Array 1 97895-95608 **** Predicted by CRISPRDetect 2.4 *** >NZ_MINX01000034.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45461 45461_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97894 29 100.0 32 ............................. GGTGCCGATCAGATTCACTTTGCCTTGCGCCT 97833 29 100.0 32 ............................. TGTAACGTCGCGTAATGGCAAAGTCTGGTACA 97772 29 100.0 32 ............................. GGCAAGGGCAACAAGTCGCGGGCTATCCCTTG 97711 29 96.6 32 ............................G AAGTCGAGGTTGAGGCTAAGCGGCTTGCTGCC 97650 29 96.6 32 ............................G CTGTAGGAATAGCCGGCAGGCGCTGAATACAG 97589 29 100.0 32 ............................. AGTCGTTGAAAGTCCGTCGTGTCGAGGTCCAT 97528 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 97467 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 97406 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 97345 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 97284 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 97223 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 97162 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 97101 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 97040 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 96979 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 96918 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 96857 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 96796 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 96735 29 100.0 30 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCG 96676 29 93.1 32 .....T......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT G [96674] 96614 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 96553 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 96492 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 96431 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 96369 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 96308 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 96247 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 96186 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 96125 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 96064 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 96002 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 95941 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 95880 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 95819 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 95758 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 95697 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 95636 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.5 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //