Array 1 179-634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQY010000080.1 Nocardia farcinica strain N-1 NODE_89_length_741_cov_35.944625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179 29 100.0 32 ............................. TCGCTCGGGCACCTCGGCCTGCGCGGGGATCC 240 29 100.0 32 ............................. ACCGCCACCAATGGCGAGGAATCCGACTGGAA 301 29 100.0 32 ............................. TCATGGTCGTGATGGCACTCGTCACCACCGCC 362 29 100.0 32 ............................. TCGGACGGTCAGACCGTATCGGTGGAAGAAAT 423 29 100.0 32 ............................. GGCCCGAGGAACTGGCCGCTTGCCGTCTTCGC 484 29 96.6 32 ............................A AATGTCACGGCACTCGACACCTTCGTGCCAGC 545 29 100.0 32 ............................. AATGCCGGAGATAACCATGATTGACATTGTGG 606 28 75.9 0 ..........TCA....C...-...AT.. | T [615] ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GGGATTCCTACCGGACCCGGCAACGCCGCGAACTCCTCGCCAAGGACCGCGCCGCCGCCGAATAGACCGGCGGAGGGGGTCAACTTCCAGGATTTGCCCGGGGGTCAGAATCAACGAGTTGTTGACAAAAGTGAATGAAAACCGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGTG # Right flank : TGACCCGCTTGGTCCGGTTGAAAACTGACCCACCCTTGGTGGGTGGGTTAGTCGTTGGTCTTGGCCGCGGGGACGCGGCCGAGGTCTCGGTCTTTGAGGCGGTAGCT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 117078-117290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQY010000009.1 Nocardia farcinica strain N-1 NODE_9_length_225257_cov_60.180474, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117078 29 96.6 32 ..............T.............. GTGGACGGCCAGTTCTGACAAGTCGTTCTGAT 117139 29 100.0 32 ............................. CGTCGGCTGCTCCTTCCGGGCGAAAAGGATGA 117200 29 100.0 33 ............................. GCAGTCCTCTCAGCCTGTCGAAACAGCTCCCAG 117262 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 99.2 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGAGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCCGGCACGTGGGACGTAGTCGGTCTCTCACGCGCCCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCCGTCCTGCCCCTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGGCTGGGGCGCCGCTTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTCCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 951-381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQY010000010.1 Nocardia farcinica strain N-1 NODE_10_length_221479_cov_57.241728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 950 28 100.0 33 ............................ CGCCGACTGTTCCTGTCTGGCCGCCTTCTCCAA 889 28 100.0 33 ............................ CGGGTGTCTACAAGAGGCGCAGACACCCGAAAC 828 28 100.0 33 ............................ CGCGCACCCAATTTGCGCGTGAATCGAGTGGAT 767 28 100.0 33 ............................ CGGGTCGAAGCTTCGTGACGTTCTCAAGGAACT 706 28 100.0 33 ............................ CGAACTCGGCACGGTCGGCCTTGTGGTCGGGCA 645 28 100.0 33 ............................ CTCCTCTTGCACGCGGCGCTGGAACACCGTGAT 584 28 100.0 33 ............................ CGGTGGATTGGGGGCGTGTGTCCACGCGTCCTC 523 28 96.4 33 ...........A................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 462 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [409] 408 27 85.7 0 ........A.T....A....-....... | A [398] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : ACATGATGCGAAGAGCGCGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGGCTGTGTTTCCACGTTCCGAGAGTGCTATTACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGGCGAGTCCTTAACTGCATGCGTGTCCGAGCGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACCAACGTTTGTGGCAACTTATCGGGCAGGGCCTGGTCGATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGGTTTCGGCTGAGAAACTGCAGGTCAGGAAGT # Right flank : CGCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGAGCGCGCGCCGTAAGGCACGTTGCACCAGCGACCGCGTGGCGAAAAATGGTTCAGCGGTCAGCGTGCACCTGCTGGTATTCGGCCAGGTCGGCCATTAGTGGACCATCACAAGCTAGGTGCTTAGCTTGTTCAGGGGTGGCGTGCACGCGATGCACGTCCAGGCTCGCGAGTAGGAACGAGGCCTACGACCGTGAACGGGTCAACAGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3761-3184 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQY010000010.1 Nocardia farcinica strain N-1 NODE_10_length_221479_cov_57.241728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3760 29 100.0 32 ............................. CCTGCTGTGGTCGACAATTTGCCTGGAGCATG 3699 29 100.0 32 ............................. CGGTATCTCGCGTCGGCCATCCCTGAATCCGA 3638 29 100.0 32 ............................. ATAATGGTCTCCTGTTCTCCTGGTCGGATTCA 3577 29 100.0 32 ............................. ACGGTCGCCATGTCGCTCTGGTGGATGGACCA 3516 29 96.6 32 ...T......................... GGCGGCGAGCACCCGATCCGCCTCGGTGACGA 3455 29 93.1 32 .C.T......................... CGGCAGCAGCGAGCATCGGCCTCCCACGGCCT 3394 29 100.0 32 ............................. CGACCGGTCGGAATCGTCGCGCACCCTCACGC 3333 29 96.6 32 .................A........... GTCCTGGAATGGGGCGGCGCGGTCCGGCAGGC 3272 29 100.0 32 ............................. ACCACCGTCGCGATCAACACCTCCGGTGAAAC 3211 28 79.3 0 ...T.....-.A..G...........G.T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 GTGCTCCCCGCGCATGCGGGGATGAGCCC # Left flank : ATGTTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTTTGTTTTTTCTTGGGCCTTGTTCACCCCGACGACATGCCCGTCGTCACGGCGGACGGGATGCCGGAATACCGGCGCCGCCTGGCCCTGGGCTCATCTGAATGTCACCATGCGTGTCGCTCGCTAAGGTTGGGGCACCGTTTGGGCAGGGAGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTGGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAGGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCAGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGCAAGCCAATTGCACGCGTCCACCTGTCCCAACGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGGGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1068341-1067397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQY010000001.1 Nocardia farcinica strain N-1 NODE_1_length_1195714_cov_53.792662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1068340 29 100.0 32 ............................. CCGCGATCGATCGCGCGCGCGAGGCGGTGGAC 1068279 29 96.6 34 ............................G GCGAGCCCGTTCGGCGACTAGATCGCCAAGAAGT 1068216 29 100.0 32 ............................. CCCGAGGACACGCCCCGCCCGGCGCTGTCCAG 1068155 29 100.0 32 ............................. GTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 1068094 29 100.0 32 ............................. TCCTCCACCTGCAGGTCGGTGAGGCTGCGTTT 1068033 29 96.6 32 ............................G CCGAAGTGCAGCAGTATTTTTCAAGTCTGCTG 1067972 29 100.0 32 ............................. TACGACGACTGGTTGAAGGTCACCCCGCGTGA 1067911 29 100.0 32 ............................. GCCTACGGTTCGTGGGACGACGGCAAGAAGTT 1067850 29 100.0 32 ............................. GAGAAGCACCCATGTACAGCGTACGAACTTGC 1067789 29 100.0 32 ............................. GTCGGCACCGCCACGATCACCGCCACCCTCGG 1067728 29 100.0 32 ............................. GCTGCGCCGCCCCTGTCCCGACCACGGCCGAG 1067667 29 100.0 32 ............................. CGGATCGCCAAGGGCGTGAAGGTGTGCGACGA 1067606 29 96.6 32 ..............T.............. TGGACCAGCCTCAGCCGTGTCGAATCGGCGTA 1067545 29 96.6 32 ..............T.............. GACGGTCGCTCACCTGGTAGCTGACCGTCTGC 1067484 29 93.1 32 ..............T...........T.. GACGACAACAACCTATGGGTGCTGTGCGACAG 1067423 27 93.1 0 .............--.............. | ========== ====== ====== ====== ============================= ================================== ================== 16 29 98.3 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCGATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCCTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACCGGGGTAGTGGGCTGAGAACATGCAGGTCAGTAAGTGT # Right flank : GCGACTTGGTCGCGTTCGGGCTGGGCAAGGTCGTACCCCGCGCACGCGGAACCGCCTTCTTCGGTCGGGCAGCAACCGCACCAACCGCCCGGTGGGGTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCGTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTGAACCTCCCAGTCGAAGGCCGCGCGGCGCCGCCCCTTCGCATTCCTAGACGTCGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1186002-1185481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQY010000001.1 Nocardia farcinica strain N-1 NODE_1_length_1195714_cov_53.792662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1186001 28 100.0 33 ............................ CTCGAATTCGACCGATTCGGCGATGACGTAATG 1185940 28 100.0 33 ............................ CCCCAACTTCTTGGCCACCCGGTTCCAGATGTC 1185879 28 100.0 33 ............................ GGCGTCGGCGAGGGAGTAGGCGGTGTGGGCGGC 1185818 28 100.0 33 ............................ CTCGCCAAGATCGAGATGATCTCGGCGAAGTCG 1185757 28 100.0 34 ............................ CGCGCGACCGGTGCAAGAACGCCTCACCGCGCAG 1185695 28 96.4 33 .................A.......... CCACACCCCCCGCCCGGTCGGTTACCTATAGTC 1185634 28 100.0 33 ............................ CGTGCTGGAATCTCAGATTCTCGGCGAATCGAC 1185573 28 100.0 33 ............................ CCACGTGCCCGGCCCGACCGAGTCATACCTTCT GA [1185546] 1185510 28 89.3 0 .........C..T........G...... | T,G [1185486,1185502] ========== ====== ====== ====== ============================ ================================== ================== 9 28 98.4 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTTCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAAGACGGCCGCACCATCATGATCCACTCCACGAAAGGAGAACAGCGCCACGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCGGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGGTAGGAATCGTGCAGGTCAGGAAGT # Right flank : CCGAAGCTAGTCGCCCGTGAGCGGGGCCGACGCCCGAAACGAGCACTCGCTCGAAGACTGTCGCGCCCCGAGGCGATACGTTGTCGTCCACAACCGGCGGCGGCGAGACGCGAAAGGTCTTCGTTCATGCGGACTGCTGACTGGGCCGTGGGTCACCGCGAGCGGGGATTCTGTCAGATGGGTCCGGTCGCAGCCCCGCGCGCAAAGGCCGGCGTGAGGGTTGCGCGCCGACCTACACCCGGCTCGCGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCCCGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTGGTTCTTCCCGGCCTGGGTGCGGCGTTCTCGGCGCCCGGTCTCCCGGTCGAGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1195594-1195184 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQY010000001.1 Nocardia farcinica strain N-1 NODE_1_length_1195714_cov_53.792662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 1195593 29 96.6 32 .C........................... GCCGGCGACGCCCACCACACCCAGTACGACCT A,A [1195588,1195590] 1195530 29 100.0 32 ............................. GCGCGCCGAGATCAGCCGTACTTCCACGAGAT 1195469 29 100.0 32 ............................. GAAACAGCCACTGCGCCTCCTAGAAGATCAGC 1195408 29 100.0 32 ............................. CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 1195347 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTAACAGCGGTACCA 1195286 29 96.6 46 .........................C... CCATCTGCTTGTAGGAGGACCGTCGCTTCGGTGCGCCGAGCTCGAC 1195211 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= ============================================== ================== 7 29 95.1 34 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ATGCCCTCGGCGCGATGCAACCGACGGATCTCCGCCCAGTCCTCCACGTTGAGCACCTCATGATCGTTCACAGGGTGGGTCAGAATTCACCCGGAACCAGAGGGTCAGTATTCAGCCGGA # Right flank : GGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCGCACGAGGGCGACCCCTCGGCTGGTAACGCCACCCCGCCGCGTGTGCCCCACGCGTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTACCGCTTGCTACCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGACCGCGAGCGTGGAAGCCTTTCTCTCGTAAGGCATCTCGCTGATTCGGGTGAGGTCGCGAAGTTGGTCTGGGACCGGTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTTGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //