Array 1 32888-32321 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVO01000002.1 Pectobacterium versatile strain NY1788A NODE_2_length_142663_cov_13.139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32887 28 100.0 32 ............................ AAAGGGCAATCGATTCTGGGAGGCCCGTAGCA 32827 28 100.0 32 ............................ GATGCAATTTTTCTGACATTACATCAGAGCAG 32767 28 100.0 32 ............................ AACGTGATTCCGTGTTCATCAAACCACATATA 32707 28 100.0 32 ............................ GTCAGTTACACCGCCAGAGGGCTGGCTGGAGT 32647 28 100.0 32 ............................ AGAGAAACGCATTTCTCCCGCGCCAGCCGCGA 32587 28 96.4 32 ...........T................ TTGATTTCGCCGCCGCTTGGCTACCGTCGAGG 32527 28 96.4 32 .............C.............. TGTAACCAGCTTCGCTGGGCTTCCGGCGGGAT 32467 28 96.4 32 ...........T................ AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 32407 28 96.4 32 .............C.............. GCAATTGCTGAAATCGATGCACAAGCGGCTGT 32347 27 78.6 0 ...........T.C...T....-...TG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGTTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCGCAGGCCGCTTCTCTTCTTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCACCCTAATAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGTGTAAAAACTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCCAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCAGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTCAGCGCTGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 41460-45635 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVO01000002.1 Pectobacterium versatile strain NY1788A NODE_2_length_142663_cov_13.139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 41460 28 96.4 32 .............T.............. CAGGCAACAGCTGACGCGATCGCGGGTAGTCA 41520 28 96.4 32 .............T.............. TCGGCGCGTTTGGTTGCCTCTTCTGCGCGAGA 41580 28 96.4 32 .............T.............. GTTGCGGCCTCGGGCCGATGCGTTGGCCAACC 41640 28 96.4 32 .............T.............. CGGTTGATTCAACGATATTCTTATCGCGCTCT 41700 28 96.4 32 .............T.............. AACTGGGAAAAAGACAAAGGTTCAGTCGGTAT 41760 28 100.0 32 ............................ AATGCGTTCTCGTGCCGATCATCGGAGATTCA 41820 28 100.0 32 ............................ GCGCAGCGCAATAGCGACATAATCAAGGGGCG 41880 28 100.0 32 ............................ ACATTCCGTGGTCATGGTGCGGAAGCGAAAAC 41940 28 100.0 32 ............................ TAGAGGATTTGCTGAAGCAGTTTTTAAATTTA 42000 28 100.0 32 ............................ CCGCACCACTGCGGCACATGGGGATTGAGGAT 42060 28 100.0 32 ............................ GCTCGAATGATTCATTCATGCTGCTATCTCCA 42120 28 100.0 32 ............................ TCGCTCTGCAACTGAAGACGCTGGCTGGGAAA 42180 28 100.0 32 ............................ ACGCGCACGGGCTTCACGCTCATGCTCAGGAT 42240 28 100.0 32 ............................ GACACAATTTATCTCGCTCGCGTCTGGAAGGA 42300 28 100.0 32 ............................ CTTAGCATTATTCCGTATTGTGCACCGTGCTC 42360 28 100.0 33 ............................ CTCAGGGAGCGAATCGAAACCATCACAAAGCAA 42421 28 100.0 32 ............................ AAGAAACTGGCATGGAAATTGTCACCGATCTG 42481 28 100.0 32 ............................ GTTCTGCGCTCAATGCCGGACAACTCAGTAGA 42541 28 100.0 32 ............................ TCTACATCATCGACAGCGTACGCGGAAAGTGG 42601 28 100.0 33 ............................ AAAGGATGGACTCGATTACACCCCATCCAACAA 42662 28 100.0 32 ............................ CACATCGACGTGAGCAACCTCCGGCCTGTTGT 42722 28 100.0 32 ............................ TTGTTAGCGATCGGGATATCGGAAATCTCATT 42782 28 100.0 33 ............................ ACGTCACAATCCCCGCGTTGGTTAGCGAAGAAT 42843 28 100.0 32 ............................ GCTGTAGAGAGGGCCGTCAAGGTTCCGATGAC 42903 28 100.0 32 ............................ TGTATTTTTTGAATACGACTTCATCATCTCCA 42963 28 100.0 33 ............................ GTTGTACACACTGAACTCGGCGAAGTTCTTTGT 43024 28 100.0 32 ............................ TCAGAAATCGATTGAGAACTGCCCTGAATCCG 43084 28 100.0 33 ............................ AGAAACGGATTATCTACGGCGGAAAAGGTTGAA 43145 28 100.0 32 ............................ ATGTGCAACGATGATGACGGGATGTTGATTTC 43205 28 100.0 32 ............................ TGTGCGGTGCCAACCTGTGCGATGCCAACCTG 43265 28 100.0 32 ............................ TACATTGGCAGGAGAATTCCCATTCATGTTAA 43325 28 100.0 32 ............................ TGCGCGATGCCGACCTGTTCGGTGCCAACCTG 43385 28 100.0 33 ............................ GACAGGTGGTTTTTTTACGCCTAAATTCAGGAT 43446 28 100.0 32 ............................ TAGCAGCCTTTTTATTGCATCAGATAAATATG 43506 28 100.0 32 ............................ GTCATCAAGTACCACGAATATCAGCAATTTTC 43566 28 100.0 33 ............................ ACTTCCGAAGTGGGCAATGACATCTTGCTTTCG 43627 28 100.0 32 ............................ GTTTCTGATACCGCATGGAAGAAACTGCGCCC 43687 28 100.0 32 ............................ CGACCCCGCTCTCGCTGATATCAATTTTGACC 43747 28 100.0 32 ............................ ACAGCTAATGCAGGGTAAGTGGGCGTCACGTT 43807 28 100.0 32 ............................ TTAAAGAAAAATGGATTGGGATCTGTATAGTT 43867 28 100.0 32 ............................ TCAATTTCAAAACGCCCATCTTGGGTATCAAT 43927 28 100.0 32 ............................ AGGTGAATTACACTCCGGAGGATTACGCAAAA 43987 28 100.0 32 ............................ GTCTGCCACGGGCACACAGGTTCCGATATCAT 44047 28 100.0 32 ............................ TCTGACAGCGCAGCAGAAAACGAGTGTAAAAA 44107 28 100.0 32 ............................ TACGCAGATCAGCAAGAGAAGCGCAAGGCTGA 44167 28 100.0 32 ............................ TGAGCAGGAACAACGGGAAGATTCATGCGCTC 44227 28 100.0 32 ............................ ATTACATCAATCTCCTGTTATCAAATTCATCC 44287 28 100.0 32 ............................ GAGAATGCGTACTCTGCTGCCTACGCCATTGC 44347 28 100.0 32 ............................ AGCATGATTATTGAAAATGTTGAACCTTAAAT 44407 28 100.0 32 ............................ TTGAAGCTCAGCCATCGCACCGCGCGACAACT 44467 28 100.0 32 ............................ GCGAACTGACGGCGGAAGAAATCGACCTGATG 44527 28 100.0 32 ............................ TGAAACCCGTTCTGCAATGTGTCGGGCCTGGG 44587 28 100.0 32 ............................ CGATACGGCCAGCGTTCCCAGCTCAGCACCGC 44647 28 100.0 32 ............................ AGCAAAAAGTCAGACGCTGCCCGCTGCGGTGC 44707 28 100.0 32 ............................ GCGTCTGTTTGTTGGCCGCATGATTTTGGGAT 44767 28 100.0 32 ............................ AGACCGTATCCATGCCCTCAGCGGGCACGTCC 44827 28 100.0 32 ............................ TGAGTATTACGGACAATACCGCCGCCGCACAG 44887 28 100.0 32 ............................ CGGAAGATGAATATAAGCAACACACGGAACTC 44947 28 100.0 32 ............................ TCATCAGAAAATCTCAATGTTAGATCCGCGCC 45007 28 100.0 32 ............................ GCCATCGTTAAATCTGGATTCCCACTGCTGAC 45067 28 100.0 32 ............................ ATCGCACCGCGCAGTAGAGGGTGTGACCACAC 45127 28 100.0 33 ............................ CTCCAGCAGCAAGGCAGGGGGCAAGGCCGGATT 45188 28 100.0 32 ............................ GTTCGCGCAAACAAAGAAACCGCGGGCGTGCT 45248 28 96.4 32 A........................... CAGATCACAGACCAACAATTTAGGCGCAGATA 45308 28 100.0 32 ............................ TTTATGAGATAAGTACAAAATTAAAGTGTTTA 45368 28 100.0 32 ............................ AGCTGGCATATCATACGGGATCGTAACTCAAG 45428 28 100.0 32 ............................ CGTATGTTGTGGGGCAAAAAACGCATTTAGTA 45488 28 100.0 32 ............................ TTACCGACCGACGATGCTGATAGACCGGATGT 45548 28 100.0 32 ............................ AGACAGTAAGGGATGGTAAAAATATAACAATT 45608 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 70 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAGACTCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGTGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCTGGCAACG # Right flank : ACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAAGTAGTACTGCGCCAGCGCTCACCCTCGTTAAATGACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGAGTTTATTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTTTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAACGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGATGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCCTGGAAAACGGCAATATTTGGTTGTACCGACCCCATCTCATCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 51838-51630 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVO01000002.1 Pectobacterium versatile strain NY1788A NODE_2_length_142663_cov_13.139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51837 28 89.3 32 A..T........G............... GGACTCAGTGCGCTGCACACCGAATTTTTTCG 51777 28 100.0 32 ............................ GACGCGTACAGCGACATAAAAGCCAGAATCCT 51717 28 96.4 32 ...........C................ TTTAACTTTTCTTGCGCACAAACTCGTGCCGG 51657 28 75.0 0 A..........A.C......TGA.C... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 90.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTCCTGGTCTTGCGCAGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGCATTCAATATTGGCAGGATTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAGCTGTATGTTTCCATGCTGGTAGGCGCAGGTATGACAGCCATCGGCGTTGTGAAATACCGACACGCTCGGCGCAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTGATCGCGCTTTATCTCGCGCTCCCGCTGCATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGGCAGCAGTTAAGTATCTGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGG # Right flank : ATAAAGCTCACCTAAAATCAGTAATAAAAAACTCATAGTCAACACGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCCGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGTTGGAATGCCTAGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCGT # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //