Array 1 5249-6801 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWV01000052.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4583 NODE_52_length_14592_cov_52.842447, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5249 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 5310 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 5371 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 5432 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 5493 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 5554 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 5615 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 5676 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 5737 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 5798 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 5859 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 5920 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 5981 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 6042 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 6103 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 6164 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 6225 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 6286 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 6347 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6408 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 6469 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 6530 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6591 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6652 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6713 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6774 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8550-9067 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWV01000024.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4583 NODE_24_length_73043_cov_50.462409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8550 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 8611 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 8672 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 8733 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 8794 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 8855 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 8916 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 8977 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 9038 29 93.1 0 ............TC............... | A [9065] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //