Array 1 88343-90029 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGK01000023.1 Paenibacillus thiaminolyticus strain NRRL B-4156 Ga0138519_123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 88343 32 100.0 35 ................................ CCTTTCGGGAATACGATCCTTCCCCCTGCAGCTGC 88410 32 100.0 33 ................................ GGTCATGTATCTTTTTTCGATGATCAACCTTTC 88475 32 100.0 34 ................................ CTAGTGTTTATGATTACAGTGCGAGGAGGAAGAG 88541 32 100.0 34 ................................ GATCATAACTTCCTGTGCTGTTTGGCTCATTTTG 88607 32 100.0 33 ................................ ATATAAACAACTCGCAAACAAGACCGCGTTGTT 88672 32 100.0 34 ................................ GATAATGATAAAGCCTTGGAGTAATCCGGGGCTT 88738 32 100.0 34 ................................ ATCAACGTGGACATCGGGACCGGCCAAAACCATT 88804 32 100.0 35 ................................ AAGATGGTCGGTTGGAAAAATAAAAGGGGGGTCGG 88871 32 100.0 33 ................................ CTTGCCTTGTTTGTGATAGTAGCCATCCAGCAG 88936 32 100.0 35 ................................ CTGCTTGAAGCTGACATATCCTTTCCCGCAGAGCC 89003 32 100.0 33 ................................ GAAGTATGCCGAACGTTATAAAATTCTCCAGGA 89068 32 100.0 33 ................................ ACTTGAAAGGTATATGGCAGGCTCAGGTAATAA 89133 32 100.0 34 ................................ CGTCAAGAAATAAAAGTGCCGCCCCCGAAGGAGC 89199 32 100.0 34 ................................ TATTACCTTAACTCTGATGCGTTTTTGTATTGCC 89265 32 100.0 33 ................................ ATCCAGAGGTTTAGGCTGTCCGTGATGGCCTGA 89330 32 100.0 35 ................................ GCATCTTCGTTAGGGTGGTCGGCCGGAGCTCCAGC 89397 32 100.0 33 ................................ CCATCCGGACAAACTGGTTATCGAACGGGTTCG 89462 32 100.0 34 ................................ TACGCGGACGGTAGCCGCGCACTGTGGTTCGATG 89528 32 100.0 35 ................................ CCGGGCGTGAGCATCAAACGTGGCGATGGGGCAAT 89595 32 100.0 36 ................................ CTGCGAGGGAGATTGAAATTTGGAGGTGCCAAGCAC 89663 32 100.0 34 ................................ TTGCGATCGTGTGGCTGCTGTTTATTGTCCGTGT 89729 32 96.9 35 ............A................... GGAAATGAATGGAGTGAAGAATATGGACAGTAGAA 89796 32 96.9 37 ............A................... ACCAGCGGTGGCCGGGATGACATCAGCGCAACTCAAA 89865 32 93.8 35 .........C..A................... CCCATAACCCAATGCCATTTGCCGTGCTTCGTCTT 89932 32 93.8 34 ...........TT................... CGTGAACTGTAACCTGCACGGGTCTGAATTCCTT 89998 32 87.5 0 .....T.T......A......C.......... | ========== ====== ====== ====== ================================ ===================================== ================== 26 32 98.8 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GATTGGGGGAGTTGCGGTGACCTCGTTCGAACGGGTGGAGCCTTGGGACAGGAGTCCTTTTCCGATCCTGGCGGCATGGTTCGAGGATGAGGAAGCGAGTGCGGGAACGAATGGACGGGATATTTCGGGTCGAAATGGTTCGGTAACACGTTGAGCAATGACGTTGAGCAATGAAACCCTGTACGATGTGAATGAATGCACGAAGTGATGGAGCGTTGCATATACGGACTCAACAAGCACTATATTATGAAACTGCAAAATGTGGTAACTTATAGATATAGATTTAACGATAGAGAAGCCCCTCATGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATAGAATTTCTATATTTTAGGCAAAGTCCATTTTATGGTTTGTTGTAAAGTGAGAAATGACCTTCTTTAAATTGATTCTATAGCTAATTTGATTTGTTTACTCATAAGAAGAGCGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : TGTGGACCTCTCTAAGCAGTCAAGCTCACATTGAGCGTCGCATCTTGCACCGACGCATAAAAACCATTATGAAACCAAAAAAGCATCTACCCCCTTATCAAAAGATGACGTGGGGGTGGGATGCTTGTCTTTTTTATAGAACATACGTTCCCTGACAGGTTGTTGTCACTTTCTTCAATCATAATAGAATTTAGAGTATCAATACGTAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGTCTTTTCTCTGCATTGAAGCGGACTGCACTGACAAGCATTCCTATCATTGTTTGTTTGATGTGGTTGCCCCAATGGAAGTGGATTATATATGCTTCTGCGGCTTATCTTTTGCTTCATTGGAGCAAGGACTTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCCGAAGAAGTTACGTTCTGACAAGGGAAGAAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 101771-104111 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGK01000023.1 Paenibacillus thiaminolyticus strain NRRL B-4156 Ga0138519_123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 101771 32 100.0 34 ................................ ATAAATGGCGCGGACAACTTCCTCTTTGTCGTAC 101837 32 100.0 33 ................................ TTCGGTCGTCAGGCCCTCCATCGGGTTGTTTAC 101902 32 100.0 34 ................................ ACGTTAAGCCCTCCTTATTAAGAATATTTGGCTT 101968 32 100.0 34 ................................ ACGTCCATGCTGCCGCTGTGCTGGATGTCTTGCT 102034 32 100.0 36 ................................ AACGCTGGAGTACGCACGCCAACTGGTCAAAGAAAA 102102 32 100.0 34 ................................ ATTATTCGGAATTACATCCCGAGCCACTAACTGA 102168 32 100.0 36 ................................ TCGTGGTTAAGACCACACGAAAAAAAGAAGGGGACA 102236 32 100.0 32 ................................ CTCTGGCGTCATTTGCCGCTCTACAACCTTGC 102300 32 100.0 34 ................................ CGTCGATGCTCTTTGTGTCGCTGGGCATTGTGTA 102366 32 100.0 33 ................................ TTCCGGCAGGCGATCCGCCTGATGCAAAAATTA 102431 32 100.0 34 ................................ ATCTACGCGATGACACCCATTTCATTTCTATTCC 102497 32 100.0 32 ................................ GCTACGCCACACCCACGCCGTCATGTTGCTAG 102561 32 100.0 36 ................................ AGAATTTGCCACAGAACAAAATCGAAGACCTGGCAC 102629 32 100.0 35 ................................ ATTTAAAAGTGGGTGAGGGAAGACAACTAGCTGGA 102696 32 100.0 33 ................................ GTTGATAACGCTGAATCTATTATCAAGTATCAG 102761 32 100.0 33 ................................ TTAACATGGCCGAAAGGGCCGGTACCTCAATTA 102826 32 100.0 34 ................................ ACAGTTAACACAAAAGCTCAAAGGCGGGAATCAT 102892 32 100.0 34 ................................ CAGCAAGTGTAGGCATTTACGTCATCCTTCACGA 102958 32 100.0 33 ................................ TCGCGGTATATGCGGATTAGATAATCGATCGCG 103023 32 100.0 35 ................................ TGGTACTTTGATGCGCTGATCACATACATGACATT 103090 32 100.0 33 ................................ ACCATATTCTAACGATTGATACCGCAAGATACC 103155 32 100.0 35 ................................ TCTTTTGGTTTCGCCATTCCAACCACCTCGACTTT 103222 32 100.0 33 ................................ ACTTGCTGTTCATCTTGATGATCGCAAAATCGC 103287 32 100.0 35 ................................ TTGCAATCTGAAAACATACAGTGTTGGCTTACCCC 103354 32 100.0 35 ................................ ATTTATATGATGCTTGTTAGAATTATTGCGGACAG 103421 32 100.0 34 ................................ TTTATTAATTGAATCATTAATGGCAGAGGGTATT 103487 32 100.0 33 ................................ AGAATCGGATGAGCAGCTTAGAGTGCTTCCAAC 103552 32 100.0 33 ................................ CCCATGCGTGGGGCGTACATCTTCGACCACTAT 103617 32 100.0 34 ................................ AGTCCCCTGGATGGACTTTATGTAAGGGGTTTTT 103683 32 100.0 34 ................................ TTGACACAACGGTTCCCGCTACTGACACCTCTAA 103749 32 100.0 34 ................................ TCGATGCTGCTGCTTACAATCCCACGCAAGGCCT 103815 32 100.0 34 ................................ AATGCGGCGCAAAATATCAGCCATCATCATCAAC 103881 32 100.0 33 ................................ GCTAGATGCTCGTATTGATGATCAGGCAGCTTG 103946 32 100.0 33 ................................ TTCCGGCAGCCGTACGATAAGCGCAGGATGATT 104011 32 100.0 34 ................................ GAAATGCTCCGGCCAGACCTTGAGTTGATGTTCG 104077 32 84.4 0 ....................A..T.A.A...G | ACC [104099] ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.6 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTCTGGAAGTAGGTGGTATAATTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGCATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAATTCGCCAGCTTGAAGATCCAACTTATCGATATGATTGATGAAAAGGAAGACAGCCTGCGATTTTATCAATTAGGAAATAACTACAAAAGCAAGTTGGAGCATGTCGGCGTGAAGGCATCGATCGATATGGAAGGGACGCTAATCTTTTAGTGCGAATGTGTAGTGCACATGAAATCCCTGGGGGATTCGCACCATGTTTTTTCTGTATTATGGGTAATAACCATTTTGTGGTTCGTTGCGGGAGTGAAAAATGACCTAGTTTATATTGATTCTAGAGCTAATTTGATTAATTGAATCATAGTAAGAACGAAAAATGATTGTAACAATCATTTTTCGCT # Right flank : GCCCGCTTGCGAGAAAATTAACTCACAAAGTCAGCGGAGCCGCATCCCCCTATTACTGCGCCTCTGCCGCAGATTTTCCCTCTATCCTCATGCCTAACGATCACCTCCCACCTCCCTCCACCCAAAAATACAACGACAGCTTTCTCCGTACATGCACTTCTGGGCCATTGCCTACATACAATGTATCACTGCGCCGGGATTCGGCTTGCTGCGAGGAGATACCGCTAGGCGCAAGACGCAGAATAGAACGTTGTCAGACTCCTGGAGGTGGCTAGCATGACGGGTTTATTTGCTGCAATCGCCGTGTTCATCAAGCAATTGACGCTACTTGTATCCTACGTCAAGAACAATGCGTTTCCGCAACCGTTGGCGGAAGAGGATGAGATGAAGCATTTGCAGCGGATGGCGGAAGGCAATGCACAGTCGCGGAATACGCTCATTGAGCACAATCTCCGCCTGGTTGCGCACATCGTGAAGAAATTCGACAACACGGGAGAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 63987-64150 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGK01000025.1 Paenibacillus thiaminolyticus strain NRRL B-4156 Ga0138519_125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 63987 32 100.0 35 ................................ TGCTGTAGTTCCCTGACTGTATCGTCTGCGTAAAA 64054 32 96.9 33 .............A.................. CTTCTCGCCCTCGTCGATGCCGATGGGGCTGAA 64119 32 96.9 0 ........................T....... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 97.9 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AAGCCGAATCTGTATGAGTTGTTCCGGCTGCATGCGCTGGCACGCGGACAGCTTGTCGAGCGGGAAGAGGAGGCGCAGACCGTATTTTCGGTCCAGCGCGGAATCACTCCGTTCGATATGGAAGAGATTATGGGATCGTTCCTGGCTTCGTAGGGGACGGCCTCTCATTCTGAAAGTCCAGCTTCCTGATTTGGATGTTGTGCGGCCACATATTTAAAAATAGTTGCTTGTGATATACTGAAAAAGAGAAAAACTCGTGGCATGAGCAAACGAGGAAGTATCAATATATTAATAATAGAATAAGAATGCTGAAAAAACAGGTGTGAATGTGAAGCTCACATGAAATCCCAGGGGGATTCGCACCAATTTTATTGAAATATTATCCAATTAAGTTAGTGGAAACTGATTGATTGAAGCTTATTCCGATCTAATTTGCTCGCTTCCTATGAATTTTCAGTGGAAAACTGATTGAATTGTTATATCTTGTGTTATTTTTCGCT # Right flank : TCGCCAACGTCCCAGACTCATCGGGACCACAACAAAGAGCAGGAAGCCTTTCGCTTCACTGCTCTTTTTTCTGTCCTAGAATTCGATTTTAAGGCTATCTCCGTTGAAATATACGCCTTCAGAACGGGTGATCGGCAGCTTTTGTTCATCCGTGAAACATCGTTTCGCCATCTCGTAAAGTGAAGTCCTGCCTAATCCTACCGTCATTTATCGGCCTCCTTAAAGGGGAGAACAATGATTGTTTCAAAATTTTTATCTCTCGCTATCGTTGTTAAATGACCGCCATATGTTTTAACCACTTACTGAATATTTAGCAATCCGACCCCATGAAGATCAGGGCTTTGCCGTGAGTTGTTTTTGTTCAGTTCAGAAATTTCCCGGCGAGAGTTGATAACGTGTATGATTAAGGAATTATTAAAGGGCACCTACAAAGTCGGAATTCTAGCCTACAATGATGCAACTTATGCCATTGACTGGTCCGGTCAAATCTCGCCTTGAGA # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 68708-70067 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGK01000025.1 Paenibacillus thiaminolyticus strain NRRL B-4156 Ga0138519_125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 68708 32 100.0 34 ................................ TTCTTCTCTCTATTGGCCATCTTTTCACATCCTC 68774 32 100.0 35 ................................ AGACGGTAGCAGTCCAGGAAGTCCGGAAAGAATAC 68841 32 100.0 32 ................................ AGTACGGGATGATAGACACAAAATCGAAAAAC 68905 32 100.0 34 ................................ TTTACATTCTTGTTTGTGCTCATTTGTTGCTCAT 68971 32 100.0 33 ................................ TGCTACGCCCATAACACCGTCGATCGCACGTTG 69036 32 100.0 34 ................................ CAAAAGAAATTCGAGCAAAAAGCATCCAAAGAAA 69102 32 100.0 33 ................................ AAACCATAAACTCATGAGCCACGCACAGCCGGC 69167 32 100.0 35 ................................ TTGCTGGTTCCCAATAGTAACGGTTCCGCGTTAGC 69234 32 100.0 33 ................................ ATGAAATAGCGGATCTGGCTCAGGCACTAACCT 69299 32 100.0 41 ................................ GGGGTGATGATCATGAGGCTGGATCAATGTATCTGTATCGG 69372 32 100.0 35 ................................ TTGTAATGGATATCGATCGTCTTGGGCGCGGCGAT 69439 32 96.9 35 .................C.............. ATGACTGCTGGCACGCGGCCGGCGGCGATATTCTC 69506 32 100.0 34 ................................ AACGGTTTGATTACGGGACTTGCGGCGTGCAAAC 69572 32 100.0 34 ................................ TTGTATTGACGGGAGGTGTACGATTGCGTTCGTA 69638 32 100.0 32 ................................ ATTGTTGATTCTCGATCCAGCGTATGTTGAAC 69702 32 100.0 36 ................................ TGATTATGGCGGCCACTTTATTAGCTGGTCACTTAA 69770 32 100.0 35 ................................ GCCCTGAATGCTATTACGTAGGTGCCCGCTGTCCC 69837 32 100.0 35 ................................ AAGACCTGGGGGCCGCTGACGGAAGACGGGCAGCC 69904 32 100.0 34 ................................ CCCAAACGCCTTATTGAGCAGTTCGAAGTTAAAT 69970 32 100.0 34 ................................ TGGACATTAGAGAAGCGCTGTGAGCCCAATATTT 70036 32 87.5 0 ..........G.........C...G.....T. | ========== ====== ====== ====== ================================ ========================================= ================== 21 32 99.3 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ACGTATCGTGGCGTTGGTGTACCGTATGGTGTTCATCGGTTTCCGTCCCCATACATGCCTCTCCTTCCTACCATCTTTTCCTTTATTATACCTGATTATAAGTGGTGGGGAATAGGGTGGAAATCTAGTCGAGTCTATGGTGTTATAACGATTCCACGGGAGTTTTCGATTTTTCTGATTCTTTTTTTGGAGCGGTAGATCTAACGCTGTGCTTGTTCAGAATAGTCTGAAATTATCCATTATTTCGATCCCTCTGTGGTATACTGAAAAAAGGAGTTTAGAACTCGTTTGAAATGGAGTGAAAATAAATGAAAAATCGGTGCGAATGTGAAGTGCACATGAAATCCCTAGGGGATTCGCACCAAAATTATTGAAATATTGTCCAATTCAGTTTGGAAAAGTTAATTAGTTTAAAGCTATTTCGAGCTAAATCTCTCATTTTCTCCGAGATTTTAGCAAAAAACTGATTTTATTGTTATATTTTATGTTATTTTTTTGCT # Right flank : TTCCCAAAACCGGCCTTCGGCCTTGCGGAAAAGTTAAAAACGTTTCCGATACGCCACAAAAGCAAATTTTCTATGACAAACCCGGTTGTGATGAGGCTGTCCCATAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATATACAGATAATAGAGTGGCAGGAAGACGGCGGACGGAAAAGCGGCGGAATAGGGACGGGTTTAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAAATCCTGCATGAATCAGGCTGTTGGAAAACCCCTGTTTTTTTCGGAAGGTGAGTACCTAATCGAAACTTAGCATTCAGAGCGTCATCGCCTTCTGGAGACATCATAATCTCCTGGGGTTTTAACGTGTGGAGGAATTGCTGCTATTTTACAGGAATTTCGGCTCAATGAGTCGACATTTCAAGGAATTGCTGCACAGCTACATCATTTTAGGGCCTTTTGAGCTAAGTCGAAGAGAAACGGGTGAAATTCCTGCAGTTTTGCAGGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 413529-415486 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGK01000047.1 Paenibacillus thiaminolyticus strain NRRL B-4156 Ga0138519_148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 413529 32 100.0 34 ................................ CCCGTTATCCATATCGCGTTACGATCCGCACATG 413595 32 100.0 34 ................................ GACTAATTAACGACAGGCTCGGGTATGAGGCCGC 413661 32 100.0 34 ................................ GCCTATTTCTGCCTTCCGGTTCACCTCGCGATAT 413727 32 100.0 35 ................................ ATTGAGTAGGTGCATCGCGGTCATCGTATCCCACG 413794 32 100.0 33 ................................ ATCTCTTTGCCTGGACTGTCGTTGTCCGTGAAT 413859 32 100.0 35 ................................ GTACCCATTCGCGAGTAGTGCTGTGGCTACCCGCA 413926 32 100.0 34 ................................ TCGTCGCCTGCAACGGTCTATCTCGCGCTGTATA 413992 32 100.0 33 ................................ AATTCGACGACGCGCGAGGTATTACGCGAATCA 414057 32 100.0 36 ................................ GATATCACATGTTACGATGAGGCACCGGAGTTTCAC 414125 32 100.0 34 ................................ GTACTACCTACTTGGAATAGATTCATATGAAATC 414191 32 100.0 32 ................................ TCCCATATCCGCGAGCTATAGTCTGATCCCGC 414255 32 100.0 36 ................................ AACTTCGTGTATGACTATCAGGCAAAGGAGTTCGGG 414323 32 100.0 35 ................................ ATACCTGCGATTTCGGATTGGGCATTCGACGGTAA 414390 32 100.0 35 ................................ ATCCGGAACCTCAAGAGCACGGTCTGGATGATTAG 414457 32 100.0 34 ................................ ATCGATGCTCAAGCTATTGGCCGGAATGGATTCC 414523 32 100.0 34 ................................ TTAGCAGGAGGCTTTCGTTTTGCCACCATAGATT 414589 32 100.0 34 ................................ ATATTGAATAGGAAATAGGGTAAGCAGCTGCGAA 414655 32 100.0 34 ................................ GCTCCAGGAAGAAACTCATTGAACAGTAACCACT 414721 32 100.0 34 ................................ ATGAAGCGAGACGGGAAACCATTTCCGCTTAGGG 414787 32 100.0 35 ................................ CTATGACAGCAGCGTGGTTATTAATCCGTCCTATC 414854 32 100.0 34 ................................ ATGTATCGCAGACCCGACGCTTTCAGACCGCCCT 414920 32 100.0 37 ................................ GTCGCTACGGCAGGAACCATTATGGGCGAGTTTCAAC 414989 32 100.0 34 ................................ ATTAGGCGTAGATCTAATCAAACTGACATCCGCC 415055 32 100.0 35 ................................ CTCACGAACTTTTGCTTTTTTTCGTCCCAGACATA 415122 32 100.0 36 ................................ AAATGACCATGTGCCAACATGTTCGAATCCCCGCTG 415190 32 100.0 35 ................................ GCAATGACATCGAGAATACCCGCATGAATCTGCCG 415257 32 100.0 36 ................................ TTGCGTATATATCAATTTTCCATCTTGGTACAGTTC 415325 32 100.0 32 ................................ AATACGACGGAACGGAAGGCAGTACGCGCATC 415389 32 100.0 34 ................................ CATTAGGATTTGGATTGCTGACGCAATCCCCTGG 415455 32 78.1 0 .............A...C..T.AT.....T.C | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 99.3 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TTCTTTTTCCAGGGAAATGGGTCGGAAGGTTCACGGGTGCCGATGCTTCCGGTTCAGGTAGTAGGGTGAGGCTGTTAGTGCTTATCGAGTTAGTGTGGGTACGGAGGAAGTGCCCGTGTCGCTGTTCGCTGGTGGGGATAGACCTTGCTCACTCCTTATAAGCATTCTCCCTTCGGCTCAGAAAAGCAATCTTTTGCTTAAAACCGATGTAGAAAGTTAGTGCAACACATGTAAGCATGATATACTCAAAATCAGGGCAAAAGAAAATAACAAAATGGTTTTTATTTTTATTATTTAATAAAAAGCCCATTCTGTGGCAAGTGCGAATGTGGAGTGCATATGAAATTCCCGGGGGATTCGCACCAATTTTATTGAAATATTATCCAATTTTGTGATGGAAGTTCAATGGTTTGAAGACTATTTCGTGCTTAATCGCTCACTTGGTGTGAAATTCATGTAAGAAAATGTTTATATTATTATATATTGTGTTATTTTTCGCT # Right flank : CCGATTATATTCCCTTTCTCAACTGTAAAGGACACATCTACAGGCGGTTTCGGCAACTGCTGTGGAGATGTCAGGCGGGATAGTATTGCCATAGGTTTGCAAAGGGGAAACCTCGCTTTAAAAGCCTCTCAGTCGATTTGAAAAAATTGAATATTATGGTAATGTGAAAATAAAGATTTCTTGGAAGGGTGAGGATATGGAAGCATCGTCGCTACAATATTTCACTATTGGCGACAGCATAAGACAATACAGAAATAAAGCCAATCTAACGCAAAGCCAGCTTGCCGAGTTGTCAGGCGTCAGCACAGGCTATATCTCTAAAATTGAAAATGATGAGGTAGAGCGTCCTTCATTTGAAAAAGTTTGTCACATAGCTAAGGCATTACAAATCCCTATTCATGAAATCGTCCAACCTTATCTTGAAATCAGGCAAAAATCCAATGTTTTGTTCGGAATCTTACGAGAAGTGATCAAGGAAGATGCGACGGATTTAATTGTTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 946195-946887 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGK01000047.1 Paenibacillus thiaminolyticus strain NRRL B-4156 Ga0138519_148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 946195 32 100.0 33 ................................ CCGTTCTTGCTCGTATTCTGATAAGGAATAAGT 946260 32 100.0 34 ................................ AACTCTTCGAATGTCTTCGGCGCGCCTGTCGGCA 946326 32 100.0 34 ................................ AAACAAGAAAAGAACGGGAACCTGGAGCGTTACG 946392 32 100.0 33 ................................ CGTCGCCTCGTCCGTACTGTGGCCGAGATTTTT 946457 32 100.0 35 ................................ GTTCGGAATGGAAACGTGCCCGCCACCCCGGCCGG 946524 32 100.0 34 ................................ AAACAAGAAAAGAACGGGAACCTGGAGCGTTACG 946590 32 100.0 34 ................................ CGGAGACGGCGGTCGCCTGGGCGCAGCAGGCATT 946656 32 100.0 35 ................................ GCTCTTTGTCTGTAAATTTACGGGACGTGGATGGG 946723 32 100.0 34 ................................ TGGGATTGCGTTCAGTTCCAAGGCTGGCATTTGA 946789 32 100.0 34 ................................ GTCAACGAAAAACGTACCCAGGTTGAATTTTTTG 946855 32 90.6 0 ..........................G.G..C | C [946880] ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.1 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CACCACTTATCTGGTTGACCTGCTGAGTCCGTTGGAGACCCACATGAGCAGATACCTCGTTAGAGCCAGCGGTAATGATTATTGCCCATAATGTAGCCCCGTGTCGCTAGCCCCGGGCCCACAAACCGGGGCTTGTCCTCGGCCGCCCTCAAGCAAGGGACGACCCGTGAGTGCAACGACCGATACCCTATCATGCTGGCCCATGATATACTAAATGAGAGAACCAGTTCAATAATTCAACAGAACGAGTGGAAGATTCAGCCCTTTGCCCCGGTAAGGAAAGCGGAGTTGTGCAACTTGATGATTGGGGCACACCTACCGGTGCGAATGTGAAGCGCACATGAAATTCCCGGGACATTCGCACCATAATTATTACATAATTAACCAATTTAATTAGAAAGAGCTATGGGGGAATTGCAAGTTTTGGTTGTTCTATTCATTTTCTAGAGTTATTCAATCATAATTGAGTGGATTCTTGACACATTCAGTCAATTCTCGCT # Right flank : CAAAAAAAGGGCCGTTTCGCAATGAAACGGCCCGTACTATGAATCAATGGGATTGTTCCTTTAACTGCGTGATAATCTCCAATGAAAAGCCCGTGACTCTGGCGATCAATTCTGGATCCAAATCTTCGGCGAGCATTTGCTTGACAACTTCTTTTTTTGCTTCACGCTTACCTTCTCTTCTGCCTTCGCGTCTACCTTCACGCTTAATGGCATCCAAGGTTTTTTCAAGCCCCATAACCGATACGCCTCCTTTTACGTTTTGAATAAGCTCGCGCAACTGTGGTTCATTTTCCGGCAATTTCTGACTTAATATATTCGCCATCCAGGCGATTAATTGCTGTTGGCTGTCCTCTGGCAATTGCTGTATCGTATGCATCAGCTTGCCGAGCCGATTCAGTAACTCCGTCTGATCCGCCGTCTGATCAAGCAAAAAGACAGAACCGATCGTATTGGAAAGAGCCAACAACTCTTCTTCTGTATATCGAGCAACATCAATAAGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //