Array 1 12014-14544 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRL01000051.1 Rhodovibrio sodomensis strain DSM 9895 scaffold0051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12014 29 100.0 32 ............................. TGTGCTCGGTGCCTGTAACACCGATTTCGGTT 12075 29 100.0 32 ............................. TTGCGGGAGCAGGGCTACCGAAGGGCGCGCTG 12136 29 100.0 32 ............................. CCCCGCAAGTGATAACCCGCACCTGACCGCCG 12197 29 100.0 32 ............................. CGCAGGGGGTTAGCGACCCGCTCGACCTGATG 12258 29 100.0 32 ............................. ACACGGCAGGCAATCAGGTCGCGGCGTTCGCG 12319 29 100.0 32 ............................. AAACATCGTCCCTGGAGCCCGGCCGATACTTC 12380 29 100.0 32 ............................. AGCGCGTCGTGGCCGTGTCGGGTGGTAGCGTG 12441 29 100.0 32 ............................. GACGTCCGCGACGAGTTCGCGAGGTTGTTCGG 12502 29 100.0 32 ............................. GTCATGGCTATTACATAATAGCGAACGCGGTG 12563 29 100.0 32 ............................. ATTAGGAAAACTGCAAAACCGTATCCCCTTGG 12624 29 100.0 32 ............................. GTCGTTCTCGCTCCTGGGTTGGATCGTGGGCA 12685 29 100.0 32 ............................. GTACAGGTGAGCGCCAGCTTCACATTCCTTTG 12746 29 100.0 32 ............................. TACGCGCCCGGCCGCGAGTATAAGCCGGAGCA 12807 29 100.0 32 ............................. TCCGGGCAGATCGCATCTGTCAGTCAAGTCAC 12868 29 100.0 32 ............................. CTGCTTGATCTCCGGGTTGCCTTTCTCCACCG 12929 29 100.0 32 ............................. TCCGTAACGTTGGCTAGCACGGTGCTGTAGTC 12990 29 100.0 32 ............................. TCGCAGTAGTATTCCTGCCGAAAGTGCGCCTC 13051 29 100.0 32 ............................. CCGGCGTTGGCTGCATGCGCTGCTAGATCGCC 13112 29 100.0 32 ............................. CCGATCAGACGAAAAACGCGGGCACCAGCGCG 13173 29 100.0 32 ............................. ACACGGCGAACCAAGAGCTTGCGCGCCAATAC 13234 29 100.0 32 ............................. CAGCTGGAAATCCTGCCATGAGCCGCAACACG 13295 29 100.0 32 ............................. CAGACGGGTAAACCCTGGTGGTGGCGGCTGCT 13356 29 100.0 32 ............................. TACACCTTGAGTGGTGCCGTAGCCGATTGTCC 13417 29 100.0 32 ............................. GCGCGAGGTGAGCACGCACTTCCTCGCTTGGG 13478 29 100.0 32 ............................. ACCTCTGGCGTTGCCTTCTCAGCCATCACGGC 13539 29 100.0 32 ............................. GCCGTCGATTTCGGAGCGGCGTTTACCGGCAC 13600 29 100.0 32 ............................. CCAAGACGATCAAGAGCATGATCCCGAAGATC 13661 29 100.0 32 ............................. CCGTCGTCCTCGTCACCGTCTGGTTGCTGGTC 13722 29 100.0 32 ............................. CCGCGTTGGCGCCGCGCCTTCGATGATCGGAT 13783 29 100.0 32 ............................. CGATCAACGCGGCGATATTGGCGTTTATGATT 13844 29 100.0 32 ............................. GGGTTGGACTTCTTTGAAGGCAACGCCGTGAA 13905 29 100.0 32 ............................. CGATCAACGCGGCGATATTGGCGTTTATGATT 13966 29 100.0 32 ............................. TTCCTCGTCTGCGTGCTCTTCGGCTGGGTCGG 14027 29 100.0 32 ............................. TTCAGCACCGTCGGCCGCACCTCGATCACCGG 14088 29 100.0 32 ............................. AGATCCGGCGTCGAGGCCAGCGGCAGGTCGTA 14149 29 100.0 32 ............................. ACACGACGCTCGACGTCTCGGCGCTGCCGGAC 14210 29 100.0 32 ............................. CGGTACTCCCGGGCCTCGACCGCCTTGCGGCC 14271 29 100.0 32 ............................. TCAACGCCGAGTTGGGCAATATGCAGGACGCG 14332 29 100.0 32 ............................. CCCTCCCAGAGATCCGTCCAGGTGTCGGTGGG 14393 29 100.0 32 ............................. GTCAGCGTCAGCGTGCAGGACAGCGGGCGCTA 14454 29 96.6 32 ............A................ TAGTCGAGCAGGCGCGTGCGCGTGACCTGGTC 14515 29 93.1 0 .........................G..T | C [14539] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.8 32 GTGTTCCCCGCGGGCGCGGGGATGAACCG # Left flank : TATGTTCCGGGAACAGCGGCTTATGAAGCGGTTGGTCCCCCTGGTTGAGGACGTGCTGACCGTGGAAGGCGCGCCGCCACCACCCGTCCAAGCGGAAGCGCAGCCCGTTGCATTCGACGATGCGGAAGGTGAAGGCGATGCTGGTCATCGTAGTGGCTAACGTACCGCCCGCTCTGCGTGGCCGACTGGCCCTCTGGCTTTTGGAAGTGCGCGCAGGTGTGTACGTTGGTCGCCTCTCGAAGCGTAACCGCGAACGGTTGTGGCAGACCGTTATCGACAACCTTGGCGAGGGCGATGCTGTTATCGTGACCCCGGACGCGAAGGCGGAGGACGGGTTTGCAGTACGGACCGCCGGAGCCAACCGTCGCCGCCCAGAGGATTGGGATGGTCTGACGTTGATCGCGTTTCATCCCGAAAACGATGCCGCCAGCGAACCTGATAGTGCTGGTGGTGTAGCGGCAAGCGGATTAAGTCAGTAGTATCAGGAAGATACAGGAGCA # Right flank : TTTAGTGGCTTTAGTCTGCGGTTGTACGATTACGGTCATGCCAGCCGTGTTCATGTGAAAACGTTGATCTGGAAGCCGCATGCACCGCCACCACGGCAACCTTCTCTGCGCCCCCTCGGACCTGCTCCGCTTCCTGGGCTGCCCGCACGCGACCTGGCTCGATCTCAAGGCCCTGGACGCACCGCTTGAGCGCGCGGCCGACGATCCGCAGATGGCGCTCATCCAGGACCACGGGCACGCCCACGAGCGGGCCTTTCTCGACGACCTGAAGGCCCGCTACACCGTCACGGAGATCCCGGCGGACACCGCCCTGGAGGAGCGCGCGCAGGCAACCCGTGAAGCCCTGCAGAGCGGCGTGCAGGTCATCTTCCAGGCCACCCTCCTGCAACCGCCCTGGCACGGCCATGCGGACTTCCTGTGGCGCGTTGAGGCGCCCGACGCGCCCGGCGGCTTCGCCTACGAGCCCGTGGACACCAAGCTCGCCAAACACGCGTCCGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24629-24062 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRL01000009.1 Rhodovibrio sodomensis strain DSM 9895 scaffold0009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 24628 27 100.0 33 ........................... TCGTCAAAGACGATGCCCGTGCGTCACGCCTTG 24568 27 100.0 33 ........................... TAGCGAATTGGGCGTTCGGGACCACGAATTCAT 24508 27 100.0 33 ........................... GGACGGCGGCACCTACCGCCCGTTCACAATGAG 24448 27 92.6 33 ...G........T.............. GCGTTATAAGAAAGTTGAGAAACGCTTATAACC 24388 27 96.3 33 ...G....................... GCTTCGCGTCCTTCTGATCTCTCTCTGTCCGCG 24328 27 92.6 33 ...G.....................C. GTTGGCGCCCAGTCCGAGGAGCAACGATCTGCG 24268 27 100.0 33 ........................... GTACTCGGTCACGTCGAAGGCTCGCGGGCGACT 24208 27 92.6 33 ............T....T......... GGGGATCGCCGTCCTGTGTGAGACCGACGCCCC 24148 27 96.3 33 ....................T...... GATTCCGGCAACCGGTGAGCATCCGGATGAGCC 24088 27 85.2 0 ...G.......C.....G.....G... | ========== ====== ====== ====== =========================== ================================= ================== 10 27 95.6 33 GTGAGCTGCCGGGCAGGCAGCTGAGAA # Left flank : CGACGGGGCGATCGGCAGCTGCCGGCAGATCGGCTCGACCCCGTAGACCGTGCGGTGATCGTCGATGAACGCGATCATGACTTGTTGCGGCGGTCGAGCTCCGCCTGAGCAAAATAAGCCGAAGCTTTGCGCAGGATCTCGTTCGCCCGCCGGAGCTCCTTGTTCTCCCGCTCCAGCTCCTTGAGGCGCTCCTGCTCATCGCTCGTCATGCCAGCGGCTGTTCCCTCATCACGCTCCGCCTGCCGCAGCCAGTTGCGCAGCGTCTCAGGGTTGCAGCCGAACTTCTCGGCGATCGAGGTGAGCGCCGCCCATCGTGAGGCGTACTCGCCCTCATGCTCGCGCACCATCCGAACGGCGCGCTCGCGTAGTTCCCGCGGATACGGCTTCCGGTTCGTCGTCTTTCCCATGGGCTCCAGTCTCCCAGACGTTGGAGCCTCCGGAAAGCTCGGGGCGGTTCAAGCTGAGAATTGTGCCGGCCGCTAGGGACGGCTCTCAAACTC # Right flank : GAACGCGCGCCGACCCTCCAACTATACGCGGGCGTGGGCCGGCAGATGGGCGGCTGAGAGGATCTTTTTGAAGCCCTCGGCCAGGGCCATGGCGTTGGCCAATGGACAAGCGGATCGGAATACGACCGTTATCCATGTGATCCAGGCCGGTAGGTGGACTGTGGCAAAAGTCCGGCCGAACCTGATCAAGCGAGCGGGGCGCCGCCGCAGCAGGGATCGACGTTGTTGCCGCAGCTCAGGCACTGGACGTGGCCGTGAACCTCGACCATGCCGCGGTCGCTCAGACAGAGCGGGCAGCGCGGGTCGCGCGGACAACTGGCGCCCTCGACAGTGTGTTCGCGGCTCTGAGACTCCATGCGATCGGTCATGCCCTGAATATAGCGGCTCGCCTCGCTGGACGCGACATCGAGATCCAGGGCGGCGACCCGATTCCGGTCATCGGTGTCGGTATATCAGGTCGCGATTACCGCCACTCCACGCGCGACCTGCACGATTTGTTA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCTGCCGGGCAGGCAGCTGAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 26861-25992 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRL01000009.1 Rhodovibrio sodomensis strain DSM 9895 scaffold0009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26860 28 100.0 32 ............................ CACATTGTCACGAGCACCAGACGCTCGACTGG 26800 28 100.0 32 ............................ TACAACACGGACGCGGCGTCGCAGAACGCTGA 26740 28 100.0 32 ............................ AGCCGCGGGGGCCGGGGGCGAGTTGCTCCTGC 26680 28 100.0 32 ............................ ACCACCCGGTCGCCAGATAGCGGGATTGGGTC 26620 28 100.0 32 ............................ GAGCGGATACCAGGTCGAGCCGTCGTCTGTGT 26560 28 100.0 32 ............................ TCGGTGTGGCGGGCGGCGCCCGCGGTGTCGCA 26500 28 100.0 32 ............................ TCGGCCATCTGCCGTGGCAGGCCGGCCATCCA 26440 28 100.0 32 ............................ AATGGGGACCTGGCAGCTCCTGATCGCACAGC 26380 28 100.0 33 ............................ AGACAGCGCGCGCAGCTTGGCGCTGGACTGAAA 26319 28 100.0 32 ............................ TACCACGTACTCAAGAGCCATCCCGGCGAGAG 26259 28 100.0 32 ............................ ATCATTGGGTCGCAAGCCAAAAGTCTTGGTAA 26199 28 100.0 32 ............................ TGGCTGGCGCCCGATACCCTGCAGTTCATCGA 26139 28 100.0 32 ............................ CGGCACCGTCCAGTCGCACGCGACCGCTGTCT 26079 28 100.0 32 ............................ TCCCGTATCCGCGCCGTCGAGGCGAATGTCCA 26019 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.3 32 GTGAGCTGCCGGGCAGGCAGCTGAGAAT # Left flank : ATGGGTGTGGAGTAGGCGTGTGTCGGGCATATCGGTCCGGTGTCTGAGGTCGAGATCGGTAATATGGGTGCACCATCTGCGGGCCGGCTTCCGATTCCGGATGACAAAGGCTGTGTACGGTCTCCGCCGGCCGTTGCGACGCCTCAATACGGACATACCCTCTTTTTGTAGGGTCGCCGCACCATTACCCGGAAAGCTACTGAGGGGGCAAGCGGCCCTCTCTGCCATCCATCGGCCATAGCCGGATTGGCCGTTTGGCGCTCTTTCTCACCTGTGAATAAGACCTAGAGCGGCATTAGCTGGTTCGGGTGACTGATCAGGATTAAATGTCGAGGGCGCCCCTTCGGCCCATCTGACCCTTGAGCGGGCTTCCTTCGCGCCAAGAATTTGAAGGTTGTGGAAGCTCAGAGGGTTAGCCGCGACGCACATAAACGAAGGTGGGTACGGCCAATTTTAGGGCAAAGTCCACAAAACTGCGCCATATCCGCCCTCAAACACCC # Right flank : TCCCGGCTTTCTCGGAGGCTGTGGTGTTTGGACGATCAGGCCGCCATGGCGGCCTGATCGTCCAAATCGAAAAATTTCGCCTCGGCCTCCGCCGGCGGGATATGGCCAAGCGGTTCCAGCAGGCGCCGGTTGTTGAACCAGTCGACCCACTCCAGGGTCGTCAGTTCCAGCTGTTCCAGGCCGCGCCACGGACCCAGGCGGCGGATCACCTCCGTCTTGTACAGCCCGATCACGGTCTCCGCGAGGGCGTTGTCGTAGCTGTCGCCGACGCTGCCCACCGACGGCTGAATGCCCGCGTCCTGCAGCCGCTCGGTGTACTTGATCGAGACGTACTGAACGCCCCTGTCGCTGTGATGCACCAGCTGGCCGTTTGAGACCGGCTGACGGGCGTGCAGCGCCTGCTCCAGGGCATCCAGCACAAAGCCGGTCTCCGCGCTGTGCGAGGCTCGCCAGCCGACGATCCGCCGCGCGAACGCGTCGATCACGAAGGCCACGTAGGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCTGCCGGGCAGGCAGCTGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 35907-36595 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRL01000009.1 Rhodovibrio sodomensis strain DSM 9895 scaffold0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35907 28 100.0 32 ............................ TGTGCGAAGCGCTCGAGGAGGCGGGAGTCGAG 35967 28 100.0 33 ............................ AGATAGTGAGCGAGTGGAAATACGTCGCGCCCG 36028 28 100.0 32 ............................ CACATCCGCCGGATCGCTGATCTTCACCTCCC 36088 28 100.0 32 ............................ CGGCAGAAGAAGCGCGCGGACACGCTGGCAGA 36148 28 100.0 32 ............................ ATCGCCGAGGTCATCGCCGCGCACGAGCAGCA 36208 28 100.0 32 ............................ CTGGAAAATCCGCAGCGCCGTGTCGGTCGGCA 36268 28 100.0 32 ............................ TTTTCGAGGATAGGATTCGCAGGGAGAGCGTG 36328 28 100.0 32 ............................ GTTCCACAAAACCGAGACCTACGGCCAGAACC 36388 28 100.0 32 ............................ TCGCGGCCGTCGTCGTCGAAGCGCTCCATCTG 36448 28 100.0 32 ............................ TGAGACAGGAGATCGTCATGACGGCGACGAAC 36508 28 96.4 32 ..................C......... ATCGGGTCAGCGTGGAGCTGATCCACGAAGCC 36568 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 32 GTCGGCCGCCGGACAGGCGGCTGAGAAG # Left flank : ACGACGACACCGAGTTCGCGGTCTACACCCGCGACCGCGCGGCCGACCAGCTGACGCCCGCGGCGATCGATCGCGAGGAGCGGCGCTATGCCAGGCGTGCGAAAGCGAGGGGCCTCGAGCGCGCGTCCGAGGAGATCGTGAGGGCTCGCTGCGGGCGGCTCGCACAGAAGAACCGGGATGATCGGAAGCTCGGACCGAAAATCTTCGTTCCAATGCGCTCTCGCTCAACGGACAACCCGTTCTCGCTCGTGATCAGGCGGGAGGTCCGTGAGGCGCCAGCTGAGGGCCTGCTGAACACATACGGGTTGTCGCGCGCAGACGCCTGCATCGCCGTTCCTGAGATCTAACCGCACGACGCTGGCCGACCCTTCGTGCGAAAGGGTCGGTCAGCGTTCTTGGAAAAAGCAATGACTTACGCGTCAGACCGAAAAACGAAGCCAGGAGTACGTTTCTAGCTGCTAGGCTACTGATATATCCCAGACAAGTATTCAAAAAGACCC # Right flank : GGTCCGCTGCGACAGCGAAGATCAAGCGGTCCGGGGACGCATCCGGCGCCTATCCTGCTGGAACAAACTCGATCCCTGCCGCCGGCGCGCGGCGCTCGGCCTGATCGCCACAGAACAGGTCAGGCCCCATCCTTCTCCGCCGAAATCGATGCCTCGCAAATGGCGCGCACATTCCCGAGGAGCTCGCCGGGCTCGACCACCAGCACGTTGTAGACGTTGTTGACGTCGCTGCCAGTGAACAGCCCGGCAAACCGGTGAGCGGCCAGGACCTCGTTCTGGTAGTTGACCTTACCACCACGCGTCAGTGTACCCCGAGAGTCAGGGTTGTCCTTGTGCCAGACCTCCATGCCCGTGCGCAGGTAGTCGGCGTCAATCAGGTCCCGGATGCGTGGGCGCCAGTCCCGGCTCTTGCGGCCGCGCTTCTCCTCGCGGATTTCCATGTTGCGCTTCAGATCGTCGAACTCCGGCCCGAGCAGCTCCGCCAGCATGTCGTAGGGCAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCGCCGGACAGGCGGCTGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //