Array 1 8189-9479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCZ010000035.1 Labrenzia aggregata strain PHM038 NODE_35_length_41558_cov_44.976, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8189 36 100.0 30 .................................... TGTAAAAGAGGAGATGGACTAACCACCCAT 8255 36 100.0 30 .................................... AAGTCAATGTGTAGGTCGATGTCGTCTGCC 8321 36 100.0 30 .................................... AAGTCGGGGTCGTGATCGCATTTTGAAAAC 8387 36 100.0 31 .................................... CAGGGCTTTGAACGCCGGAATTCGCCCCAAA 8454 36 100.0 30 .................................... GACAGCTCTTGGTGCGGCATTGCAACAGCT 8520 36 100.0 30 .................................... GCCAGGATGCCTTGGGCAATGACAGTGCCG 8586 36 100.0 30 .................................... TCTTTGCATAGGATGGAAGTCTTTCTCTTT 8652 36 100.0 30 .................................... AGGTCATGGTCATGCCCTGATCGTGTCTGA 8718 36 100.0 30 .................................... CTCGTCGATATGGATTCGTATTGGGAAAAG 8784 36 100.0 30 .................................... CGGGAAGCCGCGGACACGCATCCTGATTTG 8850 36 100.0 30 .................................... GGCGCGCGGTCGGACACTTCGCCTCGCCTA 8916 36 100.0 30 .................................... AGGATCTTTCCATCGGCGATCAGATTGCCG 8982 36 100.0 30 .................................... GCAGGCGTCACACTTCCAGAACGGCAGGTC 9048 36 100.0 30 .................................... CGACAGCATCGTCGCTTGACCTGAGCGTCA 9114 36 100.0 30 .................................... CATGCGCCGCGACATGCTCATCCAGATGGG 9180 36 100.0 30 .................................... GGGCGCCGGCGCCGTACCTGTCGCGTGCGC 9246 36 100.0 31 .................................... CAGGGCTCTGAACGCCTGTATTTCCGCCGAA 9313 36 100.0 30 .................................... TCACGGTTAGTGTGTATCCGATCGTGTTCA 9379 36 100.0 30 .................................... TCCTCCGGCTTCGATTCCATTTCAGGCTCG 9445 35 88.9 0 .........................-....TA...T | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.4 30 AGCTTAGCCGCTTGGAGATCGTGGGCCAACCGCAAC # Left flank : AGCACTGTCGGCGGCGCGTTGTTTTGCCGGGGAGGCGCAAAAGCTGGACCTGCCGCGACGGACACTGCCTCTGGAGGCGTGACATGGGCACGCAGCTCCCGGCACTCAGCGGATATCGGATGATGTGGCTTTACGTGATGTTCGATCTTCCAGTGGTGACAAAGGCCGAACGCAAGTCCGCCTCGAAATTCCGTTTGTTCCTGCTTGATGAAGGTTTTGAGATGGCTCAGTTTTCGGTCTATCTTCGCTTTGCGGAAAGCAAGGAAGCCGCCGAGGTTTATATCGGCAAGGTGCGGGCCGCGTTACCGGGCAAGGGCAAAGTGCACATCGTCACAATCACCGACCGGCAATACGGAAATGCACAAATCTTCACGGGACGAAAACATGAACACAAGCCGAAAAATCCGGACCAACTTGTTCTTTTCTAATTCTGCGACGGCTGTTTTCACTGAGTTCCAGAAAAAAAAGCCCCGGAAAATCCGGGGCTTGGCAGAATATCG # Right flank : TGGTGCGAGGTTACCCATCGGTACAAAGGCAAGAGAAACCAGTTTGAGATCGTCGAAAACCTCGAAGCGGCCCTGGAGCAGTTCAGGAGCGTGACGGCGGAGCTGGAGAGCTAGGCTTTACGCAATCGAGACATCAGGCAGTTTGTCGATCTCGCGTTTCCTGACGGCGATTGTAACATCGCCGTAGTCGTCGCCGGCCGTTCGTCCGGCGTGGCCTTGGATGGCGTCTGCGATGCGATCTGACAACCCATGAATCCTCGCGTTCGTCTTGAACGCGTGTCGGAAACCGTGGAGCGGCGCGACTTCCGCCGGAACCAGGCCGGCACCCTTGATCCACTTGGCGACGCGGTTCGAGATTGTTTCTGCGGATTTGACCGGGTCCTGCTTGCCTTCCCGCTTTGGGTAGAACAGGGGGCCTTGCTCGGTATCCTCCACGAATTTGAGGAAGCCTTGATCGATCAGCTGACGATGCAGCGGCACGTCCCGATAATGGCCGGTCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCTTAGCCGCTTGGAGATCGTGGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.60,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 25576-24430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCZ010000037.1 Labrenzia aggregata strain PHM038 NODE_37_length_33541_cov_47.8975, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 25575 31 100.0 34 ............................... CCGTTCCCCATCCTGCAATCGTGAATGTCGCGGT 25510 31 100.0 35 ............................... CCGATGGCGTCGAACTGATCGCGCATATCGGCGCG 25444 31 100.0 34 ............................... AGCCACTGCACCATGAAGGCGATATTCGAGTGCG 25379 31 100.0 36 ............................... ACATTTCCGCCGAGGACGAATGTCCGGCCTGCGTTG 25312 31 100.0 34 ............................... TCCTTAGCAAGCTCTTCAAGAGCATCTGCAATGC 25247 31 100.0 34 ............................... GGTTTCCCCAATAGGTATCCGCTCCGGTGACGGA 25182 31 100.0 35 ............................... CAAAAAGGACGGGCAGCGGTAAGGCCGCCCGCCAG 25116 31 100.0 35 ............................... GCTGCCTGTGGCTCCCGTGCAGCAAGTGCTGGAGG 25050 31 100.0 35 ............................... CAGATACTTCCACGCCGCCAGCTCGTCACACCATC 24984 31 100.0 33 ............................... AATATCTCGTATCTGTGGTAAGCGCTGCTTAGC 24920 31 100.0 33 ............................... CTCTTGCTTGGGCCAGAGCTTGAACGGGACGTA 24856 31 100.0 33 ............................... TATTTCGGCGAGCTGAGCGCGGAAGATCGCCGC 24792 31 100.0 35 ............................... CCAATTTACCGTCTATAGGGGTGGTTTTTGCCCTG 24726 31 100.0 34 ............................... CACCACGTCAGGGCCTCGCAGCCGCCGGCGATAT 24661 31 100.0 35 ............................... AACCCGGGATGTCGGTATCCCATCCGCAACAGGGC 24595 31 90.3 36 ...........G........C..A....... GGGGCTAAGGGCTTTCGCAATGCCAATGCGCCAGGG 24528 31 90.3 35 ........C....C.........A....... GGATACGCCCGCGTCAGAACCGAAGATCAAAATCT 24462 31 90.3 0 ........C..G...........A....... | GC [24447] ========== ====== ====== ====== =============================== ==================================== ================== 18 31 98.4 35 GTCGCCCCTTCACGGGGGCGTGGGTCGAAAC # Left flank : AAATAGGAGAAGCGGTATGCTGGTGCTCGTGACATACGATGTACGCACCTCTGAGGGGGACGGAGCCCGCCGTTTGCGGGCGGTTGCCAAGGCCTGCCGCGACTATGGACAACGGGTGCAATATTCCGTCTTCGAGATCGAGGTGGACCCGGCGCAATGGGCAAAACTGAAGGCGCGGCTGGAACGCGTGATCGATCCGGATCACGACAGCCTGCGCTATTACCATCTCGGGTCGAACTGGCGGCGCAAGGTGGAGCATGTGGGGGCCAAGCCCGCGACGGACCTTGGCGGCACGCTGATCGTCTGAACTGCGGCGGCGTTTGCGCGAACCCCAAGCGTGCCGGAAAACCCCGGCCGGTTCGCGCGACGGCCGGATCTTTGAAATTCAAGAGCTTTTTCCGGACGTCGATCCTGGAGAGATCGAGAAACGGCCTTGTCGCATCCGGTTCGCGCTGCCGTCGGCCTTTTCTCAACCCCCGCAACAGGATAGCGTCCATACA # Right flank : AACTGCGGAGTCGGGGCGATTGGCAAGAACACAGCGTTGCCCCCGCAGCGGGGACGTAACTTCGCTGCGTCTTGAGATCGCGATACGCCATCGGACGTTCGTTTCCAGTTGATCGGGTCATCAACTGCACGGCATTGAGCGGGCTTCGATCCGCCACTACGCTTCGTACATAGCTTCGAGCGAGGACGTCTGTGGTTCGAAGGTGAGACCTGCTGGCCCTAACAAGTTCTCGTGTTGAATGAAATGGGATGGTGTAACGCTTGTCAGAACCGCTTGCAGGTGCACTGGTCGTTGAGCCGAGGAGGCGAATAAGCATGTGCGTTGGTTCTTGCGCGCAGTTCGAATTGGGAAGTGGTACCACTTCCTCTATCTTGCCGTCCTACCCACTTCCAAACTTTTCCAAACAAATACCTAGTTCTTATACAATATAGGTCATACATATCTTTTTTCGGTCAATCTTCGCCAAATACCGCCGATGATAGCCATTCTCATCCGATTAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTTCACGGGGGCGTGGGTCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //