29 100.0 32 ............................. TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT 936370 29 100.0 32 ............................. GCAGAATATGATTTATATAGAACCAATGAACT 936431 29 100.0 32 ............................. CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA 936492 29 100.0 32 ............................. CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG 936553 29 96.6 32 ............................C GTTGCTCAAAAAACTGAACGAGGGTAACTACC 936614 29 100.0 32 ............................. ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA 936675 29 100.0 32 ............................. AATATCCACTTAAACACAACCATTATTCGCTA 936736 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 936797 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 936858 29 100.0 32 ............................. GTCCGTCAGGTTGGATCGGATGGCATTCCGGT 936919 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 936980 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 937041 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 937102 29 100.0 32 ............................. ACGTTTTAACAGGGTAATATTTACTTAATTAT 937163 29 100.0 32 ............................. GTTACTTTATTATCTCTCGCATAGACCCGGCA 937224 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 937285 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 937346 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 937407 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 937468 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTCTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 953743-954687 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016010.1 Salmonella enterica subsp. enterica serovar Newport strain CFSAN001660 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 953743 29 100.0 32 ............................. CCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT 953804 29 100.0 32 ............................. CATCTTTTACGCATGTTGATGTGCGTTCAAAT 953865 29 100.0 32 ............................. AAATCGTCAATAAAATTATTGGCGCGCCATCC 953926 29 100.0 32 ............................. CGTTATAAGGCGGTAACGGCGAAAACATATGA 953987 29 100.0 32 ............................. CGCACGATCTACAGTCCAGCTATTCGGGATGG 954048 29 100.0 32 ............................. ATTTTTGCCTCCAGCGCGAACAGCATGGCGCC 954109 29 100.0 32 ............................. TCCGACTCGCCAACCTGGTCTATGTGCTCTAT 954170 29 100.0 32 ............................. GGGGGTGATAACCGCCTCGCTGAACGCTACGC 954231 29 100.0 32 ............................. AGTGAAAAATTGCGGTTCGTCCTCCTCATCGT 954292 29 100.0 32 ............................. ACTAACGAAAGATTAAACCAGCGCATTGAGTT 954353 29 100.0 32 ............................. CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 954414 29 100.0 32 ............................. GGGATTATGTCCTCTAAAGACTGGCTAATCAC 954475 29 100.0 32 ............................. CGCGCCCTGCGTGATTTTGAAAATCTGGTGGA 954536 29 96.6 32 .........................G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 954597 29 93.1 32 ..C..........T............... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 954658 29 93.1 0 A...........T................ | A [954684] ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //