Array 1 421-570 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEK01000214.1 Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 Scaffold214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421 29 96.6 32 ............................C GGCCGTGCCGGTATTTTAACCTGCTTGACAAG 482 29 100.0 32 ............................. ATCACCAACTGGCCAGTTGATAACGGCGCTCC 543 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATCAACAGGAAAAATTATAGAGCCAAAAAAGTTCTCTCTTTTTTAGTACCTATTATTGATTTTTGTTGTCACCATTATCATCAAAATCAAAGCTTTGTTCAGATTCAGAATTATCATCTGTATTATTATCAGCATTTAACTCATCAGCAATTTCAGCTGTATCGAGCAGTGAATTTAACGAGGTAGGTTTGCTATCTGAACATGGCTCCAACTCATTGTTTGGACTAATCAAGTTAGAGATTTTTTCTGGCAATAGATCAACTTTAGCATCAATTTGTTTTATCAAATCAATAAGCTGGTCATGATTATCAACTTGCAGACGCAGGTCTTGTACTTCTTTAGTAAGCGAAGTAATCAATTGCTTATCTGACTGTTTCTTAGCCTTCTCCAACTTAAAACGCTCAACAATTGCACGTTTAGG # Right flank : AAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTCGTAAATTGCAATAATAAATTGA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13416-10680 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEK01000015.1 Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 Scaffold15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13415 30 100.0 36 .............................. TCAACACCGCCATGTTTCATACATTTATGAACAAAA 13349 30 100.0 35 .............................. TCGTGTAGCTTAATCCAAGATCAGCTTTGCCAGCT 13284 30 100.0 36 .............................. GAAGTGATTCCAACCAGAACCAATCTGTTTGAACAT 13218 30 100.0 36 .............................. ATTAATAGAAGAATGATACTTCTTTACCAAATCCTT 13152 30 100.0 37 .............................. ATATTGGCGGTCTTTTTAAGGCAAAAAATTAATTTGA 13085 30 100.0 35 .............................. ACAGTTATGGTGGCTATTATGTCTATTGTGTCTAT 13020 30 100.0 37 .............................. TAGCTATGGTATAGTATATATAGTTAAAAAAGAAGAA 12953 30 100.0 36 .............................. TGACGTAGGAACTAGGTATGTTAGCTGTAAAAGCAA 12887 30 100.0 35 .............................. ATCTACAATAGTAGCTGGGATAACAAGACGTATAG 12822 30 100.0 37 .............................. AATGTATACCAGTCTATTGGTGGCATTGCTCGTACAG 12755 30 100.0 35 .............................. TTAATTGCAAGATTTACTCTTGTGCGACTTTCACC 12690 30 100.0 36 .............................. AAATATTGGTGTTCCAATTCTGGGACTGGCTTAATT 12624 30 100.0 35 .............................. GGCTAAAAGCTCGAAAGAAGTCGAAGGACTAACCA 12559 30 100.0 39 .............................. TTGCATAAAATGCGTCTCTTAATCTTGTCTTTGATTCAG 12490 30 100.0 36 .............................. TATTTTTGTATGGAAAAAGTAAGCGATTTAAATAGC 12424 30 100.0 36 .............................. GCATAAATAGTAAATTCTTTCATTTTTTGTACCTCG 12358 30 100.0 35 .............................. TCAACAAGCTTGATGGAGTTTAAATCCCGACCACC 12293 30 100.0 36 .............................. AAGCAAAATTGCAAAGTATGGTTACCAAAATCTTTA 12227 30 100.0 36 .............................. ACAACTAACGCTGCAAACAACGCACTAAGAAAACAA 12161 30 100.0 36 .............................. CTATCAAAGGCTTTACTCATGTTGGCTCTGGTCTGC 12095 30 100.0 37 .............................. CCAATCAAATCATCATTAAGGAAATCTGCTGCAAACG 12028 30 100.0 35 .............................. ATTTAGGACTGTCGTTGATCATCATCGTTAGTCTG 11963 30 100.0 35 .............................. CATTAATAGCCGTTGTCGTCTTACTTCTAAAGTGT 11898 30 100.0 36 .............................. TTCTCTGGCTCGGTAGGCTGTGTTTGTGCCGTAGTT 11832 30 100.0 36 .............................. TGCTATAAAAAGCATCTCTTAATCGTGTTTTTGATT 11766 30 100.0 36 .............................. TGTAAGTGCTTGGTATTAATACCAGCAATGACGTAA 11700 29 96.7 37 ......................-....... TCATGGCTTAAAATCCTAATAGTACGAGTATTGTTAA 11634 30 100.0 36 .............................. CTATTCCGACTTGACCCAGATGAACTCACTAACCAC 11568 30 100.0 36 .............................. CAAAAATGGAACGGGTGGGAACGGTTTAATGAAATT 11502 30 100.0 36 .............................. TGAAATACTCTGAATCATGTTTAGCTTGATCGCCTG 11436 30 100.0 37 .............................. AGTGATTTAAGCTTGACTCAAGGTGATGATAAGGACG 11369 30 100.0 36 .............................. GTATTCCTGTGGTACTGATTTGGTAGTTCAGCCTAT 11303 30 100.0 36 .............................. GATTATGCGTACGGCAATAACTCATGGCTACAAGTC 11237 30 100.0 36 .............................. TATGGCGAAAAATTAGAAGAAAATTTTGTCAAAATT 11171 30 100.0 35 .............................. TCTATCTATATCCTTTCTTTTGGTCGTTGGACTTT 11106 30 100.0 36 .............................. AGATTTGTGGGCGCTTTAATATTGAAAATGCAGAAG 11040 30 100.0 36 .............................. AATTCACGATTATATACTTCATCAGGTGCAAGACTA 10974 30 100.0 35 .............................. TTTCAAAAAAAGTAGAAAACTACAAAGAGCTTGCT 10909 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 10843 30 90.0 38 ............T.............G..T TTCTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 10775 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 10709 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ======================================= ================== 42 30 98.7 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //