Array 1 19673-20830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUMO01000098.1 Lacticaseibacillus rhamnosus strain 944_LRHA 338_42551_957208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19673 36 100.0 30 .................................... TCCAGGGCCCGCTCCTGTCCCGTCCCGGCC 19739 36 100.0 30 .................................... TGAGCGTGCTCATGAAGGCCGAGGCCGGCA 19805 36 100.0 30 .................................... TTCTTGTAAATCAGGGTAAACGTCAGAAAG 19871 36 100.0 30 .................................... CACGGCCACTTCATCGCGATCCACGTCATG 19937 36 100.0 30 .................................... TCTGCTTCAATCTCAACACGCGGTTGATCG 20003 36 100.0 30 .................................... CATACACCTTATTACCCTGTGCATTGTCGT 20069 36 100.0 30 .................................... TGTCATCTATTTTGAACGACAATGAAGATG 20135 36 100.0 30 .................................... TAAATTCTTCATATGTGACCATTTTTCCGT 20201 36 100.0 30 .................................... TCGTATACGCGTGAAATATTCGCAATTGAG 20267 36 100.0 30 .................................... TAAATCAGCGTGGGCAAGTTGTTTACACGG 20333 36 100.0 30 .................................... CCACGGGAATAATATCAATGCCTTGATGAA 20399 36 100.0 30 .................................... CACGAAGACTACACGCACGCTGATGACTCA 20465 36 100.0 30 .................................... CATGCCGCAATCATTTGGGTGTCGTCATTG 20531 36 100.0 30 .................................... TTCCACGCCAGTGTCTGATGGTACTGTTGA 20597 36 100.0 30 .................................... TAGCTTGTTTGATAATGAATAGGATCGCGT 20663 36 100.0 30 .................................... AGCAAAATCAAAAAACAACTTGAACTTTTT 20729 36 100.0 30 .................................... GCCGTAACGGTCTGGTCAAATTCACTCACA 20795 36 91.7 0 ..........................A.....A.A. | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAGAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGGTTGAGCTGGCACAGCAACTGGCAATGAGCTTATTAAAAGAGCCGTTGTTAAGCGAACTTCCAGTTACAGTCGAACCCGGTGGAAAACTTGAACAAATTATAAAATACTGTAATGTTCATTTTGATGAGGAAGTAGTCACGGAGCCCTCCTCAAGAATTGAAGCAGCAATTCAGACTTTGGTAAAACTTGAAGAGAAACGGCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGAGGGTATGAGCAGGTTGTTAGATCAGGTTAAGGATACATCGTTGGAATTGCTTCTCATTGAATTTTCAGATGTCGATCGTAGAAAGTTCTTTGAGAAATGCCAGTATATCTATATTGACAAAGATTTTATGGACAGTCGAGAACTGATTGATTAAGGGACCGTGTGAAAACACCG # Right flank : CCTTAACATTGCTAAACTATCCATTATTTGGGTCTCCTATAGTTGTGGAAGAGGAAAGGAAGTAATTGAAATAGAACGACAAAAATTATACAAGCGAGCAATGGACATGTTGTTAGATGGCTATGCTCCGTTAGACGCAGAGACATTAAGAGTTATGAAGGTACGCGAAGTTTATAGTCCTATTAATCGCGTAGACATGACAGCAGAGCAGTTAGGTGTTTGCTTTCCATTAAGACTAGTCAATAGAAAGCAATTGCGTGAGCTTAGAGAATTAATTCCACGTGACTTAACCCCGACAGAGATTTTTCTAAGAACAGCACGGTTGAAGGGTCAGGCAAAGCCATTGCACAACTATGCGCCTGATTCCGATGTCTGGCTTGATGGCATTATCGGTTCTTTATATTTTGGCGGTTCGGATGATGGGCATGATGATTTCTATTGACCAGACGCTGAAACTTGGTCTGGTAGTCCATCCTCTGAGATCGATATACGCCACAACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //