Array 1 26472-26264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQAA010000045.1 Acinetobacter baumannii strain SQ017 contig_45_len_26561:location=plasmid, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26471 28 100.0 32 ............................ TGTGATTTCCTCAAATTGAGTTAATGAGATAG 26411 28 100.0 32 ............................ AATCTCATTATCAATCATGCTAATAATGCCCT 26351 28 100.0 32 ............................ AATGCAGACAAAGCGTTAGGTGAGCGCATTGA 26291 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : TATGATAAGATTAACCCGTTAGGTCAGGTGGCTTAACTTAAATAAAAAAGTCTCCGACAAACCCGGTACGGTTCAGTCTGGTGATGCTG # Right flank : AACTGTAGCAGCTTGCTACATATTTAATTTGTTTCATGGTGATGTATGCAGATCTTAATATGTAAAAGGCGAAGGGTAGATCACCAAAGATTATTGAATTGATATGCTTTTAGTCCTAATAAATTAAGCAATTTTTATCGAATGTTGGTAGAGCTTTTATAATTGATTTTAAAAATGCCCATACTATAAAAAAACAAGAGCACGAGGCTCTTGTTGTTTACTGATTGGAATTAATGGTTATAAGCACTTTCATTGTGGTCAGTTTTATCAAGCCCCACTTGTTCTTGTTCTTCATCTGCACGTAGTGGCATGACTAGACCGACGATTTTGAATAGAATCCAAGACAAGACACCCACATATAAGAAGGTAAATAGAATACTTGCAATTTGAGCAAGGACTTGAGGCACAATCGAAATACCTTCGACATTACCACCCAGTGCAGGAACACAGAAAATACCAGTTAAGATACAGCCGACAATGCCGCCTACGCCGTGTACAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4223-3716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQAA010000017.1 Acinetobacter baumannii strain SQ017 contig_17_len_74802:location=chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 4222 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 4168 28 85.7 29 ...T.G.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT C [4160] 4110 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [4092] 4043 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 3983 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 3923 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 3863 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 3803 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 3743 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : ACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9779-14368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQAA010000017.1 Acinetobacter baumannii strain SQ017 contig_17_len_74802:location=chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9779 29 96.6 31 ............................T AAAAGGCTGTGCCGACGAGCAATACGCCAAC 9839 29 100.0 31 ............................. CTTTGTCATTGAAGTCAGTAGATAATGACTC 9899 29 100.0 31 ............................. TTAGATTTCCAGCAGCAGCCCCAACATAACG 9959 29 96.6 31 ............................T AACATGCACGGTCTGTTTTACTTGCTTTCAA 10019 29 96.6 31 ............................T GCATTGATTGGCTCTGAATCAGATCTAATTG 10079 29 96.6 31 ............................T CTTTCCAGTTGGGTTATTTACCCCATTAATC 10139 29 96.6 31 ............................C GATTCAGTTAAGCGAGGCGCAGAAGTCACAA 10199 29 96.6 31 ............................C ATCACATCAACAAGAATTAACTCTTTAAAGA 10259 29 96.6 31 ............................T CTTTAATGAGGGTTTTTAATTTTTAATCTAA 10319 29 96.6 31 ............................T CTAAACCTGTGGATAAATAGCGCATTACGCC 10379 29 100.0 31 ............................. CGTTGACCAACATAGGTTACTGTGCCGCCCA 10439 29 100.0 31 ............................. GATGAGCCACAAGCGCCATATGTGACATGGC 10499 29 100.0 31 ............................. GACTCTTGAAGAATCAAGGCTGCTAATGTTC 10559 29 96.6 31 ............................T GAAAATGATGAATATAATTACGCCCCACTAA 10619 29 96.6 31 ............................C CAGACGTTTTGTGCTGCAATCGCATCAAACT 10679 29 96.6 31 ............................G CAATAACATCCCTTGTTGAAAGGTCGGTAAC 10739 29 96.6 31 ............................T TGAATATGAAGCAGTAATTGAATGTGAAAAA 10799 29 100.0 31 ............................. GAAACATCAGTTATTTTTATTGATGAGGTAC 10859 29 100.0 31 ............................. CAAGTGCCCGTAGGGCTAGGAGGAGCAGCAC 10919 29 96.6 31 ............................C AAGTCAATTTATCGGATAAAGCAGAAATAGC 10979 29 96.6 31 ............................G AAGAAGGTTGAACCATCAGGTGGATCGAATC 11039 29 100.0 31 ............................. CAACATCAATCCATATATAACCGTTGACCTC 11099 29 100.0 31 ............................. GAAACCGTATTGATTGCGAACAACTTCAGCG 11159 29 96.6 31 ............................C GTTTGAACACACATGAAGTCGCAATAACAAA 11219 29 96.6 31 ............................T CTGCCTGCTAGTAGCTTTTTAGCTCTGGTCC 11279 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 11339 29 100.0 31 ............................. AATCAGTTTTAAGGTGTAACTGGTGCAATCA 11399 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 11459 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 11519 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 11579 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 11639 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 11699 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 11759 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 11819 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 11879 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 11939 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 11999 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 12059 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 12119 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 12179 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 12239 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 12299 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 12359 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 12419 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 12479 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 12539 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 12599 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 12659 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 12719 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 12779 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 12839 29 100.0 31 ............................. GAAGTAGGAATCAATGTGAATGAATAACCAA 12899 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 12959 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 13019 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 13079 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 13139 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 13199 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 13259 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 13319 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 13379 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 13439 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 13499 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 13559 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 13619 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 13679 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 13739 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 13799 29 96.6 31 ............................T GAAAAACGTAACGCAGAACTACAAGCTGTTA 13859 29 96.6 31 ............................T TCCAATTCGCATAATGAGCACTGATGTTAAA 13919 29 100.0 31 ............................. AACGGTAAAGTCATTCCATTTGTACGTTTAT 13979 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 14039 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 14099 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 14159 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 14219 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 14280 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 14340 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 77 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATATTAATTAATTTTTATAAAAAAATCCCAGTGTACATAATAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACGGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCTTTGTTTTCAAAGGTTTATCCAGAATTGGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTAGCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACGTGGAATTGTTTTTTAACTTTTGCCAGTGATGAAGCTTAATAGACATGTTTCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17012-12178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQAA010000026.1 Acinetobacter baumannii strain SQ017 contig_26_len_51371:location=chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 17011 30 96.7 30 ............................A. ACGATTCATTTTCAGTCATGCCTTCCCCCT 16951 30 93.3 30 ............................GA AATCAACAAGCGTATCTAAATCATTTAGGT 16891 30 93.3 30 ............................AA CTGCACGACCTGCTCATTAGTAAGCACAGG 16831 30 93.3 30 ............................CA GCCAATAAAGAAGATCGGGAACTAGCGCAT 16771 30 96.7 30 .............................A TCAAAGTATTTACGACAACAAGTTAAAAAC 16711 30 96.7 30 .............................C AATGCATTAACATCGGCATCTAAAGTTGGG 16651 30 100.0 30 .............................. GTCAGCGGGCTTTTAGCAAAAATTGGTATT 16591 30 93.3 30 ............................AA TGAAGCTGATGCGGAAACATTAATTAAAAA 16531 30 96.7 31 ............................G. TGTATCATTCACAGGTAAATTAAAGGTTTTA 16470 30 96.7 30 ............................G. TGTGCTGGTCTATATGACGACTGGATTACT 16410 30 96.7 30 .............................G CTCAGCCTTAGATTTAGCTGATGATTTAGA 16350 30 96.7 30 .............................A TCCTCATACAAATGCCGTTGATCGTTGTTG 16290 30 93.3 30 ............................AA TAAAAAGTTATTCAAAAATACGGCCTTTCC 16230 30 100.0 30 .............................. GTTGAAAAGGTTAAATGGACTGAAGAACTA 16170 30 100.0 30 .............................. CTGAACTCAAAGCAGATATGGGGGATTGGT 16110 30 96.7 30 ............................A. TTCTTAGTGATGCAGCACGTAATGTGTACG 16050 30 93.3 30 ............................AG TGAGGATTCACACCTAGAAACTGGGCAGCT 15990 30 96.7 30 .............................G CTGCTTGAACAACATGAATTGCCCATTCAG 15930 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 15870 30 93.3 30 ............................AG AAGCGTCATGAATATTTGGTTTGGCTTGAA 15810 30 96.7 30 .............................G ATCATTAGTGCCTCTTCGGAAATCAACTTT 15750 30 96.7 30 .............................G AAAATAATTAAATGGTCTATCACCGTCTTC 15690 30 93.3 30 ............................AA TAAACAGCATTTCATCAGTTGCGTAATAAA 15630 30 96.7 30 .............................C CAAAAGAGCAAGCAGAATTTAGTGCATGTA 15570 30 93.3 31 ............................CA CCAACCGACAATGTAGCATCGGCAACTAAAC 15509 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 15449 30 96.7 30 .............................G ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 15389 30 96.7 30 .............................G CTACAGATATAACTAATCAGTTAAATAACT 15329 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 15269 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 15209 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 15149 30 100.0 30 .............................. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 15089 30 100.0 30 .............................. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 15029 30 96.7 30 .............................G ATTCAGTAGGTGCTAACTGGTATAACTTGA 14969 30 93.3 30 ............................CG TTGTTGGGTCTTGGTTGCGTAGTGGCCCCC 14909 30 100.0 31 .............................. ACTAGCCCATATGTCTAAACCGAATCCACGC 14848 30 96.7 30 .............................A AACCATTATTAGGGTTTACGGTATTACTTG 14788 30 93.3 30 ............................AG TCCATAAGACCCTCCATTTGTTTATATCTT 14728 30 93.3 30 ............................AG AAGGGTATAGCAAATATCGTGATGGAAATG 14668 30 96.7 30 ............................A. CATCGCCAGCAACAAACTGCAATGAGCCAG 14608 30 100.0 30 .............................. GGTGTGATCATCAATACAGATGGGACAGGT 14548 30 93.3 30 ............................CG ATAGAAGATACAGAAGAAAATAATGCTATT 14488 30 96.7 30 ............................G. CAACCAAAGAACCCCAAGCAAATCGAGCAA 14428 30 96.7 30 ............................A. TATCTAAGCGTCCCATTAGAAAACCTTTAT 14368 30 100.0 30 .............................. TCAGATGAAACCATACGCACTAAATGCATT 14308 30 96.7 30 ............................A. GTAATCTTGGTATGGGAGGTGTAAAGCCAG 14248 30 96.7 30 .............................G TTGACCCATCTATTGATGCATCTGTAAATA 14188 30 93.3 30 ............................CG ACTGCTCCTAAAGCTCCGCCGACTGACATT 14128 30 96.7 30 ............................A. GTGAACATGCATGCATTGATGCAATATGCG 14068 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 14008 30 100.0 30 .............................. TTTCACCTGATGGATGCTGTATTAAATCGC 13948 30 100.0 30 .............................. GGAGTCATCAATAAGAAACAATCCATTTAA 13888 30 100.0 30 .............................. CTGGATCTATTCCAAAGTGTTTGCAAATTT 13828 30 96.7 30 ............................A. CTAATCGATGGTGAAGATTTTGAACAAGAT 13768 30 96.7 30 ............................G. TATCTCAATGGTGTGACTTGTTAGCACTAG 13708 30 100.0 30 .............................. AATGCAATTCGGAGCATGGCGTACCGAAGA 13648 30 100.0 30 .............................. GTGTGGACTCCTCAATCAGCATCTTGAAAT 13588 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 13528 30 96.7 30 ............................A. GACGGTTAGTTACTTTTGATGTACCGCCAC 13468 30 93.3 30 ............................AC TAACTCACCGCGATAAATAGACGCGATACC 13408 30 93.3 30 ............................AG AGACACAGAAAAAGAATGTGAACAATGGGC 13348 30 96.7 30 ............................G. CGATTAAATCAGTCAAAGGACCCTAAGCCA 13288 30 96.7 30 .............................C AAACTCACAACCTAGAAAAGATTGCTAAGG 13228 30 96.7 30 ............................A. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 13168 30 93.3 31 ............................AC CAAAAGCTTTACGGTAAGACACGTTATGCAG 13107 30 96.7 30 .............................A CGAAAACAAAAGATACTCATGCACCAGAGA 13047 30 90.0 30 ...............T............AA CAGCATTTACACCAGCAACCTTTAAAGCAG 12987 30 96.7 30 .............................G TTACATGCCCAATTGGTTGGCGCATGTCAT 12927 30 100.0 30 .............................. CTAAGCGAAGGCTAACGCTCACATTCAAAA 12867 30 96.7 30 .............................G TAAAACCGAATCCCAAGCTGAATAGGTTTT 12807 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 12747 30 100.0 30 .............................. GTTGCGGCTCTCGCATGATGTGGTTTGATC 12687 30 93.3 30 ............................AA CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 12627 30 100.0 30 .............................. GATGCTGAAAACTTCACAGCAGGCAATCCA 12567 30 96.7 30 .............................G TAAAGGATGTGAGGAACGTCGTGAGTGGAT 12507 30 93.3 30 ............................AA CTGACTAGTGATTTGAGGAATGTGCTCACC 12447 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 12387 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 12327 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 12267 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 12207 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 81 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //