Array 1 47583-49269 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRZ01000003.1 Paenibacillus thiaminolyticus strain NCTC11027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 47583 32 100.0 35 ................................ CCTTTCGGGAATACGATCCTTCCCCCTGCAGCTGC 47650 32 100.0 33 ................................ GGTCATGTATCTTTTTTCGATGATCAACCTTTC 47715 32 100.0 34 ................................ CTAGTGTTTATGATTACAGTGCGAGGAGGAAGAG 47781 32 100.0 34 ................................ GATCATAACTTCCTGTGCTGTTTGGCTCATTTTG 47847 32 100.0 33 ................................ ATATAAACAACTCGCAAACAAGACCGCGTTGTT 47912 32 100.0 34 ................................ GATAATGATAAAGCCTTGGAGTAATCCGGGGCTT 47978 32 100.0 34 ................................ ATCAACGTGGACATCGGGACCGGCCAAAACCATT 48044 32 100.0 35 ................................ AAGATGGTCGGTTGGAAAAATAAAAGGGGGGTCGG 48111 32 100.0 33 ................................ CTTGCCTTGTTTGTGATAGTAGCCATCCAGCAG 48176 32 100.0 35 ................................ CTGCTTGAAGCTGACATATCCTTTCCCGCAGAGCC 48243 32 100.0 33 ................................ GAAGTATGCCGAACGTTATAAAATTCTCCAGGA 48308 32 100.0 33 ................................ ACTTGAAAGGTATATGGCAGGCTCAGGTAATAA 48373 32 100.0 34 ................................ CGTCAAGAAATAAAAGTGCCGCCCCCGAAGGAGC 48439 32 100.0 34 ................................ TATTACCTTAACTCTGATGCGTTTTTGTATTGCC 48505 32 100.0 33 ................................ ATCCAGAGGTTTAGGCTGTCCGTGATGGCCTGA 48570 32 100.0 35 ................................ GCATCTTCGTTAGGGTGGTCGGCCGGAGCTCCAGC 48637 32 100.0 33 ................................ CCATCCGGACAAACTGGTTATCGAACGGGTTCG 48702 32 100.0 34 ................................ TACGCGGACGGTAGCCGCGCACTGTGGTTCGATG 48768 32 100.0 35 ................................ CCGGGCGTGAGCATCAAACGTGGCGATGGGGCAAT 48835 32 100.0 36 ................................ CTGCGAGGGAGATTGAAATTTGGAGGTGCCAAGCAC 48903 32 100.0 34 ................................ TTGCGATCGTGTGGCTGCTGTTTATTGTCCGTGT 48969 32 96.9 35 ............A................... GGAAATGAATGGAGTGAAGAATATGGACAGTAGAA 49036 32 96.9 37 ............A................... ACCAGCGGTGGCCGGGATGACATCAGCGCAACTCAAA 49105 32 93.8 35 .........C..A................... CCCATAACCCAATGCCATTTGCCGTGCTTCGTCTT 49172 32 93.8 34 ...........TT................... CGTGAACTGTAACCTGCACGGGTCTGAATTCCTT 49238 32 87.5 0 .....T.T......A......C.......... | ========== ====== ====== ====== ================================ ===================================== ================== 26 32 98.8 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GATTGGGGGAGTTGCGGTGACCTCGTTCGAACGGGTGGAGCCTTGGGACAGGAGTCCTTTTCCGATCCTGGCGGCATGGTTCGAGGATGAGGAAGCGAGTGCGGGAACGAATGGACGGGATATTTCGGGTCGAAATGGTTCGGTAACACGTTGAGCAATGACGTTGAGCAATGAAACCCTGTACGATGTGAATGAATGCACGAAGTGATGGAGCGTTGCATATACGGACTCAACAAGCACTATATTATGAAACTGCAAAATGTGGTAACTTATAGATATAGATTTAACGATAGAGAAGCCCCTCATGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATAGAATTTCTATATTTTAGGCAAAGTCCATTTTATGGTTTGTTGTAAAGTGAGAAATGACCTTCTTTAAATTGATTCTATAGCTAATTTGATTTGTTTACTCATAAGAAGAGCGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : TGTGGACCTCTCTAAGCAGTCAAGCTCACATTGAGCGTCGCATCTTGCACCGACGCATAAAAACCATTATGAAACCAAAAAAGCATCTACCCCCTTATCAAAAGATGACGTGGGGGTGGGATGCTTGTCTTTTTTATAGAACATACGTTCCCTGACAGGTTGTTGTCACTTTCTTCAATCATAATAGAATTTAGAGTATCAATACGTAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGTCTTTTCTCTGCATTGAAGCGGACTGCACTGACAAGCATTCCTATCATTGTTTGTTTGATGTGGTTGCCCCAATGGAAGTGGATTATATATGCTTCTGCGGCTTATCTTTTGCTTCATTGGAGCAAGGACTTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCCGAAGAAGTTACGTTCTGACAAGGGAAGAAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 61011-63351 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRZ01000003.1 Paenibacillus thiaminolyticus strain NCTC11027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 61011 32 100.0 34 ................................ ATAAATGGCGCGGACAACTTCCTCTTTGTCGTAC 61077 32 100.0 33 ................................ TTCGGTCGTCAGGCCCTCCATCGGGTTGTTTAC 61142 32 100.0 34 ................................ ACGTTAAGCCCTCCTTATTAAGAATATTTGGCTT 61208 32 100.0 34 ................................ ACGTCCATGCTGCCGCTGTGCTGGATGTCTTGCT 61274 32 100.0 36 ................................ AACGCTGGAGTACGCACGCCAACTGGTCAAAGAAAA 61342 32 100.0 34 ................................ ATTATTCGGAATTACATCCCGAGCCACTAACTGA 61408 32 100.0 36 ................................ TCGTGGTTAAGACCACACGAAAAAAAGAAGGGGACA 61476 32 100.0 32 ................................ CTCTGGCGTCATTTGCCGCTCTACAACCTTGC 61540 32 100.0 34 ................................ CGTCGATGCTCTTTGTGTCGCTGGGCATTGTGTA 61606 32 100.0 33 ................................ TTCCGGCAGGCGATCCGCCTGATGCAAAAATTA 61671 32 100.0 34 ................................ ATCTACGCGATGACACCCATTTCATTTCTATTCC 61737 32 100.0 32 ................................ GCTACGCCACACCCACGCCGTCATGTTGCTAG 61801 32 100.0 36 ................................ AGAATTTGCCACAGAACAAAATCGAAGACCTGGCAC 61869 32 100.0 35 ................................ ATTTAAAAGTGGGTGAGGGAAGACAACTAGCTGGA 61936 32 100.0 33 ................................ GTTGATAACGCTGAATCTATTATCAAGTATCAG 62001 32 100.0 33 ................................ TTAACATGGCCGAAAGGGCCGGTACCTCAATTA 62066 32 100.0 34 ................................ ACAGTTAACACAAAAGCTCAAAGGCGGGAATCAT 62132 32 100.0 34 ................................ CAGCAAGTGTAGGCATTTACGTCATCCTTCACGA 62198 32 100.0 33 ................................ TCGCGGTATATGCGGATTAGATAATCGATCGCG 62263 32 100.0 35 ................................ TGGTACTTTGATGCGCTGATCACATACATGACATT 62330 32 100.0 33 ................................ ACCATATTCTAACGATTGATACCGCAAGATACC 62395 32 100.0 35 ................................ TCTTTTGGTTTCGCCATTCCAACCACCTCGACTTT 62462 32 100.0 33 ................................ ACTTGCTGTTCATCTTGATGATCGCAAAATCGC 62527 32 100.0 35 ................................ TTGCAATCTGAAAACATACAGTGTTGGCTTACCCC 62594 32 100.0 35 ................................ ATTTATATGATGCTTGTTAGAATTATTGCGGACAG 62661 32 100.0 34 ................................ TTTATTAATTGAATCATTAATGGCAGAGGGTATT 62727 32 100.0 33 ................................ AGAATCGGATGAGCAGCTTAGAGTGCTTCCAAC 62792 32 100.0 33 ................................ CCCATGCGTGGGGCGTACATCTTCGACCACTAT 62857 32 100.0 34 ................................ AGTCCCCTGGATGGACTTTATGTAAGGGGTTTTT 62923 32 100.0 34 ................................ TTGACACAACGGTTCCCGCTACTGACACCTCTAA 62989 32 100.0 34 ................................ TCGATGCTGCTGCTTACAATCCCACGCAAGGCCT 63055 32 100.0 34 ................................ AATGCGGCGCAAAATATCAGCCATCATCATCAAC 63121 32 100.0 33 ................................ GCTAGATGCTCGTATTGATGATCAGGCAGCTTG 63186 32 100.0 33 ................................ TTCCGGCAGCCGTACGATAAGCGCAGGATGATT 63251 32 100.0 34 ................................ GAAATGCTCCGGCCAGACCTTGAGTTGATGTTCG 63317 32 84.4 0 ....................A..T.A.A...G | ACC [63339] ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.6 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTCTGGAAGTAGGTGGTATAATTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGCATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAATTCGCCAGCTTGAAGATCCAACTTATCGATATGATTGATGAAAAGGAAGACAGCCTGCGATTTTATCAATTAGGAAATAACTACAAAAGCAAGTTGGAGCATGTCGGCGTGAAGGCATCGATCGATATGGAAGGGACGCTAATCTTTTAGTGCGAATGTGTAGTGCACATGAAATCCCTGGGGGATTCGCACCATGTTTTTTCTGTATTATGGGTAATAACCATTTTGTGGTTCGTTGCGGGAGTGAAAAATGACCTAGTTTATATTGATTCTAGAGCTAATTTGATTAATTGAATCATAGTAAGAACGAAAAATGATTGTAACAATCATTTTTCGCT # Right flank : GCCCGCTTGCGAGAAAATTAACTCACAAAGTCAGCGGAGCCGCATCCCCCTATTACTGCGCCTCTGCCGCAGATTTTCCCTCTATCCTCATGCCTAACGATCACCTCCCACCTCCCTCCACCCAAAAATACAACGACAGCTTTCTCCGTACATGCACTTCTGGGCCATTGCCTACATACAATGTATCACTGCGCCGGGATTCGGCTTGCTGCGAGGAGATACCGCTAGGCGCAAGACGCAGAATAGAACGTTGTCAGACTCCTGGAGGTGGCTAGCATGACGGGTTTATTTGCTGCAATCGCCGTGTTCATCAAGCAATTGACGCTACTTGTATCCTACGTCAAGAACAATGCGTTTCCGCAACCGTTGGCGGAAGAGGATGAGATGAAGCATTTGCAGCGGATGGCGGAAGGCAATGCACAGTCGCGGAATACGCTCATTGAGCACAATCTCCGCCTGGTTGCGCACATCGTGAAGAAATTCGACAACACGGGAGAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 636511-638468 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRZ01000006.1 Paenibacillus thiaminolyticus strain NCTC11027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 636511 32 100.0 34 ................................ CCCGTTATCCATATCGCGTTACGATCCGCACATG 636577 32 100.0 34 ................................ GACTAATTAACGACAGGCTCGGGTATGAGGCCGC 636643 32 100.0 34 ................................ GCCTATTTCTGCCTTCCGGTTCACCTCGCGATAT 636709 32 100.0 35 ................................ ATTGAGTAGGTGCATCGCGGTCATCGTATCCCACG 636776 32 100.0 33 ................................ ATCTCTTTGCCTGGACTGTCGTTGTCCGTGAAT 636841 32 100.0 35 ................................ GTACCCATTCGCGAGTAGTGCTGTGGCTACCCGCA 636908 32 100.0 34 ................................ TCGTCGCCTGCAACGGTCTATCTCGCGCTGTATA 636974 32 100.0 33 ................................ AATTCGACGACGCGCGAGGTATTACGCGAATCA 637039 32 100.0 36 ................................ GATATCACATGTTACGATGAGGCACCGGAGTTTCAC 637107 32 100.0 34 ................................ GTACTACCTACTTGGAATAGATTCATATGAAATC 637173 32 100.0 32 ................................ TCCCATATCCGCGAGCTATAGTCTGATCCCGC 637237 32 100.0 36 ................................ AACTTCGTGTATGACTATCAGGCAAAGGAGTTCGGG 637305 32 100.0 35 ................................ ATACCTGCGATTTCGGATTGGGCATTCGACGGTAA 637372 32 100.0 35 ................................ ATCCGGAACCTCAAGAGCACGGTCTGGATGATTAG 637439 32 100.0 34 ................................ ATCGATGCTCAAGCTATTGGCCGGAATGGATTCC 637505 32 100.0 34 ................................ TTAGCAGGAGGCTTTCGTTTTGCCACCATAGATT 637571 32 100.0 34 ................................ ATATTGAATAGGAAATAGGGTAAGCAGCTGCGAA 637637 32 100.0 34 ................................ GCTCCAGGAAGAAACTCATTGAACAGTAACCACT 637703 32 100.0 34 ................................ ATGAAGCGAGACGGGAAACCATTTCCGCTTAGGG 637769 32 100.0 35 ................................ CTATGACAGCAGCGTGGTTATTAATCCGTCCTATC 637836 32 100.0 34 ................................ ATGTATCGCAGACCCGACGCTTTCAGACCGCCCT 637902 32 100.0 37 ................................ GTCGCTACGGCAGGAACCATTATGGGCGAGTTTCAAC 637971 32 100.0 34 ................................ ATTAGGCGTAGATCTAATCAAACTGACATCCGCC 638037 32 100.0 35 ................................ CTCACGAACTTTTGCTTTTTTTCGTCCCAGACATA 638104 32 100.0 36 ................................ AAATGACCATGTGCCAACATGTTCGAATCCCCGCTG 638172 32 100.0 35 ................................ GCAATGACATCGAGAATACCCGCATGAATCTGCCG 638239 32 100.0 36 ................................ TTGCGTATATATCAATTTTCCATCTTGGTACAGTTC 638307 32 100.0 32 ................................ AATACGACGGAACGGAAGGCAGTACGCGCATC 638371 32 100.0 34 ................................ CATTAGGATTTGGATTGCTGACGCAATCCCCTGG 638437 32 78.1 0 .............A...C..T.AT.....T.C | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 99.3 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TTCTTTTTCCAGGGAAATGGGTCGGAAGGTTCACGGGTGCCGATGCTTCCGGTTCAGGTAGTAGGGTGAGGCTGTTAGTGCTTATCGAGTTAGTGTGGGTACGGAGGAAGTGCCCGTGTCGCTGTTCGCTGGTGGGGATAGACCTTGCTCACTCCTTATAAGCATTCTCCCTTCGGCTCAGAAAAGCAATCTTTTGCTTAAAACCGATGTAGAAAGTTAGTGCAACACATGTAAGCATGATATACTCAAAATCAGGGCAAAAGAAAATAACAAAATGGTTTTTATTTTTATTATTTAATAAAAAGCCCATTCTGTGGCAAGTGCGAATGTGGAGTGCATATGAAATTCCCGGGGGATTCGCACCAATTTTATTGAAATATTATCCAATTTTGTGATGGAAGTTCAATGGTTTGAAGACTATTTCGTGCTTAATCGCTCACTTGGTGTGAAATTCATGTAAGAAAATGTTTATATTATTATATATTGTGTTATTTTTCGCT # Right flank : CCGATTATATTCCCTTTCTCAACTGTAAAGGACACATCTACAGGCGGTTTCGGCAACTGCTGTGGAGATGTCAGGCGGGATAGTATTGCCATAGGTTTGCAAAGGGGAAACCTCGCTTTAAAAGCCTCTCAGTCGATTTGAAAAAATTGAATATTATGGTAATGTGAAAATAAAGATTTCTTGGAAGGGTGAGGATATGGAAGCATCGTCGCTACAATATTTCACTATTGGCGACAGCATAAGACAATACAGAAATAAAGCCAATCTAACGCAAAGCCAGCTTGCCGAGTTGTCAGGCGTCAGCACAGGCTATATCTCTAAAATTGAAAATGATGAGGTAGAGCGTCCTTCATTTGAAAAAGTTTGTCACATAGCTAAGGCATTACAAATCCCTATTCATGAAATCGTCCAACCTTATCTTGAAATCAGGCAAAAATCCAATGTTTTGTTCGGAATCTTACGAGAAGTGATCAAGGAAGATGCGACGGATTTAATTGTTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1169176-1169868 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRZ01000006.1 Paenibacillus thiaminolyticus strain NCTC11027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1169176 32 100.0 33 ................................ CCGTTCTTGCTCGTATTCTGATAAGGAATAAGT 1169241 32 100.0 34 ................................ AACTCTTCGAATGTCTTCGGCGCGCCTGTCGGCA 1169307 32 100.0 34 ................................ AAACAAGAAAAGAACGGGAACCTGGAGCGTTACG 1169373 32 100.0 33 ................................ CGTCGCCTCGTCCGTACTGTGGCCGAGATTTTT 1169438 32 100.0 35 ................................ GTTCGGAATGGAAACGTGCCCGCCACCCCGGCCGG 1169505 32 100.0 34 ................................ AAACAAGAAAAGAACGGGAACCTGGAGCGTTACG 1169571 32 100.0 34 ................................ CGGAGACGGCGGTCGCCTGGGCGCAGCAGGCATT 1169637 32 100.0 35 ................................ GCTCTTTGTCTGTAAATTTACGGGACGTGGATGGG 1169704 32 100.0 34 ................................ TGGGATTGCGTTCAGTTCCAAGGCTGGCATTTGA 1169770 32 100.0 34 ................................ GTCAACGAAAAACGTACCCAGGTTGAATTTTTTG 1169836 32 90.6 0 ..........................G.G..C | C [1169861] ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.1 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CACCACTTATCTGGTTGACCTGCTGAGTCCGTTGGAGACCCACATGAGCAGATACCTCGTTAGAGCCAGCGGTAATGATTATTGCCCATAATGTAGCCCCGTGTCGCTAGCCCCGGGCCCACAAACCGGGGCTTGTCCTCGGCCGCCCTCAAGCAAGGGACGACCCGTGAGTGCAACGACCGATACCCTATCATGCTGGCCCATGATATACTAAATGAGAGAACCAGTTCAATAATTCAACAGAACGAGTGGAAGATTCAGCCCTTTGCCCCGGTAAGGAAAGCGGAGTTGTGCAACTTGATGATTGGGGCACACCTACCGGTGCGAATGTGAAGCGCACATGAAATTCCCGGGACATTCGCACCATAATTATTACATAATTAACCAATTTAATTAGAAAGAGCTATGGGGGAATTGCAAGTTTTGGTTGTTCTATTCATTTTCTAGAGTTATTCAATCATAATTGAGTGGATTCTTGACACATTCAGTCAATTCTCGCT # Right flank : CAAAAAAAGGGCCGTTTCGCAATGAAACGGCCCGTACTATGAATCAATGGGATTGTTCCTTTAACTGCGTGATAATCTCCAATGAAAAGCCCGTGACTCTGGCGATCAATTCTGGATCCAAATCTTCGGCGAGCATTTGCTTGACAACTTCTTTTTTTGCTTCACGCTTACCTTCTCTTCTGCCTTCGCGTCTACCTTCACGCTTAATGGCATCCAAGGTTTTTTCAAGCCCCATAACCGATACGCCTCCTTTTACGTTTTGAATAAGCTCGCGCAACTGTGGTTCATTTTCCGGCAATTTCTGACTTAATATATTCGCCATCCAGGCGATTAATTGCTGTTGGCTGTCCTCTGGCAATTGCTGTATCGTATGCATCAGCTTGCCGAGCCGATTCAGTAACTCCGTCTGATCCGCCGTCTGATCAAGCAAAAAGACAGAACCGATCGTATTGGAAAGAGCCAACAACTCTTCTTCTGTATATCGAGCAACATCAATAAGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1463878-1465237 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRZ01000006.1 Paenibacillus thiaminolyticus strain NCTC11027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 1463878 32 100.0 34 ................................ TTCTTCTCTCTATTGGCCATCTTTTCACATCCTC 1463944 32 100.0 35 ................................ AGACGGTAGCAGTCCAGGAAGTCCGGAAAGAATAC 1464011 32 100.0 32 ................................ AGTACGGGATGATAGACACAAAATCGAAAAAC 1464075 32 100.0 34 ................................ TTTACATTCTTGTTTGTGCTCATTTGTTGCTCAT 1464141 32 100.0 33 ................................ TGCTACGCCCATAACACCGTCGATCGCACGTTG 1464206 32 100.0 34 ................................ CAAAAGAAATTCGAGCAAAAAGCATCCAAAGAAA 1464272 32 100.0 33 ................................ AAACCATAAACTCATGAGCCACGCACAGCCGGC 1464337 32 100.0 35 ................................ TTGCTGGTTCCCAATAGTAACGGTTCCGCGTTAGC 1464404 32 100.0 33 ................................ ATGAAATAGCGGATCTGGCTCAGGCACTAACCT 1464469 32 100.0 41 ................................ GGGGTGATGATCATGAGGCTGGATCAATGTATCTGTATCGG 1464542 32 100.0 35 ................................ TTGTAATGGATATCGATCGTCTTGGGCGCGGCGAT 1464609 32 96.9 35 .................C.............. ATGACTGCTGGCACGCGGCCGGCGGCGATATTCTC 1464676 32 100.0 34 ................................ AACGGTTTGATTACGGGACTTGCGGCGTGCAAAC 1464742 32 100.0 34 ................................ TTGTATTGACGGGAGGTGTACGATTGCGTTCGTA 1464808 32 100.0 32 ................................ ATTGTTGATTCTCGATCCAGCGTATGTTGAAC 1464872 32 100.0 36 ................................ TGATTATGGCGGCCACTTTATTAGCTGGTCACTTAA 1464940 32 100.0 35 ................................ GCCCTGAATGCTATTACGTAGGTGCCCGCTGTCCC 1465007 32 100.0 35 ................................ AAGACCTGGGGGCCGCTGACGGAAGACGGGCAGCC 1465074 32 100.0 34 ................................ CCCAAACGCCTTATTGAGCAGTTCGAAGTTAAAT 1465140 32 100.0 34 ................................ TGGACATTAGAGAAGCGCTGTGAGCCCAATATTT 1465206 32 87.5 0 ..........G.........C...G.....T. | ========== ====== ====== ====== ================================ ========================================= ================== 21 32 99.3 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ACGTATCGTGGCGTTGGTGTACCGTATGGTGTTCATCGGTTTCCGTCCCCATACATGCCTCTCCTTCCTACCATCTTTTCCTTTATTATACCTGATTATAAGTGGTGGGGAATAGGGTGGAAATCTAGTCGAGTCTATGGTGTTATAACGATTCCACGGGAGTTTTCGATTTTTCTGATTCTTTTTTTGGAGCGGTAGATCTAACGCTGTGCTTGTTCAGAATAGTCTGAAATTATCCATTATTTCGATCCCTCTGTGGTATACTGAAAAAAGGAGTTTAGAACTCGTTTGAAATGGAGTGAAAATAAATGAAAAATCGGTGCGAATGTGAAGTGCACATGAAATCCCTAGGGGATTCGCACCAAAATTATTGAAATATTGTCCAATTCAGTTTGGAAAAGTTAATTAGTTTAAAGCTATTTCGAGCTAAATCTCTCATTTTCTCCGAGATTTTAGCAAAAAACTGATTTTATTGTTATATTTTATGTTATTTTTTTGCT # Right flank : TTCCCAAAACCGGCCTTCGGCCTTGCGGAAAAGTTAAAAACGTTTCCGATACGCCACAAAAGCAAATTTTCTATGACAAACCCGGTTGTGATGAGGCTGTCCCATAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATATACAGATAATAGAGTGGCAGGAAGACGGCGGACGGAAAAGCGGCGGAATAGGGACGGGTTTAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAAATCCTGCATGAATCAGGCTGTTGGAAAACCCCTGTTTTTTTCGGAAGGTGAGTACCTAATCGAAACTTAGCATTCAGAGCGTCATCGCCTTCTGGAGACATCATAATCTCCTGGGGTTTTAACGTGTGGAGGAATTGCTGCTATTTTACAGGAATTTCGGCTCAATGAGTCGACATTTCAAGGAATTGCTGCACAGCTACATCATTTTAGGGCCTTTTGAGCTAAGTCGAAGAGAAACGGGTGAAATTCCTGCAGTTTTGCAGGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //