Array 1 468616-468944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053286.1 Serratia marcescens strain FZSF02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 468616 28 100.0 32 ............................ GATTCGAACTTGCGTCCGCCGGCCTCGTCGAT 468676 28 100.0 32 ............................ AATAGATGGCCCAGTGACTGATGAAACTCTGG 468736 28 100.0 32 ............................ AAGTCGCGCTACTGCGCAAGCACCTCGAAGAC 468796 28 100.0 32 ............................ GTCTCCGTCGGCAACGGTTCCCATCGGATTTT 468856 28 100.0 32 ............................ TTTTCGACCATGTTCACGGTATCGACTTCGAT 468916 28 85.7 0 ....................A...ATG. | C [468938] ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCTGCTGGCGGTATTGGGGCTGGGCAAGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACTATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATCCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAATGAGGTGTGGGGCGACGTGATGATGATGCTGATACTCGGTGTGGTCTACACCCTGCTGGGCTTTGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAACGGCGGGCGAGTTGATCCCCTCATTGACCCTTTTTTTGGCGACTATAATTAATGCTTTTAATTTCAATAAAATGCATTCTTTGCCGGAAAAAGGGGGTTGGGGTGAGTAAAGGCTATTACCTTTTGCTCTCAGTAGGTTAGGATCACTTACTAACT # Right flank : AGCACCACAATGGGTGCCCATTTGTTGAATGCAAGGGGGCTTCACCCCACCAACTCCAGCCCCGCCACCCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGCTCGTTGGCGCGGAAGGCATCGATCTGCGCCAGCGTCTCGGCGCCCTGCGGCGACAGCCGCACGATGTCCACCAGCCCCTGCATGTTCGGCAGCTCGTTGCCGAGGTTATAGCAGTAACCGCTCATCGTCTGGATGCCGTTGAGTACGAACACCTGCTGTTGTTCCTGCGAACGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCGCGGTTCTCCGAGCGGGCGGTGAAGCAGCGCGCGGAATAGGCCAGCGGCAGATGGCCGTAGCTCAGCACCTCCACCTCGAAGTCGTGGCGGAAGCCCAGCTCGTCGCACTGCGTCAGCAGATTGGCCAGCCAGTCGCGCGACAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 472492-473122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053286.1 Serratia marcescens strain FZSF02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 472492 28 100.0 32 ............................ TGGAACAAGACCGAGGCCGACGGGCGTTATGT 472552 28 100.0 32 ............................ AGGGGCTGATTACAACGCTGAAAAAGCGTAAG 472612 28 100.0 32 ............................ TTCCTCTGGCACGGTTCGAGCGACGGTATATC 472672 28 100.0 32 ............................ TTGCGTTCCCTTTCCGCCTGGCGATTACGTGC 472732 28 100.0 32 ............................ ATCCCCAGCGGCGAGTTCAATATCTCGCAAAA 472792 28 100.0 32 ............................ AGAAACTCACCTTGCTTGCGGTATTTGCGCTG 472852 28 100.0 32 ............................ CAGCCGTCGTAATGCGGCAACAGCTGCTTTTT 472912 28 100.0 32 ............................ TGGCAAAAAAAATCCTGCCTCAATTCCCCGAT 472972 28 96.4 33 ...........C................ CCAGTCGTGCCAGCAGTTGTAGCCGTTGTTCCA 473033 28 100.0 32 ............................ TTGTCCTCGAACGGTATCAGCCCGGATACGCG 473093 28 96.4 0 ....................A....... | A,A [473113,473116] ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATGGCCGCTTCGGCTTTAAACCGGCCGCCGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACCACCGGCAATAGATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTCAAAACTCCAGTTTCACCAGCTGTATATAACTGGCTATTGGGCTAATGCAATTGGTGATAATACCAATCTGGGTGCCCGTCAATTTTCTTTCATAGATTTGAAAGTAACTCTTTTCTCCAGTCTTACTTGCGAACCCTTTTTTGAGCGGTCAATTTAACTTATTGATTTTTTATGATAAGTCTTTAAGTGATTTTAAAAAGGTTTTTTGACACAACAGATAGATTTTCTATAGAAAATCAGCTGATTAGCGCTAATCTTCAACA # Right flank : AAAAGTAATATCTACTGAGCGTATTTCGAGAGTGATCAATAAGTGGATAATTTTATTTTTCTGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGTAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCAAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAGCAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGAGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 481947-483720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053286.1 Serratia marcescens strain FZSF02 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 481947 28 100.0 33 ............................ CGGGAATGTCTGGATATTCCAGTGAAAGAAATC 482008 28 100.0 32 ............................ TCGCCGCATCCCCATCGTTGATTACGACGAAC 482068 28 100.0 32 ............................ ATCGGCAGCGCGGAAGGTGGCGACAAAATCCT 482128 28 100.0 32 ............................ GCACTGGCGAAAGCGTTGATCGTTGATTTCGA 482188 28 100.0 32 ............................ CCAAAACAGAAACGAGAAATCAAACACAACGC 482248 28 100.0 32 ............................ AAGGGCTACATCTGACGGTCAGGGTAAGCTTA 482308 28 100.0 32 ............................ AGCCCGTCAATGTTACGCCGCAGTCATATATC 482368 28 100.0 40 ............................ ACCGGCTTTTGCGCCGACATACCGCACTGTCGGGAGTCAT 482436 28 100.0 32 ............................ TGCTGAATTGTCTGAAAATGGATACCAGAAAC 482496 28 100.0 32 ............................ ATGAACGGATATTTTCGTGCATAGGCATTATG 482556 28 100.0 32 ............................ ATGAGCACGTTCACCTCGGGCATGGCGTCCGG 482616 28 100.0 32 ............................ TTCTTCAGCTCAACTTTCGCCGCGGCGACTTT 482676 28 100.0 32 ............................ ATAAAGCGCAACCCGTCGCGCTTTATCAGCTA 482736 28 100.0 32 ............................ TCCAGCGAGTTATCCAGCATCAGGCTCACCGT 482796 28 100.0 32 ............................ AGCCGCTTTCCGGCTGGCAGGTGCTGGCGCAG 482856 28 100.0 32 ............................ GTCCACGGTCAGCTTGAAGTAAGTACACTCGG 482916 28 100.0 32 ............................ TGATTCAGGAGTCGCTGTTTGAATACGACAAC 482976 28 100.0 32 ............................ AGCGCAGGATTGATTATGCGCGGAATAATCCT 483036 28 100.0 32 ............................ AGTGAAAACAACACTCAGGCCTATATTGATGC 483096 28 96.4 32 ...........C................ TAAATCGGAGCAGGTTGCGCGTTGTGGAAACT 483156 28 96.4 32 ...........C................ CGGTTCTCTCCCTGCCGGTCCAGCTCGTCCTC 483216 28 96.4 32 ...........C................ TGGGGGCGGGGAACGCGCAAGGCCAGGAACCC 483276 28 96.4 32 ...........C................ GACTACGAAAGCTATCTGCTGTGCGATATCAA 483336 28 96.4 32 ...........C................ TGGCTAACCAGGAGGCGCAGCCGGTGGCATGG 483396 28 96.4 31 ...........C................ TTTAAAAGGCATAAACTATACTCCCTGCATA 483455 28 100.0 32 ............................ AAGGCCTTTGGCTAATGGCAGCTTTTGGATTG 483515 28 96.4 32 .............C.............. ATGGGAATGATGCCAAAATTTGCCAGCCCGGC 483575 27 89.3 32 .......A......G...-......... TGGTCGACGGCAAGCAGGTCTCGGCATTTACC 483634 28 100.0 32 ............................ TAACCAGCGGCGCTGTTAGGATGGTTGGTGGT 483694 27 85.7 0 .............C.A....-..T.... | ========== ====== ====== ====== ============================ ======================================== ================== 30 28 98.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGCTGACGGCGCTGGGGGGATTCGACTGGATTAAAGGGTTGCGGGACTATGCCAACGTGTCGCCCATCCAGACAGTGCCTGCTGAGACGGCTTTTCGTACGGTGAGCAGAGTTCAGGTAAAGAGTAGCGTAGAGCGTATACGCCGCCGGGCCGTCAATAAAGGTTGGCTGACTGAAGAACAGGCTCGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCATTTATTACCTTGAAAAGTCTCTCCACCGGACAACACTTCCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTTAGTTTTTATGGGTTAAGCGCGTCCGCTACGGTGCCTTGGTTTTAACCCTTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGGTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTTGTTCA # Right flank : ATAGGAGGGATAAAACTTTACCGACATCTGTTAACCGGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACAAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCCTCAGCGCCGTTGAGCGATCTCCTGCCGGGCAGTGAAACGCCAGCGTCAGTTCCCCTTTGCCGGCCTGGTGTTCTGCCATGCGGCGCGCCACGTCAGTGGTGATGCCGGTGTACAGCATGCCACTCGGCAAACGTAGCATATAGAGGTGCCAGACTGGAGTTGTCATCATTTTTCCGAATTAGATAAGGCCACAGTCTGTCACTATAATGCGGCACCTTGCTTTAATTAATTGACTTTAAAAAATAAAATCATAAAAAGTAAACGTCTTTGGGCGGAAAGATACTGGCTTTCTTATCATCAGCTTGCCCACGTTATACTCGTTCAAACATCTACTGCCGTACAGGCAGCTTAGAAACTGTCACGGATCAGGTCCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //