Array 1 1084-1723 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJXN01000270.1 Klebsiella pneumoniae subsp. pneumoniae strain ATH9 NODE_270_length_1756_cov_2.37761, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1084 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 1145 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 1206 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 1267 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 1329 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 1390 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 1451 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 1512 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 1573 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 1634 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 1695 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CCGCAATAACAAAAATAAATGAGGGTTAAAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31-669 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJXN01000319.1 Klebsiella pneumoniae subsp. pneumoniae strain ATH9 NODE_319_length_697_cov_1.24355, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 92 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 153 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 214 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 275 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 336 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 397 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 458 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 519 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 580 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 641 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTTAACTCTATTGCCAATGGCGCAATTCAG # Right flank : GGACCCCGAGCGACCCGGTCACCCTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22740-21372 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJXN01000076.1 Klebsiella pneumoniae subsp. pneumoniae strain ATH9 NODE_76_length_22756_cov_3.1855, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22739 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 22678 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 22617 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 22556 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 22495 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 22434 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 22373 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 22312 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 22251 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 22190 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 22129 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 22068 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 22007 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 21946 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 21885 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 21824 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 21763 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 21702 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 21641 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 21580 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 21519 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 21458 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 21400 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGTGGGTCATCCTTC # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //