Array 1 24499-22868 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKB01000001.1 Moraxella catarrhalis strain 24/92/1 NODE_1_length_198582_cov_7.664181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24498 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 24438 28 100.0 32 ............................ TAGCAAATCAGCTTAATCTTTTTATTAAAGAC 24378 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 24318 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 24258 28 100.0 32 ............................ TTCGTAGGTGTAACTATCACAAAGGTGAACTT 24198 28 100.0 32 ............................ TCATATTCAGCATTATAATTGACATGGCTGTT 24138 28 100.0 32 ............................ CTTGATAATTTCTAATTGCGCGGCGCGTATAT 24078 28 100.0 32 ............................ ATTTAAGAAAAACTAAACCAAAGTACCAAGAT 24018 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 23958 28 100.0 32 ............................ TCACACAAGTTTTTGCCAAAACAGTATGACCA 23898 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 23838 28 100.0 32 ............................ AAAGCTTGTCTGAGCGGATTAATACCGTGCAA 23778 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 23718 28 100.0 32 ............................ TATTCTCTGGTGATTTGATTGTAGCAACAGTG 23658 28 100.0 32 ............................ ACGCTATTAAGCAAAATAACATCAGCAGACGC 23598 28 100.0 32 ............................ TCGTAAAAATCGCAAAGTCAACAAAATCAAAA 23538 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 23478 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [23436] 23435 28 100.0 32 ............................ GAAAGTTATCAAAACGGTTTTGGCAGTACTTA 23375 28 100.0 32 ............................ ATGGATTTACAGAAACTAGAAAAAGAATTGAG 23315 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 23255 28 100.0 32 ............................ CATTAAGAGCTTCAAAAATCGGATTAAAAGCT 23195 28 100.0 32 ............................ ATACGCTCAAACCGACCGATTTGAAAGCAATT 23135 28 100.0 32 ............................ AGACTTTCTTGATTTGGAAAAGCCATTTTAAA 23075 28 100.0 32 ............................ GATAACATTGTCATCGCTCATGTTGAAAATGA 23015 28 100.0 32 ............................ ACTATGTCAGTCAATCTCATTGGTGCGTCAGC 22955 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 22895 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TAGAAAGATAAGCTGTACGGGCTAAGCGATACCACTGTCTTCACGACCGCACAGGTCGCTTAGAAACGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCCCTTCACGACCGCACAGGTCGCTTAGAAAACTGTCAATATAAGCCTGCGGAAATTCATAAACTTCACGACCGCACAGGTCGCTTAGAAAGCCGATGGCTTCTTGGAGCATGGCAGCCGCCCCTTCACGACCGCACAGGTCGCTTAGAAAGCCGTGCCCCCATTGATGCCTTTTTTGTCTGTCTTCACGACCGCACAGGTCGCTTAGAAAATATCCAGCGCCATTACCAGCCACCCACTGCACTTCACGACCGCACAGGTCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAAATGCACGCAAAGAATTTCATGAAGATGCTTTGC # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25260-24691 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKB01000001.1 Moraxella catarrhalis strain 24/92/1 NODE_1_length_198582_cov_7.664181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 25259 28 100.0 32 ............................ AACAGCATACCTTCACTGGCTTGGCTAAGTTT 25199 28 100.0 32 ............................ GCCACGAACTTTCGGGCAGATTCATGATTTTT 25139 28 100.0 32 ............................ CATCGAATCGCAAAAACTCACTGTTGATCAAG 25079 28 100.0 31 ............................ ATATCGCTAAAACTGTGCCAAGCGTATCATA 25020 28 100.0 32 ............................ GATAAGCTGTACGGGCTAAGCGATACCACTGT 24960 28 100.0 34 ............................ CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC 24898 28 100.0 32 ............................ ACTGTCAATATAAGCCTGCGGAAATTCATAAA 24838 28 100.0 32 ............................ GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC 24778 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 24718 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATATCCAGCGCCATTACCAGCCACCCACTGCACTTCACGACCGCACAGGTCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAAATGCACGCAAAGAATTTCATGAAGATGCTTTGCCTTCACGACCGCACAGGTCGCTTAGAAAAGAGCGTTTTGATAAGTCTTTTGATGAAATTCCTTCACGACCGCACAGGTCGCTTAGAAATAGCAAATCAGCTTAATCTTTTTATTAAAGACCTTCACGACCGCACAGGTCGCTTAGAAATGCACGCAAAGAATTTCATGAAGATGCTTTGCCTTCACGACCGCACAGGTCGCTTAGAAAAGAGCGTTTTGATAAGTCTTTTGATGAAATTCCTTCACGACCGCACAGGTCGCTTAGAAATTCGTAGGTGTAACTATCACAAAGGTGAACTTCTTCACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //