Array 1 2749-2598 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHY01000140.1 Streptomyces sp. NRRL F-5123 contig140.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2748 29 100.0 32 ............................. GAGCCCGACGGCGTCTGGGGCGGCACCACACC 2687 29 100.0 32 ............................. TCGAACTCGGCGTTGGCCTTGCGCTCGACACG 2626 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Left flank : CAGCGGCCAGACGCGGCTGGAGCCGAGCAAAGAGATTGCAAAGCCCCTCTAACGCCGCAGGTCAGAAAG # Right flank : ATCAATATGTCAGTACCGGATCCGATACTGACGTCTGTCGGTGTGAGGTCTCAGGACTTCCTTGACGGTCTGTCGTCAGGAGATTCTTGACGGTTCTTCTGAGTGCCCATGCCTTTGACGTAGAGCCTGGTGATCGGTCAACGCCTGGTGGGGGCGCTGGTGGTTGTAGGCGTGCACCCAGCCGTCGACGGCTTCCTGGGCCGCGGTCAGGGACTCGAACGGCACCACGTGATCGAGGAACTCTTCGCGCAGGGTGCGGTGGAAGCGCTCGATCTTGCCGGTGGTGGTGGGCGAACGCGGCTTGGTCAGTCGCTGGGTGATGCCGTTGTCCCGGCAGATCCGCTCGAAGAGCACCTCGACCGGCTGGGGGCGGGTATGCCGCCCGGTGAACTGCTTGCCGTTGTCGGTAAGGACCTCGAAGGGCACTCCGTAGCGGCGCATCGCGGCGGTGAAGGCCGAGCAGACCGCGCGGGCGCTGGGCACGGCCACGACGGAGGCGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2637-1267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHY01000141.1 Streptomyces sp. NRRL F-5123 contig141.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2636 29 100.0 32 ............................. AACCAGACGGACCCCCCGAAGAGGATCATCTG 2575 29 100.0 32 ............................. TTGATCTCTTCGGTGAACTCGGTGGGCTTACG 2514 29 100.0 32 ............................. ACTTCGGGCGACTTCGCGATCAGTGCGACGCC 2453 29 100.0 32 ............................. GAGGCCGAGCGCGGCGTGCATGAGGCCCTGGC 2392 29 100.0 32 ............................. CAGTCGCAGCAGTGGGCCGATGGGGACAGCCT 2331 29 100.0 32 ............................. ATCGCCCGCGAGCTCGCCGCCCAGGCGGACCA 2270 29 100.0 32 ............................. ACGGAGCCGATGATGCTGCCGACGTTGCCGAG 2209 29 100.0 32 ............................. GCGTCGTTGACATCGACGTCCCACTGCTGCTT 2148 29 100.0 32 ............................. ACGAAGTGCCTCGCGAGCAGCATCGTCCCGGG 2087 29 100.0 32 ............................. CTGCGGGAGTCGAGCAGGGCGTCGCCGTTGGC 2026 29 100.0 32 ............................. GTGGCGTTCGCGTCGCCGGAGGTTCAGGCGGG 1965 29 100.0 32 ............................. ATCGAGCAGCCGGTGGGCGTGGAGGTGGGCGA 1904 29 100.0 32 ............................. ACCAGTGCCGCCGACTTTCGTGCGACGTAGAT 1843 29 100.0 32 ............................. AGGCTCCAGTACTGGTACTGGGACCCCGAGAG 1782 29 100.0 32 ............................. CGTCTCGCCGAGCGCTGGCCCGACGCCTACGC 1721 29 100.0 32 ............................. GGGCGCGCACAGGGTGCCGCCGAAGCGCGGAC 1660 29 100.0 32 ............................. GCCCAGGGCTGGTGGATGGTCAGGCACCGGAC 1599 29 100.0 32 ............................. CTCGGCGGTGGCGTACTCGGTGCCGCCAAGGT 1538 29 100.0 32 ............................. CTCAAGGCGGAGGCGGAAGGGATCCTCGCGTG 1477 29 96.6 32 ...........A................. CAGGCCGCGGACGCCGTGCGGGCGCTGCGGGA 1416 29 100.0 32 ............................. ATGCCGGGCGTGGAGACGATGCCGCCGTTGGC 1355 29 96.6 31 ........................C.... CGAGCCCGCGGCCGCCGCCCCGGCCCGACCA 1295 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Left flank : CAGCGGCCAGACGCGGCTGGAGCCGAGCAAAGAGATTGCAAAGCCCCTCTAACGCCGCAGGTCAGAAAG # Right flank : TGTGTTGGTGCCGATCGCGCGGTCGAGCTCGGCGCCACTTGGGGTCCGGCCCTTCGCGTGCTCCTGCTGGAAGTAGGACCACATCGCCTCTTCCGCGCTCTTAGCGTTTCTCGAACGGGCTGTGCTGGCGGGGCGGGACTCTCGCGGCACGCTCCTCTCGGGGGGCTCGGGAGCGCCCGAGGACCGGGCCGCGCTCTCGCTCTCGCGCCCCTCCAGCGAGCCAGCCCTCTCGGCTCGTTCCAGCTGCCCCGCGCCTGTCGCGAGCAGCTCCACCGCGAGCAGCAGCGCCACCGGCGGCCACCCCGCCACCAGGACGGGCTGCCAGGCCAAGCGCGGCGCCGCCGCCACGTTCGCGGCCAGCGACATCGCGATGCCCATACCGAATGCCAACCGCACCGCGTACCGAGTACGCCGACGCCCCGCGGGCTGGGGCTTTAGTAGCCCGATAGTCGCCAGTACCAGCAGGCCGTCGACCGACAGGGGCCACAGCGACGCCCCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9560-7823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHY01000035.1 Streptomyces sp. NRRL F-5123 contig35.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9559 29 100.0 32 ............................. CTCGCCGCCGGCGCAGCCCCCGACGGCCCGGC 9498 29 100.0 32 ............................. AACGACGCCGCCCCGCCGGCGCCCGTGAAGGT 9437 29 100.0 32 ............................. TCGCCGATGTACGCGGCGAACAGGGCGTCGGT 9376 29 100.0 32 ............................. ATGGTGTGGAGCGCCATCGCCGTGGAACCGGC 9315 29 100.0 32 ............................. TGCACGTGAAAGCCCGTGTCCGGCCCCCAGGT 9254 29 100.0 32 ............................. TGACGGCGGGGCTGGCCGTGACGCCCGCTTCG 9193 29 100.0 32 ............................. ACGTACGCCGAGATCCTGACGGAGCTGCGCTC 9132 29 100.0 32 ............................. CAGCGACTCGACCTGGCTGAGTGCCTGTGGCA 9071 29 100.0 32 ............................. GTGCCGGAGGCCGGCGGGACGGGGGTGGTGGG 9010 29 96.6 32 ........................C.... CGGGACGGGCACTATGTCACCTCCTCGGTGTC 8949 29 100.0 32 ............................. CCGCTTCGGCGAGTTCTTCGGCTTCGGTGAAG 8888 29 100.0 32 ............................. GGCTGGAGGAGATCTTCCAGCGGGCGATGCGC 8827 29 100.0 32 ............................. AGCTGGAGCGCGCCGTGGAGCGCGCCCGTGCG 8766 29 100.0 32 ............................. GTGGAACATCTCCCGGTGACCCCTTTCCCGGC 8705 29 100.0 32 ............................. ATCGACGCGTCGGCCTCAGGCACGTCTGCCCC 8644 29 100.0 32 ............................. CGCCCCGCACCCGTTACCGCACTACCTGACGA 8583 29 100.0 32 ............................. TAAGCGGTGTCCAGGGAGCCGCGAACCAGGGC 8522 29 100.0 32 ............................. CCGGGCACGGCCGGTGCGGACGGGAGTTTTCC 8461 29 100.0 32 ............................. GCCTTCTTCTCCATCGAGCAGTCCCACAAGCG 8400 29 100.0 32 ............................. ACGGCCGGAGCCACTGGCCGGGAACCGCCGAG 8339 29 100.0 32 ............................. CCCTTGATGTGCATGGGTCCGTTGCCGCGGCA 8278 29 96.6 32 ............T................ CCCCGCGGTCGTGCTACCGGCCCGGAGTGTGG 8217 29 100.0 32 ............................. TCGGTGACGATCTTGTCGAGTTCGTCGCCGGA 8156 29 100.0 32 ............................. GTCTTCGTCTTGGGAGACGGCGACACCGCCGG 8095 29 100.0 32 ............................. CGTGTCCGTCAGGGCGTCGCCCTGGTCCTGGA 8034 29 100.0 32 ............................. CACCACATTGACGAGGCGACGCCAGCGGCGAG 7973 29 93.1 32 ........................C...C ATCCCCGGGCTCGACGGGCCGGTGTCTCAGAT 7912 29 96.6 32 ........................C.... GGGGTGAACCAGGGTCCGGCCACCGCCTGGGT 7851 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.3 32 GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Left flank : GCGAGCGCCGCGGCGTAGAGCACGATGTCCGCCAGCTCCTCGCCGAAGTCCGGCAGCTTCTTCCGCCACGCGGTGAACGCCTCCCCCACCTCGGCGGTGAGCAGCCCGAACTCCAGTGCCACGTCAGTGGTGTTGAAACCCTTGGCGCTCTTGTTCTCCCAGGCGAGCTTCTGCGCCTCTGCGATGTCCACGGCCCCTCCGGCGGCTCTGAGTCGGCTGCGAACCGCAGCCTAGCGACGCCGTCCGGGAGCCCCATGGCCGAAGGGTGGACCGTCACCCGGTCGTGGGCGGCCCCGGTGGCGATGAGGGCCGAAGACGATTACGGGAACCCGGTGCTCGGGTTCGATACGGCAGCCGCCCGCGTGGTGCTCATGGCGTCCCCAGCCGTAGGCTGACGTTCCATGTACCGGCCTGCCCCGACCTGCACCCGCGGCATCCAGGCGCGACCGGAGTCGAGCAAAGAGATTGCAAAGCCCCTCTAACGCCGCAGGTCACGAAGT # Right flank : CCCCACTGGGCACCTGGCCCGAGACGGGCGCTTGCGCCAGGTATGACGCGAGGGCAGGTGATGTCCTTGGCGCCCGGTCCAGCTATGGCGCAGTTGCTACTCCGTAGCAACGTCCGGGGTGGCGGCCCCGCTGGCGTCAACGACGCGACCCCTCTCCGCACCGCCGGAGGAGAGTCCTTCGGCACCACCCTCACCCACAGCGCAGCCAAACTTCAGATTGTGCCGAAGTCGACCCCGCCCGTACGGACCAGGTCGACGAACTCGGTCCAGGCGGCCGGGCTGAAGGTAAGGGCCGGGCCGCTCGGGTTCTTCGAGTCGCGTACTCCGATGCCGCCGAGAACAGCGAGCGCGTCGGCGAACTCGACGCAGCTGTTGCCGGTGCCGTCGCTGTAGGACGACTTGCGCCAGGCCTCGTCGGGAAGCAGTTCGTTGGCCGGAACGTAAGTGTTAATGGCTCTACTACCTTCTTGCTAGTTCTTCCAGGAAGTCGATGGTGTCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30358-29417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHY01000035.1 Streptomyces sp. NRRL F-5123 contig35.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30357 29 100.0 32 ............................. CTGTTCCCCAACGCGCAGATCCTCATGGCGGG 30296 29 100.0 32 ............................. ACCTGCGCGCCTACCAGGCGCCATCGAGCGAC 30235 29 100.0 32 ............................. CATGTCCTGCGGGGTGAACATCCTTATAGCCG 30174 29 100.0 32 ............................. GCGCGGCTGACATCCGAACCGCAGCAGGACGG 30113 29 100.0 32 ............................. TAGTAGAAGCAGTGGGTGCCGTCGGTGGCGTA 30052 29 100.0 32 ............................. GCGGGCGTGGAGGGCTCCAAGACCGTCAAGGG 29991 29 100.0 32 ............................. CTGCAGTCTGGGCGGCGCGGTAGCGCTCCTCC 29930 29 100.0 32 ............................. GTGATCGCCGGGCCCGCATGGGCACAGGCGAG 29869 29 100.0 32 ............................. CACCACGCGTACCGGTCGCGCAGGTCGGACAT 29808 29 96.6 32 ...............A............. CACTGCACGGGGTGCGGCACGGATCACGACCC 29747 29 100.0 32 ............................. GTGCTGTTGATGATGGCCGTGCTGAGGGTGTC 29686 29 100.0 32 ............................. GGCAGGCGCTGGCAGGCCCGGTGGGAGACACC 29625 29 100.0 32 ............................. GCGGTGTGACGGACCTGTGACCGACTGCTGGT 29564 29 100.0 32 ............................. CCGCCGCCCTGCTCACCGACAACGCCGGGCAG 29503 29 96.6 30 ...................G......... GCCGTCCGCGACTACGGCCAGTGGGCCCGC 29444 28 72.4 0 AGGTC..................-...AT | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.8 32 GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Left flank : GGGTCCTGCCGCAGCCTGGCGAATTCCTCCTTGACCTGCGCCTGAAACGGCGGAGTGATCTTCCCCAGGTCGTGCAGCCCTGCCCAGAAGGCCAGCACCGCCCGCACTTTCGCCTCGTCGAGCCCCAGCGCTGCCGCGATACGGGATCGCAGCTCAGCTCCCAGTAGGTCATCCCAGAGCGCGGAGAACACCGCGGCGGCATCCAGCATGTGACACACCACCGGGTAGGGCCGCAACAGCCCCTTCTCCTTGCCCCATAACCGGCAGTCCAGGCAGACGCCCGCCGCCGCACCGAAGTCGCTCGCTTCCATGCCCCAGAGCTATCACCCCCCTCTGACAATGCGGGCTGACCTGGGCAAATGACTCCAAGCCGCGACTCCTCGCCCCATACTCACCACGTGCACAACGACATCTCTTCGGAAGCTGGCCAGCTTCCGGGCCTACGCGGCCAAGACAGCAAAGGGATTGCAAAGCCCCTCTAACGCCGCAGGTCAAAAAGT # Right flank : CCAGTCGCACGTCCCAAGAGCGACCGGCAGGCGCAGAAGCTCAGCCTTCAGTCGCCGAGCGGCCCATCCTCCGCTTCGAGCAGCAGCCGCAGCAGCAACCAGCCCGGGTAGCGGTCGTACGGCTGCACCGGGTTGGTGAAGATCTCGGGGGTGTCGAAGACCGGGTTGCCGTTGGGGCGGCGGGTGTAAGGGACGTGGCCGTAGTCGATGCCGTCGGTGGTGTCGTAGGCCAGCCAGGCGATGACCTCGTGTTCGCCCTCGCGTAGAGGGGTGTTGGAGACGGGGCCGGCGTTGATGCCGGACTCGGTCGGCTCCCAGATCTGGGGGACGGCGAAGACGAAGCGGACGGCGTGGATTTCGTGGGCCTGGGCGGCGGCGCGGCGTTCGAAGGTGGCGGCGGTGTCGCGGTCGCGGTGGTAGTCGTAGTCGGACATGACCAGGAGGCGGTCGCCCTGGAGGACGACGACGGCGGGGGCCTCGTGGTCGAGGATGGCCTGCTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 40123-41552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHY01000035.1 Streptomyces sp. NRRL F-5123 contig35.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40123 29 96.6 32 ........................G.... CGGCTGACGCCGCTTGGAGGCCGGCGGCTGAC 40184 29 96.6 32 ........................G.... AAACCCACCAGCGCGTGAGCCTGGGCAAGACC 40245 29 96.6 32 ........................G.... CGCCGCGCTGCTGCTGCCCTCACCGACGCGGA 40306 29 96.6 32 ........................G.... AACACCCCGGCGTACGAGGCGGCGGCGAGGAC 40367 29 96.6 32 ........................G.... GGACACCACACCGCCCTGAAAATGGTCAACGG 40428 29 96.6 32 ........................G.... GCCCGCCAGGGCCTGGAGTGGTGCGCGAAGCG 40489 27 93.1 32 ........--................... TCGGTCAGCGAAGGCGCCGACGTGCCGTTCCT 40548 29 100.0 32 ............................. GCGCTAGACCGCTTTTCCGACGCCGTCGACGA 40609 29 96.6 32 ......................C...... AGCTTCAGCCGCTCCTTCAGGCCGTCATCGAC 40670 29 100.0 32 ............................. CGCTTCAGCGTATCGCTGGCCTGGGCGAGCGT 40731 29 100.0 32 ............................. CAGCGTGGGCGGCAGGACAGGTCGGGCTGGAG 40792 29 100.0 32 ............................. ATCGTGTTCGAGAACCCGCCGCCACGTCAGTC 40853 29 100.0 32 ............................. GAGTTGCAGGAGGCGCTCGCCGGGTTGGCGCC 40914 29 100.0 32 ............................. GAACCGTTGCTCCTCCGCGGGGCTCAGGCCCA 40975 29 100.0 32 ............................. GCAGTCTGGGAGGCCTCGCACTCTGGGCTGAA 41036 29 100.0 32 ............................. ACCGCCCTGGGCCCCCTGGTACGCGGCCTGGG 41097 29 100.0 32 ............................. ACTCCGCGTCAGGCCCCGAGCGAGGCGTGAAG 41158 29 100.0 32 ............................. TTGGTGATGGGGCCGATGTCGGGGCCTGCGGG 41219 29 96.6 32 ............................A CCGAGCCGCTGGGTCTACCTCATCGGGTCCAC 41280 29 100.0 32 ............................. ATCCAGCCCGGCCCCCTGCTGCGGGACCGTGT 41341 29 100.0 32 ............................. TAGACGAGCGGCCGGTGTTTGCGCGGCGGGAT 41402 29 100.0 32 ............................. GTGGACTTGTCCAGCCTGATCGCCGCGGCGCG 41463 29 96.6 32 ...T......................... GCGACGGCGGCGCGGTCCCCGGTGTCACCCCG 41524 29 93.1 0 ............T.............G.. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.1 32 GTCCGCTCCGCGCGAGCGGAGGTAACCCG # Left flank : GTCTCCTCCCGCGCATCGTCACCGACATCCAGCATCTCCTCGACCCCACGACCGACCGTGAAGCCCCCGACCCCGAGGAACAACTCGTCGACCTCTGGGACCCCGTCACCGGCCCCATCCCCGGCGGCACCAACCACGCCACCTGACCCCTACGCGGGAGGCCCCGCACCATGCCCTCCATGACCGTCATCGCCGCCACCGCCGTCCCCGACCACCTCCGCGGCGCCCTCACCCGCTGGCTCCTCGAAGTCACCCCCGAGCTCTACGTCGGCTCCGTCTCAGCCAAGGTCCGCGAAGAACTCTGGTCCGCCGTCTCCGCCTCCACGGCCGCCGGCACGGCGGTCCTGGCCCACCCCGCCGACAACGAACAGGGCTTCACTCTCCGCACAGCCGGCACCCAGCGGCGAGAGCCGCTGGACTTCGACGGAATGACGCTGATCGCGTTCAGGAGGGAGGGTCAAGGGATGGCAAAGGCCCTCTAACGGTCCAGGTCAGGAAGT # Right flank : GCCCAAGAGTCCCTAACGGTGCATAACCGATTTGCGTGCGAGGACACGGTTTCATGAGATGTGCGAAAGGCTGTCCGGAGTTTCGCCCGGTCCGCTGTCGGCACAGTCGCCGGTGCCGAGGGTGTTGGCGATGTTGTACGCGGTCTTCAGAACGCCGTTGAGGTGGTCGACGGCCTTGTTGGTCGTGGCGATCGCTGTGGCGTTGTTTGCTTGAGCAGTCGCAATGGCCGCACCGGCGCCCGGCACCGAAGGCAGGCCTGCGGCCGTCAGGGCGGTCAGCGCCTGCTGCAGCGTGGATATCTGGGTCCGTACACCGTCTATGTTCTGCTGTTCCTGGTCGACGTCGTAACTAGCGTTGGAGGTGACGTCGTAGCCCACTACGTTCTCCGCGTCGTAGCCGACCACGTTCTCCACGTTGTAGCAGCCGTCGCCGTTGCCGCCCTTGGCGTCCTCGCGCTCCTTGGCCAGGTCCGCGTCAGTCGTGGTGACGTCGTCACGCA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCGAGCGGAGGTAACCCG # Alternate repeat : GTCCGCTCCGCGCGAGCGGAGGTAGCCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2169-988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHY01000050.1 Streptomyces sp. NRRL F-5123 contig50.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2168 29 100.0 32 ............................. GGCGGCATCCACGTGCGCACGAGCGGCTGGCC 2107 29 100.0 32 ............................. ACCATGTCGGGTGTCGGTGGGGCCGCGGTGGG 2046 29 100.0 24 ............................. CTGTCCCGTCAGGTGGCGCATGTC Deletion [1994] 1993 29 100.0 32 ............................. GAGACCGATCGGATGCGGGACGGCCTGGACGC 1932 29 96.6 32 ............................T CACGAGCGCTTCCCCGTTGTCCAGCTCGTCCA 1871 29 100.0 32 ............................. GCCTCGCTGCCATCGAGGAGAAGCAGGCCGAG 1810 29 100.0 32 ............................. CGAGTCCGCCGCCCAACGAGGGAACCCACCCA 1749 29 100.0 32 ............................. TTCGGGCGCCGGATGTCTGACCATGCGCTGAG 1688 29 100.0 32 ............................. ACCCAATTCCTTTTCTCGCGCGTTGCGGCGCT 1627 29 100.0 32 ............................. GCGCGCGTCGCTGCTACCTATCTGCGGCAGAC 1566 29 100.0 32 ............................. GCGCGCGTCGCTGCTACCTATCTGCGGCAGAC 1505 29 100.0 32 ............................. TAGTCGGGCGCGTTTGGGTTCCTTCTACGCCA 1444 29 100.0 32 ............................. TCCAAGACCTCGCGACGACGGTGTCCCACGTC 1383 29 100.0 32 ............................. GGCGTCGGGCAGACCGGCTACGGCTCGGACAC 1322 29 100.0 32 ............................. AAGGTCATCGCCGCCGCAGGCGGTTCGTCCTC 1261 29 96.6 32 .........A................... GACGTCTTCGCCCGTATCCGCCTCGCGGACGG 1200 29 100.0 32 ............................. CGTGTGGGTGGTTGTCGACGACGGCTCGCAGG 1139 29 100.0 32 ............................. ACCGCGTGCAGCGCCAGGGCCACGGTCGCGGC 1078 29 100.0 32 ............................. AACTGCTGGGCTGCTGGCTGGGACTCGGCGGA 1017 29 89.7 0 .............T..T.......A.... | G [996] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.1 32 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : CGGTGGGGTGTGAGCGAGCGCGACGGCGTGGGCAAGCGGGTATGGGCTGTCGTCACCAACGACGTTTCCACCGCCCCGTCGGTGTCCGAGCCGCTCGGCGGTGAGCGTCCTGGTGGGCGCTGAGGATGACGCCCGAGGGCAGTAGGCGCCGAGCTGACTTGCACAATTGATAAGCCCCGGATCACCGATCCGGGGCTTATCAATTGATCAGAGAGTGGGGACCGCGACGCCTGTGCATGGCCGCGGTGGGTTGACCCTCCACCGTTTCCTTGGATGCTACGGAGAAGCGGCGTGAGCCGGCCATAGCGGACTTCGACGCTGCCGGTTGGCTTCGGGCGGTCGACATTCCCGCGCGGGCTGACGTGGCACGCCGTGGGGCGTGGCTACTCTGTTCGTTGGGGAGGCAGCGGGCGGCATGCGATATTTTGCACCTTTGGTCCCAATTTTGGGAGTTGGTTGGAAACGGGTTGCCCAGGTGGAAAACCCGCAGGCCAGTCAGA # Right flank : GGCACTAGGCACGGCAAAAATGCTCGGGGACTGCTCCGGCTGCCGGGTCAGCTACCGCCAACGCACGAGGGACACGAACTTGACTGCTCGCGCGCAGTCAGAGGAGACCGGTGCGGCCTGGTCGGCGATCGTTCGGTCGGGGAAGTCCCGATCGGTGCCGGACGCCTTTGGCGCGCAGACAGGTTCAGCCCGCGGGACAGCCCAACCAGACTGTTCCCGTTGCTTGACCGAGCGGCACCCTCATGGAGCTCTGCCCATGCGGCAGGTGCCGAGCTGCTGTTGTCGTGGGGCGAGGGCGGATTTCAGGTCGTCGCGGTTCATGCGGTCGGGCTTCCGGGCGTGTTCCGTCGCGAAGGGTCGCGGGCGGAATCGACGAAGACGCTGCCTTCGCCCCGTGGGGATCAGCGACTGGTCCATGACCTTCAACGACGGCCGCTTCGTCCCCGTTTTTGCGGGGGACGGCGACAGCGAATCCAACTCCGGGCCAGTAGCGGAGGGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14159-11421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHY01000050.1 Streptomyces sp. NRRL F-5123 contig50.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 14158 29 100.0 32 ............................. GCACCCGCGCCCGCGCCTACATCATCGGCTAC 14097 29 100.0 32 ............................. CCGCTGCCGGCGCTGCCGAGGTCGATGCCGAT 14036 29 100.0 32 ............................. GGCCGGCAGGCACCCGAAGGCCACAGCACTGA 13975 29 100.0 32 ............................. ATCGAGCCCGCGGTACCGCCAACCGCGCCCAG 13914 29 100.0 32 ............................. TGTGGATCTACCGGCCAGCGCGGGCATCGCCG 13853 29 100.0 32 ............................. GGTGATTTCGTCGCGTACGCGAAGCTGGGGGT 13792 29 100.0 32 ............................. TCCTACAGAAGGTGGGGACGTTCCTCGGGGTG 13731 29 100.0 32 ............................. GGCTGCATCGTCCCTGGTCACAGGGTTGCAGG 13670 29 100.0 32 ............................. GCCTCGGCCTCGCGTTTCGTCGGGAAGTTGCG 13609 29 100.0 32 ............................. TCCCGCCCGGGGACTGGACGATCCGGCGCGCC 13548 29 100.0 32 ............................. TACATCGCCGCCGTCAAGGGCGACGCTGACCG 13487 29 100.0 32 ............................. AGCCCCAAGGCTCGGTTCCTTATTGCAGTTGC 13426 29 100.0 32 ............................. ATCAGCTCGCGGATGAGCGAACCCATGCGCGG 13365 29 100.0 32 ............................. GGGCTGAGACCTGCGCCGCTGCGATGGAAGAA 13304 29 96.6 32 ............................T GCGGCCGCCGGTGTGCCGACCGCGGACGACTT 13243 29 100.0 32 ............................. CGCGGTCCCTAGACTGCGGGACCCCGAAGAAT 13182 29 100.0 32 ............................. CGCGGGTTGTTGCTGTAAATCTCTTCGGTGAG 13121 29 100.0 32 ............................. ATGACCACCTGGCTGAACTTGCCGTTGAGGAA 13060 29 100.0 32 ............................. GGCAGGGGACGCCGAACCTGTCAAGGCGCCAG 12999 29 100.0 32 ............................. GACGACCGGCTCATCAAGCGGTTCGGTCGGCT 12938 29 100.0 32 ............................. GGTTGGGCGCTTGTCGGCGCCAATGTGGGCCG 12877 29 100.0 32 ............................. ACGGCGATCGCCCTCACGGCCAACTCTGCAAA 12816 29 100.0 32 ............................. CACCTCCCGGTGGCCGTACGGCCTCGCGAAGA 12755 29 100.0 32 ............................. CGGCCTGAGGCGCGCGCCCGCCGGTCCGAAGG 12694 29 100.0 32 ............................. ACGCGCGGCGAGCTGACGACGATGTTCGGCAC 12633 29 96.6 32 .......................A..... GCGCACTTCTACGGCCTGGAGATCAGCAATCT 12572 29 96.6 32 ............................A TCCTCCGAACCCTGGCGCACCGGTTCAAAAGG 12511 29 100.0 32 ............................. GCCTCGGAATCTGAGGTCCGCGAGCTGGACGA 12450 29 100.0 32 ............................. AGCATTGATCTTCTTCGTCGCGCTGTCGAGGG 12389 29 100.0 32 ............................. GGCCGGATCACGCTCGTCAGGTGGGCGGTGTC 12328 29 100.0 32 ............................. GTCAAGCAGACGCTCCAGCTCGACGACGGAGA 12267 29 100.0 32 ............................. GCCGCGCCCGGCGCGCCGTCCCCGGCTGCGCC 12206 29 100.0 32 ............................. GACGAGAAGCACGCCCGCGCCGTGACCGTGGC 12145 29 100.0 32 ............................. GCACGTGCACATCCGTGACGACGCCGGCACGG 12084 29 96.6 32 ........G.................... GGCGCGAGCGTTTCCGGCGGCGAGCTGCGTAG 12023 29 96.6 32 ..................C.......... ACACCCCGCACGGGCGGCGTCGTGGCGTTCAT 11962 29 96.6 32 ..........................T.. AACAGTGGCCGCACCGCCCGCGTGTACGCGAA 11901 29 100.0 32 ............................. GGTACCGCCCAGCGCCATCAAGATCGCACCCA 11840 28 96.6 32 ....................-........ CTGGCAGGGCGTACATTTGCACTTCACCGTGA 11780 29 86.2 32 .T........T.............AG... TACTAATGGGCGCTTAGTTCACCCGAGATAGT 11719 28 89.7 32 T............T..........-.... GCCACCAACTACGGGTAGGTGGGCTGGCGGTA T [11693] 11658 29 82.8 32 G..G......T.............TG... GAGAAGCGGCGACGGGGCAACAGGGTGGCCCG 11597 29 79.3 119 ...........CG.G.......G..C.T. TCGCTCCTGGCGCGTTGCCGCCCTTTCGTCTCTCTGCCGGTGGTGGTCCCCCCGTCTGGTGTCCCCGCGTGCGGTTATCAGCCAACACGCACCACAGACGCGAAGTGGTCAGCCCTTGA 11449 29 75.9 0 .T..G.T...T.........TC..T.... | ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 44 29 97.5 34 CCGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : CCCAGCCCCCCTCCACAGGCTGGAGCAAGGCGTCCAAGCGCCGCCGTTTCGGCAACCGGGCACCATAGCTTCCTCGGTGAGGTCGGCTGGTAAGGGGTCTGGGCCAGTGCTTCCGCTGCATGGAGGACTTGCGCCGGCACGGCCCGAAGCCGCGCAGCTGCCTCAGGGGCGTTGTACTTCGACGGCTCACCCGCCCAGGTGCCCCCGATCGCGGATGTCGCGAAGGGGGACATGCGCTGACCACCTTCGGAACGCCACAATCCTTGCCGCGCACGTAGGGCTTCTCGTCGTGCCCTCAATGCGGAACAGGCGAGCCGCGCGGGCGCTGAAGATCGGCCTGAGCGAAAGCCTCTGACGCTCTCTGAGGAATCTTGACGCTTCCACGTAAGCTTTTTGCTGGGCGATTGGACTCGCCGGTGGGTCTTTTGTCGTGTATGTACTTTTCTCGAATCCTTGCTGAAACAAGCGCCGCCCCTTGATAAAACAGCAGCTCACGAAGA # Right flank : ACCGGCAGCGCCAGCAGCGCACCCGTGAAAGAGCCCACTAGTAGTTGAGTAACTCCGCAGCCGCCGACGCGTTACCAGTGAGTGCACGCCCGACGTGGGCGTTGGGCGGCCAAGGGAGGCACCTGTGTATGAGGACGATGACGGGCGTGACCCGAGGTGGTGGCGCCAGCCAGCGTGGTGGCAGGTCTGGATTGCGGCGGTGGGCGCCGCGTGCGCTGTCATCAGCGTGAGGCGCTGATGCGGTCACCGGGGCCGCACCTGTAGGCCTTAACCGTGTAGGGCAGGCATGCCGCACTGCCATATACGGGTTGAAGCACCACCGGGGTTCAATGTCTTTGACGACAGCGGCCACAGCTGGGTGCGGACCAACCAGACCAAGGGGCAGGCGGCCGTCGCCAAGTGCGCTAAAGCCTTCGACTAAAAGCGGTCACGTCCTCTTCCTCACGAGAGCTTCGACGTCTGAGCGCACTGTGGTGCCTATACGAAGGCCAGGCCTCGGA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 27499-24162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHY01000050.1 Streptomyces sp. NRRL F-5123 contig50.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 27498 29 96.6 32 ............................T TCGGCCGCAACGACCTCGGCATCGCCATCAAC 27437 29 100.0 32 ............................. GACACCGAGGGGACCCGATGACCGACCAGCAG 27376 29 100.0 32 ............................. CGCTACCGGTTCTGCTCGGAATCTCCAGGCAG 27315 29 100.0 32 ............................. ACGGCCGGCTGCGTCAGGTACGTCCACGGCGA 27254 29 100.0 32 ............................. GACACGCCCGGAGTGCCAATTCCGCATCTTCA 27193 29 100.0 32 ............................. ACCATCTCGGCCAGCTCGCTGGCTCCGTAGTC 27132 29 100.0 32 ............................. GCACGCCTACGCGTGCGCACCGGCATCGTTCG 27071 29 100.0 32 ............................. AGAGGCAGCAGCGCCGCCGCGAGTGCGCCGTA 27010 29 100.0 39 ............................. ACGCTGGACTGGCGTACCGCGTGCAAGCTGAGCTCGGCA 26942 29 100.0 32 ............................. CGGGCGGCCCGGCGGTCCATTCCCCCGCCGAC 26881 29 100.0 32 ............................. GAGCGTGCCGCCGGATGGTTACGCGCCGGAAG 26820 29 100.0 32 ............................. GACCGCATCGCCGCCGGCGAGCCCGTCGACGT 26759 29 100.0 32 ............................. TGATCGGCCTGTCCGCCCAAGACCTCGCCGAC 26698 29 100.0 32 ............................. CGCGCTCGATCATGCGGTCTCGGAGCCAGCGG 26637 29 100.0 32 ............................. ACCCCGGGTGGCTCGCCAAGGCCGCCGAGGCA 26576 29 100.0 32 ............................. ACTGCGCCGCTGTCGGAGTTCTTGGAGCTGTT 26515 29 100.0 32 ............................. CGCTACACGAATTCGACGGAGGTCCGATGGTT 26454 29 100.0 32 ............................. CACACGTCGCCCTCCACACACGTCAGGTGCAG 26393 29 100.0 32 ............................. AGTCCCGTAGGGCTGTAGTAGGTCACCCAGAT 26332 29 100.0 32 ............................. GTCGGAAGCCCGGTGGGGTGGGTGCCGTCGTC 26271 29 100.0 32 ............................. CCGAACACCCAGACGGCCTCTTTGCGGCCGAC 26210 29 100.0 32 ............................. GAGCCCGGTTGGCGGGCCACGCGGTTTAGCCA 26149 29 100.0 32 ............................. GGCGAAGGGCCCGGCGGTACGCCTCGTCCATG 26088 29 100.0 32 ............................. ATGGTCGTGGGCTGGGACCAGGGGACCGCGGT 26027 29 100.0 32 ............................. GCCTCGTCGCCGAACGCGGCGGTGAGGGCGCC 25966 29 100.0 32 ............................. CAGGGAGACGACGAGCCGAACCCCGTCCCGCC 25905 29 100.0 32 ............................. ATCACGCCACCGCCTTCAAGGCCCGGGCCTGG 25844 29 100.0 32 ............................. CCCGCGGGATATGCGCGCCGTTCTGCTCTGGC 25783 29 100.0 32 ............................. TCCGTGATCGCGCTGCTGCTGGTCGAGGGCTA 25722 29 100.0 32 ............................. TCCACCATCGCCCCGGTCGCAGGCATCGGCCA 25661 29 100.0 32 ............................. TGCGCCGCCCGGTACGCGTCCACCGCCGGGCT 25600 29 100.0 38 ............................. AAGACCATCGGCCCCACACAGGTCTGGACCCAGGGGCT 25533 29 100.0 31 ............................. GAAGTGGGGCCAAGTGGGGGACAGCACAGGG 25473 29 100.0 32 ............................. GAGCAGCGCACCCGCACCGCCGTACTCCACCC 25412 29 100.0 32 ............................. GAGCGCGATCGCCGCTGGATCATCGACCGCGC 25351 29 100.0 32 ............................. ACCTTCGAGTTCCTGGCGCTGCCGCAGGTGGT 25290 29 96.6 32 ............................A CACACCGGCCGCGCCCGCCTGGCCACCGCCGC 25229 29 100.0 33 ............................. GAGGAAAACCCGGGCGAGCCTCACAAGGGCCGC 25167 29 100.0 32 ............................. CTGACAGCGCTGACGGCCACCCACGGCAAGGC 25106 29 100.0 32 ............................. GCGCTGGCGGGGAGCTGGGGTTCGATGCGGAA 25045 29 100.0 32 ............................. CACCGGCACCAGCCAGGCATCCGCCGCCCGAA 24984 29 100.0 32 ............................. TCGTCGTGGCGGTCGAGGAACATCCGCATGCT 24923 29 100.0 32 ............................. TCCATGCACGTCAAGGCCCGCGGATCGCGCCG 24862 29 100.0 33 ............................. AACCCGAAGCGCACCGAGAACCGGTCCTGGACC 24800 29 100.0 32 ............................. TCCGCGACCGCGAGCAGCGCGCCCGGCAGATC 24739 29 100.0 32 ............................. GGCCTCGACAACCGGCGAGTCAACCTCCGCAT 24678 29 100.0 32 ............................. AGATGGAGCGGGGTCGCCCCCGGAGACTCGGG 24617 29 100.0 32 ............................. TACGCAGTGGGGTAACACGGACCACTTGCTTG 24556 29 100.0 32 ............................. AAAGAGCGCGAGGCGATGAAAAATGGCTGACG 24495 29 96.6 32 ............................A ACGGGGTACACCGACTCTGACACTACGCCGGA 24434 29 100.0 32 ............................. GGCGGTTCCGGGAACGGGGCCAAGGGACCGAA 24373 29 100.0 32 ............................. GCCTGCGCCGGACACCAGGCGGTCGCCGCATG 24312 29 100.0 32 ............................. TTTTCCATCTCGTGCGGGTAGTCAAAGCGGCG 24251 29 96.6 32 .............T............... GCCGGCGTGCACCGGTCCTCCGTGATCCGGGC 24190 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ======================================= ================== 55 29 99.7 32 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : GAATCCGTGGGCCAGCGGGTCCTGGAACGGGTAGTGGCGGAAATTGCGGAAGGCGCTGCCCTCGTGGGCGAGTTCGATATCCATGGCCAGGAATCCTCATGGCAAATAATTAAGCCCCAGATTAATGACCTGGGGCTTATCAATGGAGCGGATGACGGGAATCGAACCCGCGCTCTGAGCTTGGGAATCACGGGGGCTCTGCCGAGGTACCTGCTGTTCAGATGCCCGCGCGCTGTCCGGCGCCTCGCGTCCGCGTGCCCGTGTCGGGCCGTGGCTGTCCGCAGCGTACCGCTGGAGCTGGTGCGGAAGTGGTGCGGGTGGCGCCTGCGCGAGCGCTGCAGTCATCTGGGCGGTCGTCACCCGGCGTTCCATGTGGCCGCCGTACTGTGTTCGTTGGGGACGTGGGTGATGATGCCGCGGACGGAATGTCCTTTTTGTCGCTTTCTTTGAAGTTGGTTCCATGCGGGTCCACCCGGTAGCAAACTCGCAGGTCAGTCAGA # Right flank : GGCACTGCCGTCTACGCCTGCACGGAGCCCGGCTGCTCCCCGTAGCCGCGGGGCCTCAGGCAGGACTGATGAGAAGCTCTCCGTGCAGCAGTGCCACGCCCCTGTAGAAGGTGTTCTGATCCGACAGAGTTTGTCTTCTCTGGATAGAATTTGATCATTTCGCGCTACTGTGTAATGACACTGCCCGCATCCGGTTAAATGGCCGCCGTGCGTGGCGACGAGGGCGGGGCGATGCCCCTGGGGGATCGGCTGGTCGGTGCCGCCAGGACCGTGTGGGCGAAGCACGACAGGGACACCGGCAAGTGGCTGCCGCTGTGGCGGCACATGGCGGACAGTGCCGCTGTCGCCGGGCTGTTGTGGGATCACTGGCTGCCGCGCAACATCAAGGAACTGATTGCCGAGCCGCTGCCAGTCGGCCAGGACGACGGGCGACGGCTGGCCGTCTGGTTGGCGGGTACGCACGACATCGGGAAAGCCACGCCTGCGTTCGCGTGCCAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //