Array 1 4333866-4332389 **** Predicted by CRISPRDetect 2.4 *** >NC_021820.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 4333865 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 4333804 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 4333742 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 4333681 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 4333620 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 4333559 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 4333498 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 4333437 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4333376 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 4333315 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 4333254 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 4333193 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 4333132 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 4333070 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 4332967 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 4332906 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 4332845 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 4332784 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 4332723 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 4332662 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 4332601 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 4332540 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 4332479 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 4332418 29 96.6 0 A............................ | A [4332391] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4351613-4349998 **** Predicted by CRISPRDetect 2.4 *** >NC_021820.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4351612 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 4351551 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 4351490 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 4351429 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 4351368 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 4351307 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 4351246 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 4351185 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 4351124 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 4351063 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 4351002 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 4350941 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 4350880 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 4350819 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 4350758 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 4350697 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 4350636 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 4350575 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 4350513 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 4350452 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 4350391 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 4350330 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 4350269 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 4350208 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 4350147 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4350086 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4350025 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //