Array 1 35126-32391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTO010000004.1 Lactobacillus delbrueckii subsp. lactis strain NCIMB 8964 NCIMB8964-i1-1_scf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 35125 33 100.0 38 ................................. AATCGGCCTGCAGGAGGGCGTTTTGGCCAGTTGACCCG 35054 33 100.0 33 ................................. AATCCGTCGCGCTTGATTACTAAGTCAACCGCT 34988 33 100.0 34 ................................. TGGCTACCACCGGCCTTAGGAAAGGCGAAGCACT 34921 33 100.0 35 ................................. CGGACTTGGCCCTTAATTAACTCCTCTGCGCTACC 34853 33 100.0 34 ................................. ATCGGGTCATTTGCACCGTAAAAGTAAAAAGCTG 34786 33 100.0 33 ................................. TTAACCTCATCGACAAACTGGTCGTGCGTCCGG 34720 33 100.0 33 ................................. ACGGTCAAGGTCTACGGCCCTGAAGCGAGGGTT 34654 33 100.0 33 ................................. TGTAGAAAGCAAAAAGTGGATACTTTAAGCCAG 34588 33 100.0 36 ................................. AGAATTAGAGCCAAAGTTGGTCTGCATCTCTGCCCC 34519 33 100.0 35 ................................. TTTAAAGACATGGTCACCCAGGCAACTGAATCCTT 34451 33 100.0 33 ................................. ACAGTGTCCTCCGGATCACCCCCACAGAAGTGA 34385 33 100.0 34 ................................. TGAGCTCTAACCCCGTTTCCAGCTCTACGTAGAG 34318 33 100.0 34 ................................. CCAGCAGACCAAGGAAATCTTTAACTCAGTTGGC 34251 33 100.0 38 ................................. ATTTACCGCCCAAACAGCCAACTTGCCAATTACATCAA 34180 33 100.0 38 ................................. AATCACCCCTTAATGAAGTAGACACCGGACTTGTCAGC 34109 33 100.0 35 ................................. ACTGTCACACCGATCGACTGGGGTTACTGGGGTGA 34041 33 100.0 35 ................................. TTCCAGGCCCCGTAAGCAAGCCTTAGTTCGGGCTT 33973 33 100.0 35 ................................. CATAACCGTGTTTCCACTGCTTAGACTCTCGCCTA 33905 33 100.0 35 ................................. ATGTCAGTGATGTATTTAGCATGATTGACCGTTAC 33837 33 100.0 35 ................................. AAACTTTACTCCAGGATTATGACCTGGAATGCGAC 33769 33 100.0 38 ................................. ACATGAAACAAATATGTCTGGTCAAAAAGCAGAACCAG 33698 33 100.0 33 ................................. TGGCATGTCCATTGGGGTTGGAACCAAGGAGAA 33632 33 100.0 33 ................................. TCTACCTGGGTGATGTAGGAAGATCTGGTTTGA 33566 33 100.0 35 ................................. AACATCAAAAACGGCAGAAATGTAAAAGTTCCGGT 33498 33 100.0 34 ................................. TCTTGCTCGGTGCGGCTGTCCTGGTCGTAGCTGT 33431 33 100.0 37 ................................. CAAACGTAAGCAGCATTGTCTGAAAAGTAGAGGTCGC 33361 33 100.0 34 ................................. GGCTACGGCGACACGGAAGACGCGTCACAGCCTG 33294 33 100.0 33 ................................. TGTGGATCCTTAGCGCCATCTACCTGAATAGCG 33228 33 100.0 33 ................................. TTTACCACCGTCACGCTTTTCTTGACCTTTTTG 33162 33 100.0 36 ................................. AACTACTACTACCAGCACCCAAACAAAAGACTTTTT 33093 33 100.0 36 ................................. AACTACTACTACCAGCACCCAAACAAAAGACTTTTT 33024 33 100.0 33 ................................. CATGCCGCGAGCTCAGCCTTTGAGGACTCACGT 32958 33 100.0 33 ................................. TGCTGCTCCAGGCTGAGACGCGTCTTCCGTGTC 32892 33 97.0 33 ....................T............ AGTTAAACAAACAGCCGACAGCCTCAACGCCTA 32826 33 100.0 38 ................................. GTTCTCCGTAGCCTGGCAAGGTGCCCAAGAATCTGTCC 32755 33 100.0 33 ................................. GTCTTTCTTTGTTGGGACGTGCAATTTGGTGAT 32689 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 32622 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 32556 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 32490 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 32423 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ====================================== ================== 41 33 99.3 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTAACTAAATGTTGCG # Right flank : ATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTCGCGGGGTGCTTTTTAATATTTTGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGTCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACATATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGTTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //