Array 1 47306-45752 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAJF01000006.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22910, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 47305 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 47239 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 47173 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 47107 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 47041 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 46975 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 46909 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 46843 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 46777 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 46711 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 46645 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 46579 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 46513 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 46447 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 46381 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 46315 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 46249 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 46183 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 46117 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 46051 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 45985 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTCCTTTACA 45919 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 45853 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 45787 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //