Array 1 15416-13389 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZM01000019.1 Lyngbya aestuarii BL J laest3.contig.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 15415 37 100.0 35 ..................................... TAATCATCAATATTATTTGTTTTGTTTTGTGTTGG 15343 37 100.0 38 ..................................... TACTTGAGTTAAGAGAGGCATACAAATTCCTTAAAAAT 15268 37 100.0 40 ..................................... CTCACAAACTGCCCAATCTAAAGGGTTGCGGTTTTCTAAG 15191 37 100.0 37 ..................................... AGCAGACTATACACAAGAAAAATCAGCATTCACCCCA 15117 37 100.0 35 ..................................... ATCGCTAATTCCCCCCAATCGGTCATTACCTTAAC 15045 37 100.0 33 ..................................... GAAACCGCGTCTTTTTTGTGGTAAGTGTAAGGT 14975 37 100.0 41 ..................................... AATCCCTTCTGATCTGCTTCCACCGCTCCCACTGGCAGGGT 14897 37 100.0 36 ..................................... CTCATGATCGCCGGATGCGGTACCGGCAGAGGGTCG 14824 37 100.0 33 ..................................... TTGTAGGCGGTAACAAAGCTGATACCGTTAGGA 14754 37 100.0 43 ..................................... GCTTCTGCTCTTTACTTTCTAGCTCTTTAAGCTGCTGATTAAG 14674 37 100.0 35 ..................................... GTAGTCTTCTAAAAACAGTTTAAACTGACTATATG 14602 37 100.0 36 ..................................... ATGACCGTATTAATGCAACAACAAGTGCAGTTAGAT 14529 37 100.0 37 ..................................... ATAAATATCCCTGAGTAATTAATAAATATATTCAATC 14455 37 100.0 34 ..................................... ATTTGTTGTTGCTGAGATGGAGTTAGACCATCTA 14384 37 100.0 38 ..................................... TTAGATGCTGTAGGATATAATCTTTCACCTTTAGAAGT 14309 37 100.0 34 ..................................... ATTTCATCATTAATTTAAGAGGCAAAACTATCAG 14238 37 97.3 36 ...............C..................... CTCTAAGACTTATTCAGAATATTCAGACTAATCAGA 14165 37 97.3 40 ...............C..................... CTTCAATAAAATTATCAATATTGAAGTCGTTCGGCATCGT 14088 37 100.0 35 ..................................... AAACTTGAAGCTCTCTCGCCACCTCTTGATGTCAT 14016 37 100.0 35 ..................................... ATAGTTTGTCTTTCTTTTATTACTCCCCCGAAAGG 13944 37 100.0 37 ..................................... TAGTGATGGGTGTTGTGTTAAGAGATAACGCTAGAGA 13870 37 100.0 36 ..................................... TTCTGCGCTCGGCTTCTTCTTTTCGCTTTCTGTCTT 13797 37 100.0 40 ..................................... TTCTCTGGAGTCTTAGCAGTTTTCTCTGGAGTCTTGCCGT 13720 37 100.0 35 ..................................... AAACGCCATGATTGCATTCCGTGCGGCATCGCCTG 13648 37 100.0 40 ..................................... GTTTGCAGCCCTGTTCTGTAATCGATCTGAGCGAATCCGA 13571 37 100.0 37 ..................................... AGACAGATAGATATAGCGATCAGCATTAGGGCGATAA 13497 37 100.0 35 ..................................... CTTGAGATTGGATTACACTCCCTCAGATCCTCCCA 13425 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 28 37 99.8 37 CTTTCCAACATTAAATTCCCCGCAAGGGGACTGAAAC # Left flank : CGTTATTTTATTTGATTATCTACGATTTGCCGGATTCCAAAGCAGCCAATAAACGCCGGACTCGTTTGCATCGGTTGCTTTCGGGTTATGGGAAATGGACGCAATACAGCGTGTTTGAGTGTTTTCTGACGGCAAAACAGTTTGTCATGCTTCAGCACAAGATTGAACGTTTGGTGAAAAAGGAGGATTCGGTTAGGATTTATGTGTTGGATGCCGGGGCGGTTAAGAAAACGATCGCTTACGGCTCCGAAAAGCCTAGACAAGATGAGACGATTATCTTATGATAGTTTCATCAGATTTTTCGTGTACCGAAGCGGAGGCGAAAACCCCAGGGGGTTCACGAAAATCGCCAGAACCTAGACAAATGAATAGTTTCACAGTTTCGGTTGTTGGTAAAAGATGCCGGAGTCGGGATTTTCGAGGGCTGAAATGAACCTAATTTTTAGGTTCACGAAAATCGGTTCTAGAAGTCTCTCCCTGACTCACCTTCAGTCGGCGGA # Right flank : CTAGAGCTGATGGGAGAGATCTGATTGATTTCCTTTGAATTGATTTAACTGTTTTGCATAGTTGTAGATTAGCGAGCAATGATGATCAAAAAATGACTTGTCAAAAGTAAGTAAATTTTTAGTTAACTTCTAACGTTTAGTAGTAAAATAATACACCGACTCAGAAGATGAATTAGCTGATGTCAGGAACACGTTGGATAGCTTGGATTTTTGTCCGCAATAGTTGGTTTCGCTTTTGGCAAGATGCTCGTCAACTCCCCAATCAAGTTTGGAAACGTTGGGCGACAGTATTAGCAATTGGGTTTATTGTCACGACAATTGTTGCTTTTGTAGTCACCTTTTGGGGGAAGTCTGCTGTTAATACGGGCGGGTTACAGGCTTGGGATGAACAGATGCTGATCGTGATTTCCCAAAATGTTCCTTTGAGCTTTGCCAGAAGCATCACCTGGGAATCTCCCGGTAATTTAGTTTATATGCTGCCCTTAATAGCGGGTGTAGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACATTAAATTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 75720-78121 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZM01000024.1 Lyngbya aestuarii BL J laest3.contig.23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 75720 37 100.0 33 ..................................... GCGAAGTTCAACATCATACAGACAAATCGAAAG 75790 37 100.0 34 ..................................... ATCACAAATCTCTATGAGCCGATGGGTGAATTTT 75861 37 100.0 33 ..................................... ACTTCCGAGAAAAATTTTAAGGCTTCTAGGCTT 75931 37 100.0 39 ..................................... ACTTGATGCTTAAACAGCACCATTCGACATAAGGCTAAA 76007 37 100.0 35 ..................................... TTAATTAGATCAGGTTTTGGAACTATACCAACACC 76079 37 100.0 34 ..................................... CAGAGGAAAGAGTCGCTTAAATCAAGAAACGCAC 76150 37 100.0 37 ..................................... AACGGGGTTTGAACAGGTTACTCTATCGGCTCAATAT 76224 37 100.0 32 ..................................... TAAATAAAATCTATCCGTCAATGGTTTTAAAA 76293 37 100.0 34 ..................................... TTGACTAATTTTCTTGAGAAACGGGAGATTCTCT 76364 37 100.0 41 ..................................... TCCATCCACCAGGGTTTACAGCGCAATGAATTTCTCCGATA 76442 37 100.0 34 ..................................... CAAAGTGACTCTCTAAAGTATATTGCTGAGAAAA 76513 37 100.0 32 ..................................... GAGTGGGGAGAAGATGGAGGAGGGGTAAGTCT 76582 37 100.0 34 ..................................... AAGCCAACGATAACTATAGATGAAGCTATCGGAA 76653 37 100.0 35 ..................................... TTTGGTTGGTGAGCATTTTGAAAAAGTGGCAAATT 76725 37 100.0 38 ..................................... TATAGCGTTTCACGTACCAGGAGATTGTGGTTGTTATT 76800 37 100.0 38 ..................................... AAGCGAGAGGTTGTTAAACCCTCTCAACCTAGCCTAGA 76875 37 100.0 48 ..................................... TGCTAGATGCAGTATAAGCCCCGGTGGAAGGGGCTACTTCCGATGGGT 76960 37 100.0 33 ..................................... TCAGCCTGACTAATTTCCGGGTTAAGATTGCCA 77030 37 100.0 42 ..................................... GAAGCAAACGTTAGAGGAAGCAGAACATGAGTATCTACACCA 77109 37 100.0 39 ..................................... TCCCCATTGTTCTATAGAAGTTCCCAGCTTGTTGTTACC 77185 37 100.0 34 ..................................... TCGACTGTTTGCCGTACTGTCGAGCGCAATGTTG 77256 37 100.0 35 ..................................... ACCGGAACAGATTGATGAATTGCTACAAGGTGACT 77328 37 100.0 38 ..................................... TAACGTACATAATACACAATAATTAAGTTCAAATTCCA 77403 37 100.0 38 ..................................... AGTTTTACGTGATGATTATAAATCCCTACGCAAGACGG 77478 37 100.0 44 ..................................... TGAATCATCGGCTTCTTCACCTTCTATTCTCACTATGATTTCAA 77559 37 100.0 34 ..................................... ATTATCTCCAGGAGATGAGGCAACGAACGAGCTA 77630 37 100.0 34 ..................................... TCTTTACGGCCCCGAACGGAGCTAGTGAAACTAA 77701 37 100.0 41 ..................................... AGTTGCTTTTCATCTACTCCAACAACTGCTGCTACTGCCAT 77779 37 100.0 43 ..................................... TTTGTTAATCTCTTGAATAAGTCTCTCAGAACTAAGTCTGAGT 77859 37 100.0 34 ..................................... TGGGAAAGTTGCAAAAGGATTTTTCTCTAAACTA 77930 37 100.0 34 ..................................... CGAAAAACCGGACACCGTTCGGAATTCTGAACAC 78001 37 100.0 47 ..................................... ATTGATTCGTCTCGTCTCCCAGTTTTTATCAAAGCTTTTAGCCGAAA 78085 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 33 37 100.0 37 CTAGAAATTACCATTAATACCTATTAGGGATTGAAAC # Left flank : AAGCCTACAGCCAGCGTTGTCCGGTCTGTCATCACGAGAATAAAGAACAGAAAGACATTACCAACCATCAAGATTATAATTGCTCAAACTGTGGGTTTACTCATCGCAGTCGGGACGTGATTCCGGGAATTAATATGATTCTTGATGAGTTTGAAGAACAACAACAAAAGAACCTATTAGGGATTGAAACTGAGGAACAGAAAATTATTTGGGATGATTTGAGCAAAGAATGTCGTCAAGCTTGGCGTCTACGGGAGAAGTGGCTTTCTGAAAATGCGCCAGGGGGTGGGTGTCAAGACGAAGTGAATTCGGATAAGCCCTCAAACACCCGTAAATCAAGGCGTAGAAAAAAATGAGCTTGACAATAGGAGGCGCACCTTATATCATGGGGCTTACAGAGATTTTGACGCGCTTGAGCCTCTGTGTTTTGATCAAAATCTGTAAGTCTCGCGCACTGCACCTGGAAAACTCAACGCTATCAATCCTTTCAGAGTCCCGCT # Right flank : CTAAAATTAGTATTCTGAAATCATGTAGGGCGCTGCTGTTGCGCCCCAAGGATATTTTTCTCTATGAAACTAGGCAATCAAAAACTGACTAACGCTTAATTGCGGTGCGCCTGCGAGTATTGCCAATTGAACACTCGGTTGAGCGCCTGCACCATCAACGTCAAAGCTCAACTCTCCCGATAAAGTATTGTAGAGGAAGTTAGCATTGTTACCCATAGGAGTCGGTGCGCCACTTGCCACAAGAGTCCCGGTTGGAGAAGCCGTAATACTTAAAGAAGTTCCTGCAACTAAACCTCCCCCAAAATTGGCGACTGCGATACCGATAGCATCACCTTGAGTTGCATCAAAATCAGAAATAATATCAACTCCACTATCGGGTGTACCGTAGGAAAATAAATCTGCACCACCGCCACCCGTGATCACATCATTACCTAAACGACCTTCAATAGTATTATTCGTAGAACTTCCCACCAACACATCATTAAAATCGGTTCCTGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAGAAATTACCATTAATACCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 17081-13020 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZM01000003.1 Lyngbya aestuarii BL J laest3.contig.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 17080 36 100.0 41 .................................... GGCTCTAGAAATTTTAGGCGGTGCAAATTGCGACATGGTAG 17003 36 100.0 35 .................................... GCATCCATCTGTAACAGCGTTTCTGCAACTGATGG 16932 36 100.0 35 .................................... TTGCAGGGGGACACCATTCGGAAACAAATGCTTTG 16861 36 100.0 36 .................................... CGATTGATTCAGATTCAGTACACTGCGAAGCGATTG 16789 36 100.0 36 .................................... AAAGAATCCATTACAAAAGATTCCTAGTGATACCAG 16717 36 100.0 38 .................................... CAGAGTAGGAGGGAGCCGTATGAACTTCCTTGTGCGTG 16643 36 100.0 37 .................................... TTTGCAAATACTTTGATTAATCTTTATGATTCTATTG 16570 36 100.0 35 .................................... ATGGCTAATCTACCTGAAATTAAAATGGCTATCGG 16499 36 100.0 40 .................................... ACAGACTTTTAATCCTTACCTTCCATTAATTAAAATATCG 16423 36 100.0 39 .................................... ATTATTTCAAGGAAAATTACTCTACTACTAGAGTAAAAG 16348 36 100.0 39 .................................... ATTTGCTTTGGCGTAAATGGTTGTTCCCAATCCGAATCG 16273 36 100.0 35 .................................... TGGAGTTGACTCTGCGGTTGCTGGAGTGCAAACTG 16202 36 100.0 37 .................................... GTGGGATACTTATAAACTGTCCCCCTGTCCTCCATTG 16129 36 100.0 34 .................................... TGGAACTATACCAACGCCCGATATTATGGTTTCG 16059 36 100.0 40 .................................... AAGGTTTTACAGGCCCACATCCTTTGGAACTCCGAAATAG 15983 36 100.0 40 .................................... CGTTGACTGCTCTCCAAATCCAATGATGAGTTTGTTAAAG 15907 36 100.0 40 .................................... CCCCAAGAATCACCTGGGTTTTCAAACTGTAAAGCCGTAG 15831 36 100.0 33 .................................... CGCAAACTTCTTTAATCAGATAGAAAAAGCCTG 15762 36 100.0 46 .................................... AAAGCAAAAACTAAGTTTTCACTAAGAATTATTGAATACTTTCCAG 15680 36 97.2 35 .............T...................... TTGTAAAGTTCTATGCTTGGATAAAAATTTTCTGA 15609 36 97.2 38 .............T...................... ATCCCATTTTAGAGGTTTAGGGATGACCCATCCGCCTA 15535 36 97.2 35 .............T...................... TAGCATGAGTGACTATGCCAAAGAGGAAACACAAA 15464 36 97.2 48 .............T...................... TCTCCAGATAAAATTGAAGCGGTTAATCAGCTAATCGAGGCTGGATAA 15380 36 97.2 36 .............T...................... GCTGCATTCAACCCTCTCTGAGTAATAGGCGGACGA 15308 36 97.2 38 .............T...................... AGATTTGATGACTAAATTCCAGAGTTCTGGAATAAACA 15234 36 97.2 39 .............T...................... TTGGCGATTTGACTTATTGCCTCACCGCGATCTCGAATA 15159 36 97.2 35 .............T...................... CCTCATAAACAACGTTGTCCGCAACCCCCCTCAAA 15088 36 97.2 36 ......................C............. GACTCTTTAAATGGGATTCCAGAACCATACAAAATA 15016 36 97.2 45 ......................C............. CTGCTGTAGTGATTAATAGCAGTTGGGCGGTTTGCCATAAATGAA 14935 36 97.2 35 ......................C............. TTGGCATCAATGCTCTTGCAGTTGACGGCTACCCA 14864 36 97.2 35 ......................C............. GTTGATGAGCTTGATTATCGTCTAGCCTTGCTTAA 14793 36 97.2 42 ......................C............. AACCGGAACGCTGAGGATTTATCTTTTGGTGACACACGCCGG 14715 36 100.0 37 .................................... GCCGAAGTGATCGCAAGAACATCTTCGCCTGCATCCG 14642 36 100.0 41 .................................... TTTAGAGGCTGAACAGTCGCCAGCCACCGGGAACGACATGG 14565 36 100.0 35 .................................... CTTGAGTAGATTTATTCCACTTCAAGAAATTGCAG 14494 36 100.0 41 .................................... CTAGGGGAAAGTAACTGATAATTGCGATCGCAAGTTGCAAG 14417 36 100.0 35 .................................... TACAATATTCAAGCCAGTCTTCCTCGAAGGTCTTG 14346 36 100.0 37 .................................... TAGATTCCTCCCTTTTTTCCTGTTCCGCGAATTCTTG 14273 36 100.0 30 .................................... TAGTACAATAAGTTTAAGCGGGGATCAAGA 14207 36 94.4 37 .A.T................................ TCATCATACTGGGGGAACATTCCCCCTCTTTTTAAAG TGA [14199] 14131 36 100.0 36 .................................... GAGTTGAATATTAACCACACACAACGCCACAGCTAG 14059 36 100.0 36 .................................... GAGAATCGCTGAGTTGCAACCCCAATTGTTGAGCTG 13987 36 97.2 35 .............T...................... GTCCGAATATTGTTCGTATGGATAAACTAATCCGG 13916 36 97.2 37 .............T...................... AAAATAAATGAGTTTGAAACTCCAAGGCAAGTAAGTA 13843 36 97.2 35 .............A...................... GCGCCTTTATCTCCTTTTGCCCCGGTGGCACCTGA 13772 36 97.2 37 .............A...................... GGAAGCACAGGCAAAAGGGGATAGAGAGTACAACAAA 13699 36 97.2 35 .............A...................... ACTTTCTTCAGGTATTCAACCATCTCCTCTGAACA 13628 36 97.2 36 .............A...................... GAATACCCCGAAGAAATAGAGGAAGGTGTTTCTGAA 13556 36 97.2 34 .............A...................... GGGACTATCAACAGAAAACAACTTACGATATTGA 13486 36 97.2 35 .............A...................... AGCAGGCAAGCCATTAAATCTTCTAAAAACTCAAA 13415 36 97.2 35 .............A...................... CCAAATAACCATAGCCACCTTTATCATCTAAATAA 13344 36 97.2 40 .............A...................... GCCATTTTTGCACCAACTTCGGAAACATCTGTTTCAGTCA 13268 36 97.2 36 .............A...................... CACTATGGATACTCTGAAGCTGAAATCTTAAAATTA 13196 36 97.2 36 .............A...................... GAATTACCAAAGATTCTTATATTGGTGAATGTCCGG 13124 36 97.2 33 .............T...................... CAATTACGAAAACGAACTTGAAATTTACACAGA 13055 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 56 36 98.6 37 TTGCAATTAACAAGAATCCCTATGAGGGATTGAAAC # Left flank : ACCGGAAGCGATGACTTTGGGGCTTCTTATACCGCCCCCGTCGGGAGTTCCCATTTTGAACCCGGTATTACCCCCTCTCAAGAGATCACTCTATCCTGGCTAACTTTTTCCGATGCTGCTGATGAAGCCGGAATCTCTCGGTTGTATGGGGGAATTCATTTTCGCGATGCTGACTTAAACGGACGAATATTGGGGCGAAAAGTGGGGGAAGCTGTCTGGAATCAAGCCCAGATGTATATTAATGGGGAAAATAAATGATTTCATCCTCTTTTTGCGCCCGAGGGTGGGTCTCAAAATTTCGCGATCGCTGTCAATGGCTGGAGGAGTTATGCTGTCTGGGTTTGCAGTCGTTGCTTTGGTGTAGAGGTAGGCGCATCCCACTGTGTAAGGGTTTCAGCGTTTTTGACAGATCTGAGGAAATCCGGTATTATAGTTTTAGTCGCACCCGGCGCAACTGTACCTCGAAAACTGAATATAGTAAGAGTTTCAAGATGCCGCAG # Right flank : CAACAAAAACTATTTTCTATTATTTCTTGATATTTGATTAAGACGGGTTTGTAAATGTTATTTGTGAAAAATATACATTGATGTAGAACCCGCCCCAACTGTTTGTAATTCCCGATTCAAAGATTTATTCGCTTGTTAATTCGGGATCAAACTTCACCAACAAACCCAGAGGAAAATGTTGTAAAATCGTACCAATTCGGATCATATTCGCAGCAGGAATTTGAAAATCAGTAATTGCTTCATGCCAATCTGATTCAGAACCGTTGGGAATTTCAATCATCGTATCTCCCCAAACATCCTCCCCAGTCGGAAACACTCCCGCTTGAACAACGCCTGTTAGAAAGCGAGGAATGACAATAATTGCTGTCTCTTGTTCGTAAATCCGAGCAAATGCAATAATTCGATCTTGATGTTTACCCATCACTTTCAGAGGAACATAATTTCCATACTGAAACAATTCCACAAATTGCTGACGAACTTCCAAAACTCGGGCGATACAA # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAATTAACAAGAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 18821-20702 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZM01000036.1 Lyngbya aestuarii BL J laest3.contig.35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 18821 37 100.0 35 ..................................... ATCGACCGCTTTACTTCGCTTGCCTTTGCAAAGGA 18893 37 100.0 38 ..................................... ACTCAACGACATGGGAAAGAGTTTGTCCCAGGCGAGGC 18968 37 100.0 42 ..................................... TTGATGCGAGACTTCATCTACGACTCAGACGACTTCCGCCAG 19047 37 100.0 35 ..................................... GAAAGACTGTCTTTCATGTTTGAATTAGTCAGAAA 19119 37 100.0 35 ..................................... TTCTAAGAATACTTGCACATAATTCACGGGTTTTT 19191 37 100.0 36 ..................................... AAACCACAAGAGACACCCTGGCTTAATGTATTTTGG 19264 37 100.0 40 ..................................... GAGAGCAAAAATCGAAGAAGAGCAACCTCTTTCCGAAGGC 19341 37 100.0 37 ..................................... ATCTCTTGCATCGGCTTGGATACACTGAAGAAAAATA 19415 37 100.0 39 ..................................... CTTTTCCGATCCCCTTAACTTCAAAGGTTTTTTGAGGAG 19491 37 100.0 35 ..................................... AACTGTTTTCGAGTCTGAGCTGAACAATGGATTGT 19563 37 100.0 36 ..................................... TATCAAGCTGCTAGTATAATAGCTTTTGCCTTCATA 19636 37 100.0 39 ..................................... ACTCAATGTCGTCACCAAAGAAGAAGAATTTGGTGGATA 19712 37 100.0 35 ..................................... GCTGAACTCATAGTCTGAGGCGAAAATGTTAAAGT 19784 37 100.0 34 ..................................... ATCAAAATGAATACCTGGCAAAGTTTCGTTCATG 19855 37 100.0 34 ..................................... TACTAAGAAAGAAGCGGATTGACAATTCCTGATA 19926 37 100.0 44 ..................................... CTTAAAACATCGTTAGAAGAACATTTAGCGGGGATCAAGGATAG 20007 37 100.0 38 ..................................... ATAATATCGACTTCGACATCGGGAAAAATTTCATGCAA 20082 37 100.0 39 ..................................... CAGCAAGAGTGCGTAGACGTGCTTACACGCTACCTGATT 20158 37 100.0 32 ..................................... CGAACCGGAACTACTGGATTGCTAAGTCAAGG 20227 37 100.0 40 ..................................... AAGGGAAGAAGGAATCAGAAGCACCTTCTCCACCCAAATC 20304 37 100.0 35 ..................................... ATTATGGAATGTGTTTGGTTGATGCGATCGCCGGA 20376 37 100.0 38 ..................................... AATCAGGCAATGCTAGTTTAACTTCTTCAATCACTAGC 20451 37 100.0 34 ..................................... GAATAAAGAGGGTTTGTTGTCTCATTCATGCGTG 20522 37 91.9 38 ........T...T.........T.............. TAATGCGTACTGCGCGATCGCTAACTTCATCAACTCAG 20597 37 94.6 32 ........T...T........................ ATCGCCTTGTAATCTGATTGCATCTTCTGAAG 20666 37 97.3 0 ...........A......................... | ========== ====== ====== ====== ===================================== ============================================ ================== 26 37 99.4 37 CTTTCCAAAGCTAAATTCCCCGCAAGGGGATTGAAAC # Left flank : CGGAAAATAAACAGCATATTCTCCTGGAAACTCCGATGGAAGAACCCGCTTGGAATTTACTCAAGGAAAAGCTACCCTCTCATCTCCATTCTCGGTTTGTCTACAGCAAAGGAAAAGTCACTGTCAGGGGTTTGGGGGTGATGAATGCCAGCAAACAACTTGAATCTTTAATCGAATGGTTGGATAAAATGCAGGATGTTCTCAGTGAAAAGCAAGAGGAAGTGTTGACCGTCGGTTGATTTTCTGGTTGGGGCTAGACAATTATGCGATCGCTGTTTTATTATGTCTGTAGTTAGATTTTTCGCGAACCTAAGCGGAGGCAAAAACCCCAGGGGGTTCACGAAAATCGCCAGAACCTCGACAAATGAATAGTTTCAACGTTTCAATCTTTGGAAAAGATGTCGGAGTCGGGAAATTTTGAGGGCTGAAATGAACCTAATTTTGAGGTTCACGAAAATCGGTTCTAGAATTCCCTCCCAGACTCAGTTTCAATCGGCGGA # Right flank : CACGGTTTTCAGAACCTTTTTTCAGGGTGCAAGCCTTGCACCCCTACAGATGTTTATTTTAAACTTGTGGGTAACGCATTCCAAAACGGTTGTTGTGAACCCTCACGAGTTGTATTAGTTCCGGTATACAAATCCCCCTTGAGTTCCTGATAATAACTATCATCAAGGAAATTCACATTTAACCCCGCTACAACCAACCGTCTTTTAAAATCTTCCTGTGCATAATCTCGCCCATCAATTAACGCTCCCCGAGGATTGGGTGCCAACAATTCCCCATTGACAGAAACCACATTAATTAAATTAGGCCACCAAGCATACCCACTATATCCAAATAATACCGGAACTTCTACAATTTGATCCTCATCGAGATTCAATTCTCGCTTCAGTTTCTTTAACAACGGATCAATTTTTTCTCGCTGTAACTGTAGATTGTGCTGCACCAATAACCGATTATTCAAAGCCGCCCTGACAGTTGTTTGGGTACTCAAACCCCGATTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAAGCTAAATTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 5196-6548 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZM01000059.1 Lyngbya aestuarii BL J laest3.contig.58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 5196 37 100.0 42 ..................................... TATGACCTTGCCCATTGCTGCATACAACTTAGTGTAAAACTG 5275 37 100.0 35 ..................................... ATTGAGCAAATAGAGGGACAGAAAAGACAAGCAGA 5347 37 100.0 33 ..................................... AAGCGACAAGTCTATCTAGGGAAATCAATTCCA 5417 37 97.3 34 ..........T.......................... ACAGATGACCCTGAAGGCAGTAGGTGCAACCCAA 5488 37 100.0 35 ..................................... TAAAGAAACGTACTCAGAAATCAAAGCAGTTTGTT 5560 37 100.0 33 ..................................... CTGATCGATGCCTTTGAAGAAATCGAAAAACGA 5630 37 100.0 34 ..................................... AAAAGATGTGATTTGTTTCCCTCTGTTCTGAAGG 5701 37 100.0 43 ..................................... ATTGCAAGCTGCATCAATTACCAGGGCTGCTAACTTCACCAAG 5781 37 100.0 33 ..................................... TCTGAAATTTACGGATATGATGATTTATATTTA 5851 37 100.0 38 ..................................... CCCTTGCGGGGGTGGGATGGCACTTTCATTCGTCAGAT 5926 37 100.0 34 ..................................... TACTTCAATGAGTTCGCCTATATTGATATTAGTT 5997 37 100.0 35 ..................................... AGACGTAGTTAGGAACGGATAATGAAAAATAATAA 6069 37 100.0 39 ..................................... GCTTAGATGCTCGTATATTAAATGCTGTTTGTAAGCCGC 6145 37 100.0 40 ..................................... ACCAACCGCAGACTTTAAAGCACCTTCTCTGAAAGAAATT 6222 37 100.0 39 ..................................... TAGAAGCCCGTGTAAAGGGAGCCGAGGAGTTAGTAGAAA 6298 37 100.0 34 ..................................... TAAGCAACTGCCTTCAGATATGCGTGGCGACATT 6369 37 100.0 35 ..................................... CATCCGCCATCTTCTTCGGCTTGATCTTCCCCCGC 6441 37 100.0 34 ..................................... GTAAATATCGCTGCTTTCTCTTAAACATTCAGGA 6512 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 19 37 99.9 36 CTCGAAATAACCTATAATCCCTATTAGGGATTGAAAC # Left flank : AGTAATTCGTTCGGGGTTTGTCTGGGAAGACGGAGAGTTGGTTTGAGTTGAACGAGGAGTACAGCTTACTGCCAAAAACCAGCACAAACAGAATAAACTGATCAGGTGTAAGATAGACTGACCTCGACGACGGGGAAACCATCCAGACTGAAGGGTTTGATTTAGAGATCTTGCAAACATTGGCTTTTTGATGTTCTCAATTCTGAACCTTCGATAATAGCGGATAAATGTCTCTGTCTTCTCTTGATCTACAGGCGACTTTACATCGTTTTTTGCGCCCGAGGGTAGGTGTAGAATTTTGATAATGGTTTTTAAGCGGGCGATCGCTGATGGGGTCTGGGTTTGCGGTCGATCTGAAAATAGAGGGGTGGGCGCATCCCTCTGTGTAAGGGTTTCAGCGTTTTTGACAGATTTGAGATGATCCGGTATTATAGTTTTAGTCGCACCTGGCGCAACTGCACCTCGAAAACTGAATATGGTAAGGGTTTCAGGATGCCGCT # Right flank : CAGAAAACAAAGTTCTAGCCCAGGCGATCACGATGCTTAAAACCACATATAACTAGAGCGCATGAGCTGAAGTTTTGTATTAATATTGTTGCTAAGTCGATGGATTACTCAGTTTAAAGATGGATGGATGAAACGAGCAGTGACAAAATCTTCATTCAATATTTAGAGCAAGAGCCAGAAACAAACGAACTTGCAAATCGGCCACAGTCAAATTAGTGGCTTAAAGAAGCCCTAGCCAAGTCTCAAGCGAGAGTTAAAGAATTAGAGTCTTTGGGCTAACTTAAAAAGCTTCACCAAATTCTTCACCAATTTTTACTCAATACTATCTGCAAATTTCCAGAAAACAGGGGTTTAAGAGACTATGATTTCAGTCTAAGCGACTAAAGTAGAGTCCCGTCTGACATCTTCAACTTGATCAATAAAAGCTTTAACCATCGCTAAGTCTGGGTGAGCATATCGTTTGTCAGTGAGGTGGTCGTAGGCTTCCCATTCTTGAGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGAAATAACCTATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 10491-12112 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZM01000072.1 Lyngbya aestuarii BL J laest3.contig.71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================== ================== 10491 32 100.0 49 ................................ TTACCGCCAAAACCCATAACTCAACAGAGTCGTAGAACCCTGTAGCCCT 10572 32 100.0 42 ................................ ACTGGCTAGCGTCAAAGCAGACCGCACCTTATTCAGGGCCCT 10646 32 100.0 39 ................................ CAATTCAGCTCTCAGAGACAATCTATAGGATTCATCCCT 10717 32 100.0 40 ................................ TCACCTGGGAATCCGATGTTCCCAAACTCAGGAGCACCCT 10789 32 100.0 49 ................................ ATACCTGGGAGGCATCCAATTCATGAGAAAAATTACACAAAACGACCCT 10870 32 100.0 39 ................................ CCATACAACAAGCTGACGCATTGCAAGTTCTATGGCCCT 10941 32 100.0 51 ................................ CTTGTCTTCAAATTCTTGAATAGCTTGCAAGCTAACTGCCTGTGTTGCCCT 11024 32 100.0 42 ................................ CACCGTCAGCAAAAACAGAACCGGAACTGACAAAATCACCCT 11098 32 100.0 39 ................................ TGTCCAGATCGCATTGTTAATAGAATCTTGTGTAACCCT 11169 32 100.0 42 ................................ CGAATGTAAACTTGTACGTTTCCGCTTCCCCTTGGGAGCCCT 11243 32 100.0 48 ................................ TCATTGTAGTCCTTTCTGGGTAGTAATACCCGGTTGTTCTTCATCCCG 11323 32 100.0 45 ................................ AGTCTGGGCTATGCCCTTAGCAAGCACCAAGCCGATGCGACCCCG 11400 32 100.0 46 ................................ CTGCGTTCTCTGCAATTGCAACAGATAACGGAAAACACACAGCCCG 11478 32 100.0 41 ................................ AATGTCACTTCGTCGGTTAAAAGCTTTTTTAGGAAATCCCG 11551 32 100.0 44 ................................ CCCGTTGATGGTGCAAGGATTATTGAAAATAGTGCAGGGGCCCG 11627 32 100.0 42 ................................ AAGATAAGTTATTAAATTGGCAGTCGGATGAGTGGTTGCCCG 11701 32 100.0 41 ................................ TTCAAAAATGACTCAAACTCAGACGGGTTGAAGTTTACCCG 11774 32 100.0 39 ................................ CTTCGGGGCAGAGGTCATAAGCTTCTACGATTTCGCCCG 11845 32 100.0 48 ................................ AACGGGTTCTTCTCTGCGGAAATAGCAAAACAGAAGCAATATGGCCCG 11925 32 100.0 48 ................................ ATCCGAATAGATCGGATAATCTACTGTTATCAACTTGATAGTATCCCG 12005 32 100.0 44 ................................ CCCAATCTTATGATTAGGCGACTTACCATTTTTGCGCTTTCCCG 12081 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================================== ================== 22 32 100.0 44 ACCGCCTGGGTTAAAGCGGATTAGTTGGAAAC # Left flank : GCCTTTGAGTTCTCGGTTGGTTTTTTCTCCCGAGTTTGAACGGTCGGTAGAACGCTCTCAAATACAGCCGGATCGCCTTTTGACTCTCAATGAACGTTTGGATGATTTGAGTCGATATCTCGATACTGATGGACGGGAAAACCTGCGGAGGTTGGATTTTAAAGCCCTGAAAGGGAAGCCTTTTGCTGACTCGACTCACGAGTGCGATGTTTGGGGAGATTCCGGCGATCGCATTTTTGGTCACTATCTCGCCGAGGGTCGCTATCTGTGCGATCGCTTAGGGGGCCATCTTTGATTTTGGCTTTGACTGGCTTTTGCGAGGCTCGATCAAATTGGGTTCAAACCCGCATTCTCTCGTTGTGAGCCTCGATACCCTTGCTGGTCTGGGTTTCAGCGTTTTTGAACGGAGTTGAGGAGGAGGATTTTGTCTATTTTTTTGACGCCCTCGATTTTGGGGTCTACAATATCGATTGTGCAAGGGTTCTATAACCTAGCCCCCT # Right flank : CTCGTAGTCGTCGGCGCATCAGCCGCGGTTCAGCCCCTATCGACCCGAACATCTGGGTTAAAGCGGAATAATAACCAACAAAAAAGGAGAGGAAATCAACACCTCTCCTATTATTATTTTGTATTGAAAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCTCACCGGGGAATTTAGGCAGATCAAACAGATTACTGGTAACTGAAATAGAAGATCCCCCCCTGTCCCCCTTAAAAAGAGGAGTGTTAAAAGTCCTCCTTTCAAAGGGGGATTCAGGGGGATTATTTGGGGAATAATGGGCGATGCCTCACAACTACGAAGTTTGGGGCCACAACTTTTGAAACAGTTTTTGTTCGGAATTGAGAAAGTGTAGTAATTCGTCAGAATCTTGAGAATTATCGGGAAAAAAGATGAAAAACTCTAAAAATTGAGGGGTATTCTTGGGGAGAGGTTTTTGGGGATTGTTGGGATCTTTCTTCAAAACCACAAGGGGATACATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGCCTGGGTTAAAGCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 99921-103104 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUZM01000008.1 Lyngbya aestuarii BL J laest3.contig.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 99921 37 100.0 36 ..................................... GGGATTTAAGGCCCAAGCCAAAGCTAAGGCTTTCAC 99994 37 100.0 35 ..................................... CTTTTCAAAAGCAACTCCAGTATCAGAAAATAATT 100066 37 100.0 36 ..................................... CAGAAGCAGCGCAAGGTACATCAATCGCCGCTCAAA 100139 37 100.0 40 ..................................... AGCGCATCGCGGACAGCCGCCGACATTCTCAGGCAGTATC 100216 37 100.0 32 ..................................... GTTGGTTGCTGTTCAACCCAGTAACGAAAAAG 100285 37 100.0 34 ..................................... TTTCTTGAGTGTGCGAAAAACTTACAATTGAAGG 100356 37 100.0 35 ..................................... CAACCGATTTAATATCATTCTTGATATCTAAAATT 100428 37 100.0 34 ..................................... GAGCAGGTATCACCTTCAAAACAAATGATCAGAG 100499 37 100.0 43 ..................................... TTGAGTTATTAGATTTGGAACAGCTTCATGGCGTGGTCTGTAT 100579 37 100.0 35 ..................................... CGAATATTTGCCAATAATTAGGATCATGTGACCTC 100651 37 100.0 32 ..................................... TCTCATAGGTGGTGGTGATGGTGGAATATTTC 100720 37 100.0 37 ..................................... TTTTTCCAATAAAAAGGATCGGTAACAACCGCTCTAA 100794 37 100.0 37 ..................................... CCAGATGCTCACGAAACCATCAACAACCTGAAATCTC 100868 37 100.0 35 ..................................... TTTGATTTTTTCAAGCATCACTTCAAATTCACTAA 100940 37 100.0 33 ..................................... CCGGTATTGATGACTAGAGGGGTAGTGATAATC 101010 37 100.0 37 ..................................... TTACCTGTATTTCTTTACAATGCAAGTGCTTCAGTAG 101084 37 100.0 49 ..................................... ACATCTTTTACTTCTTGTTTGGCCCAGATGAAGCCTATAAAGCACCTAA 101170 37 100.0 33 ..................................... GTATTTTTCTCTACCAAAATCCGCCAACAAAAC 101240 37 100.0 36 ..................................... AACGAGAATTTTGCCAGATACTCAAACAACAATATT 101313 37 100.0 35 ..................................... TTGACCCCGATACAATCACTTATGAAGAACTTCGA 101385 37 100.0 36 ..................................... GGAACACTTTTTATAGGTCTGTGGATAATGTGTTTG 101458 37 100.0 48 ..................................... TAATATTTGTCTGGAATATCAGTCAATAAAACGTGGAGTTAGCAAAAC 101543 37 100.0 37 ..................................... TCAGAAAAACCCCGCAAATCTAATCATAGTTTCACAG 101617 37 100.0 35 ..................................... TAATCAGAATGACACAAAATACTTCAAGGTGTAAC 101689 37 100.0 35 ..................................... CTTATAGATTCCTCCTTGGCTCTGAGTTCTTGCTC 101761 37 100.0 36 ..................................... AGACTATACTCGCGATTCTTACGAAGGGAAAAAACT 101834 37 100.0 35 ..................................... ATACTTTTGATTGGGATAGAGGAATGAGGATTACA 101906 37 100.0 33 ..................................... AATCAGTTTGTCTTGTGGTGTCAAAAGTATGAG 101976 37 100.0 35 ..................................... TCTTTAGGCGGAGATAAGTATATAGGAGTTAAAAT 102048 37 100.0 32 ..................................... CAGACGGGCGGCTTCTGATTCCCTTGAACTCC 102117 37 100.0 42 ..................................... GATGAAAGTGCAAAACCAACACCCGCCGCCGAGATTGCACAA 102196 37 100.0 34 ..................................... ATCGATGCCTTCAACAAAACCCCAGTAAGATAAT 102267 37 100.0 34 ..................................... TAAACTTTAGTAACTCAAATCTTGCGTAACCCTT 102338 37 100.0 36 ..................................... ATCTACAGACAATACTAATCTCGCCTTGATGATATT 102411 37 100.0 36 ..................................... CTGCTATTTCATCAAAATTGCGACGTAAATAAACAA 102484 37 100.0 34 ..................................... TTTGATCCACGCGGGGAGGTTTTTTCATACTCTC 102555 37 100.0 39 ..................................... AACTGATCAAGGCTGAGGCGAAAGTTGTCAACAACAAAC 102631 37 100.0 43 ..................................... TGGCTAGAATCAAAGGTAGAGATGCCGCTACGCGATTTCTACG 102711 37 100.0 34 ..................................... TCTTTTTTGTATAGCTCTAGTAGCCTTGTATTTT 102782 37 97.3 33 ..........C.......................... TTATTACTAATGAACAAAATTGCAATTGTGGGT 102852 37 97.3 36 ..........C.......................... GTAGAAACAAACGCTGTTACCGTTGTTAGTAGCAGG 102925 37 97.3 35 ..........C.......................... ACGGATCACAAGCAGTAGGAATTGTTGCGGTAAGA 102997 37 97.3 34 ..........C.......................... GCTTCATTAAAATTTCCGCAGCGCCATCTAGAGT 103068 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 44 37 99.8 36 GTTGAAATCATCTATAATCCCTATGAGGGATTGAAAC # Left flank : TGTTTGTTGTAATTAGCTACGATATTTCTGAAGATAAACGCCGCACCAAAATTCATAGTATTCTCAAATCCTATGGACAATGGATACAATATAGTGTGTTTGAGTGCGATTTGACGAAAACTCAATACGCGAAGTTACGTCGTCGTTTGAGTAAACAAATTAATGCGGAGAAAGACAGTATTCGGTTTTATTTTCTCTGTGAGTGCTGTCATGGTAAGGTGGAACGGATTGGCGGTGAAATGCCTCGGGATTGTTCGATTTTTCTGGTATGATGCGCCCCCAGGGGGGTGTAGAAATCAGGTGTCGCGACAAAATGGCTGTAAGTCTTGTTCTGTGTAGATTTGAACGGTCTTGGTTGTCTAAGGGGTGGGCGCACCCCATCTGGTAAGGGTTTCAGCAGTTTTGACAGGATCGCGATGATCACCTATAATTTTATAAAGCCTAACCGGGCGCAAACGAACCTTGAAAACTTAATCTGTTGTGCTTTTGAGGCGACCGCA # Right flank : CAGTTTTTGGTTGGCTTAAAATAGGGGAATTTAAGCAGAATTCTCCAACAATTCTAAAAGTTCTGCTTCTGATAACTGCGAAATTCCTAATTCTTGGGCTTTTGTCAGTTTAGAACCCGCATCTTCTCCGACAACGACATAATCAGTTTTAGAACTGACTGAACTCGTTACTTTTCCCCCAGCAGTTTGAATTAATTTCTTGGCTTCATCTCGTTTTAAATTGGGTAATGTTCCAGTCAGTACAAAGGTTTTACCCGATAACTTTAAGTCTTGCTTTTCTGATAAACTCTCAGGTGTAGACGGTTGAGACGCTAAATTTAATCCCTGTTGTTTTAACCGTTCAATTAAAGCTTGATTCGCCGGAACGTTAAACCACTGATGAACCGCCACTGCAATTTCCACCCCAATTCCATGAACCCCTTCAATATCTGCGGGTGTAGAGTTGGCTAACTGTTCCACTGTTGAAAACTTTTGGGTTAACAACTCTGCATTGACACTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCATCTATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA //