Array 1 2773-96 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYV010000001.1 Bifidobacterium bifidum strain BSD2780061687_150420_D1 NODE_1_length_801996_cov_72.8533, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2772 36 100.0 30 .................................... TCCAGTTCTGTTCGATGCCGTCGATGCGTA 2706 36 100.0 30 .................................... ACGAAATGCGTCTTCTAGCCGGTTTTTATT 2640 36 100.0 30 .................................... AGTATTGAGCTTCGCGCCGGGGGCTGTTTT 2574 36 100.0 30 .................................... CGTTATTGATACATTAATATATTAAAAAGT 2508 36 100.0 30 .................................... GCATAAGATCGGCATGGCGGGCGTAGACTA 2442 36 100.0 30 .................................... TTTTCCTTTCATATATGAAAAAAGTCGTAC 2376 36 100.0 30 .................................... TATCATAGATACCGTCTATGCGTTTGTTCA 2310 36 100.0 30 .................................... GTCGCCGCGCCGCTGACCGCGTTCATGGTC 2244 36 100.0 30 .................................... ACCGCCGCAGCCAAGTAATATAAGGCATCG 2178 36 100.0 30 .................................... AATAAACACGGTGTACGTGAGGTGCCATAG 2112 36 100.0 30 .................................... ATTTGGGAGCTTGATTCTGCCGTGATTTGA 2046 36 100.0 30 .................................... TATACGCCTTACCATGCTCGATCACCATAC 1980 36 100.0 30 .................................... TCAGTGGTTAGAGCGGCATCCTTATAAGAT 1914 36 100.0 30 .................................... TGCTTGTGACGGATGAGATGGCGTTTGTTT 1848 36 100.0 30 .................................... TGATTGACGCGTGCGCCGAACACACCGAGT 1782 36 100.0 30 .................................... AAAAAAACACATGTTCCCACTACCCTTATA 1716 36 100.0 30 .................................... CGGCATGTACGGCATGTCCTCCACCATGCA 1650 36 100.0 30 .................................... ACGTAACCGGTAAATACATTAATGATCTGT 1584 36 100.0 30 .................................... TTGAAAATATTAAAAGAGCGTCGCCGTTCC 1518 36 100.0 30 .................................... CGTACGTGGCGGAGTTCGGCGCGACATCAA 1452 36 100.0 30 .................................... GTCCGCCAGAATGGTGGTGTACAATAGTTT 1386 36 100.0 30 .................................... GCTGACTCCGAGCCGTGTGGCGATAGCGGA 1320 36 100.0 30 .................................... CAGTATCCAATATCGTGGACGGATGACGAA 1254 36 100.0 30 .................................... GGGCATTGTATCGAGTGGACACGAATTTCA 1188 36 100.0 30 .................................... GAATTTTGCGAAAAAGCGCCCGAAGACACC 1122 36 100.0 31 .................................... TTGCGAAACTTGTCGATACCGTGACACGTGA 1055 36 100.0 30 .................................... TAGGCACGATGCCTTTGCCAATATATCTGC 989 36 100.0 30 .................................... TGGCGGTGGAGCAACCCGCTCAGCGTTTTT 923 36 100.0 30 .................................... CTGCCTTATCCAGCTGAAACACCGAGGACA 857 36 100.0 30 .................................... CCGCGCGTAGAACAGTTCTTCATTGGTCAA 791 36 100.0 30 .................................... ATGGAGCGAATGCCAGCAACAGTGCTGTGA 725 36 100.0 30 .................................... TCGCATAGGCGTTAGCTTGCGAAGTGGCCG 659 36 100.0 30 .................................... GTAGATGGATTGCGTAAATGCCGCATAAAT 593 36 100.0 30 .................................... CTGCTGGGCTCCCGTTACGGTGAGGTGATG 527 36 100.0 30 .................................... CATGCCGAAGTTCTGTAGCTGGCTGCCCAC 461 36 100.0 30 .................................... TACACGATGCGCACACGCGCTGGTCATGTG 395 36 100.0 30 .................................... CGCCGCCGATGGATTGTTCGAGGTTCGCGG 329 36 100.0 30 .................................... AAGCAAACGGCTCCATCGTCATCTTATGTA 263 36 100.0 30 .................................... CGGAGCCAGTACGGTACGTGCTGATATGAC 197 36 100.0 30 .................................... CGTCTTTAGCCGCGGAACCGGTGGAAACGC 131 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 41 36 100.0 30 GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Left flank : ATTGCGCGGATGAAGTGGATTATAATGCTTTGTTCCAGAAGCTTGCTGTCAAGAAAATAATCGAAGGATTTACGCCGGAGCAAATCAGTAGATTATTGTCTTTGCAGGCTGAGTTAAAAACAATTATTCAAGATGAGATATGGGGTCAAAATCTACCTCTGACTATTCCCTGCGATTTGGATTTGAAAGCAGCAATTGCAATGGCCAAACCTCGGATTGACACGAGTTCTTTGGGATCCTTGTATGATAAAATTTCGACGGCAGTAGATACTGCCGGTGCTCTTGCCGAGAGCAGGATGCTGGTGACGCTTCATACAACTCAATACTGTGATAACGACCAATTACTTTATCTGCACCGTACTTTATTGCGGTACCAGTTGCAGCTTCTTGACCTGGAATGCTGCAGCAAGAAAGTCATGCTGACAGAGGGGATGAGCCACTATGTCGATGAGGATTACGTTCAGTTCTCATGAACTGTTCAGGAATCCTTAAGGCTATCG # Right flank : CTGCTTGACAGGTACAACGTGATAGGCGTGTGTTTCAGATGTGAATATTCGTAGCTTTTGAGGCCACTGGTTATTGTGTTTGGAGGCCGGGGTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAATGACTTTGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 99489-100448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYV010000005.1 Bifidobacterium bifidum strain BSD2780061687_150420_D1 NODE_5_length_100497_cov_78.0946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 99489 36 97.2 30 T................................... ATATCTAACCACGAATATAGTTAGACATGA 99555 36 100.0 30 .................................... CCAGCAGGCCAAGTTAAGCGGCGTGAGTTT 99621 36 100.0 31 .................................... AACCATAGGGGGTTACTGTGCCACAATAAAA 99688 36 100.0 30 .................................... CAAAACACAACCGCGCAGACGTTCCAATGT 99754 36 100.0 30 .................................... CGTGTTGGTTTGACATGTGGTGTGTGTTGT 99820 36 100.0 30 .................................... GGTACATACGGAATGGGTCAGCAAGCATCA 99886 36 100.0 28 .................................... TGTTGTTCCTTTCGTGGGGGGGGGGATG 99950 36 100.0 30 .................................... ACAGGTGCACGTGGTTCCGCACGTCTGGGA 100016 36 100.0 30 .................................... TCGAAGCATCCTTCAAGGAAGGAGAGCGAA 100082 36 100.0 30 .................................... TACGGGCATGTGACGTAGTAGGTGCCGACG 100148 36 100.0 30 .................................... CATCTACACACGAGCACTCGGCAGCGAGGC 100214 36 100.0 30 .................................... CTATATCCCGAGGGCTGCCTGGCCGATTGT 100280 36 100.0 30 .................................... ACCAGAGCGGACATGTGCGGAGCAGACCTG 100346 36 100.0 30 .................................... GCGTCAACGAGTGAGAAATCGGAATCAACA 100412 36 94.4 0 ..................................TA | T [100442] ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.4 30 GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Left flank : TGGGAAGCTTCCCGGACGGGAACGGCGCGCTCATGCTCGTCTGTGCGCGCATCAGGTACGTCACCGCGAACGAATGGTCCAACCGGCGTTACCTCGACATGTCCCGGCTCGGTGACAATCTGCAGGAAGCGAACCGGTCATCGCGCCATGGGCGGGCATGATCCAAAGTGCGCAACCTTTCGGGCACTACCTCCCAAAACCTCCACTGAACGGAAAAATCAAGCCACAACAGACACTGTCAAACAGGCTTACACACCTTGAAGCATGAAAAAAGCCATCAGGGACTTCCTGATGGCTGGTCATTTGCGGTATGCGCTCCACTTATTCCTTGGGCATCGGCCTGAGGCCGCCAACGACAGCGCTCTTCACATAGGATGTCACTATAACAGTCCGAATATTGTGCATCAATCGTTTCCCATATGTCACCAGAATCAAAAGCACACCCCGGAAGCTATCCAGAAGACAGCAACAGAGGTGCCCCTAACACTATTGCGCATCAC # Right flank : TTTGACTCGTTGGGGTCCGGGGTTATTGCGTTTGGGGGCCATTATGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCAAAGTCATTGATCTGACAGGCATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //