Array 1 120704-120403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNNF010000001.1 Corallococcus exiguus strain AM006 NODE_1_length_145663_cov_19.4372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 120703 24 95.8 44 ....C................... GACCTTGGCGGGGCTCCCGCGCTGCCCCGGGCAGCTGGAAAACG 120635 24 100.0 45 ........................ CGGACCTCAGCCGGAAGATCCAGTTCCATCCCGACGGCAGGAGCC 120566 24 100.0 46 ........................ GGAACCGTGACCGGACCCTCGGCGCTGGCTCATGGACGCGGAAACT 120496 24 91.7 46 ....C.................A. GGACCTTGGCGGGGCGCTCGGGCGCTGGCTCCGGACGGCGGAAACT 120426 24 91.7 0 ....C................T.. | ========== ====== ====== ====== ======================== ============================================== ================== 5 24 95.8 46 TGTCGGACAGTCGGACAGGTTGGG # Left flank : CCCTGCCGAGGCCGGACGCGTTGTTCGCGCTGGGACTGGATGGGCCCTGGTACGCGTCGGTGCATTCGGCCTCCGCGAAGCTGGCCCCGGAAGGGGGCGCGATGGTGCACGTGGCGAAGTACCTGGGCGGCTCGGACACGGAGGCGAGCGAGGCGGCGCTGGAAGCCGTGATGGACGCGCTCCAGCCGGGATGGCGCGCGAAGGTGGTGGCGCGGCGCTACCGGCCCTCGCTCACCGTCAGCGCCGGGCTGCCCCGGGCCGTGAGCGGCGGGCTGACCGGGCGTCCCTCCGTGGAGGTGCCGCACGTGGGCGGCCTGTTCCGAGTGGGCGACTGGGTGGGCGCGGAGGGAATGCTCGCGGATGCATCCCTGGCGAGCGCCGAGGCCGTGGAGCATGCCCTGGTGCGACGCACCGCGACGTCCCAGCGCAGCGCGGCGGGAACTTGAGGCGGATGGGCGCACAGGCCAGGAGCCCCTCCCCGGCGGCGCCGCGCAAAAACG # Right flank : CCCGGTCCGGGCCCGGAGGGGCTCGGCGTGGAGATTCGGGAGCTTGGGGTACCAGGCATCGCGGCGTTCCGGTGATGCTCTTGGATTGTTGGAACGTGAGGGCTTGAACGGGATGGATTCACAGGCGCGAGGAGCACTGGGACAGGCCGCACGCGAGCACGAGCGCTTCCTCTGGGGGCTCTGCTACCGGATGACCGGCGTGGCGGCGGACGCGGACGACCTGGTGCAGGACGTCTATGCGCGCGCGCTCGCGACGCCTCCGGAGCGCCTGGACACCCTGCGTCCCTGGTTGACCCGCGTGGCGGTGAACCTGGCGCGAGACCACCTGCGCCGCCGCCGTCGCGAGGGCTACGTCGGTCCCTGGCTGCCTTCGCCTTTGGAGACAGGCGATGAGGAGGTCCCTCCCTCGGTGGAGGCGAGGCTCCCGGGCGGCGGCTCGACGGAGGGACGCTATGAGTTGCTGGAGAGCGTCTCCTTCGCCTTCCTCCTGGCGTTGGAAG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGGACAGTCGGACAGGTTGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 31092-31415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNNF010000003.1 Corallococcus exiguus strain AM006 NODE_3_length_104632_cov_19.2111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 31092 31 93.5 44 .........................C.C... GCCCAGTCGGCCGGGAGGGGCTCCCCCTTCAGCCGAACCACGGA 31167 31 96.8 41 ..........................C.... ACCTCAGCCGGGACGGGCGCCTCCCTCAGTCGAGCCAGAGG 31239 31 100.0 41 ............................... ACCTCGGCCGGGAGGGGCTCCCCCTTCAGTCGAGCCAGAGA 31311 31 100.0 44 ............................... ACTCGGTCAGTCGGGACGAGCCCTCTCCTCAGCCGGGCCGCGAA 31386 30 90.3 0 ...C........................-.C | ========== ====== ====== ====== =============================== ============================================ ================== 5 31 96.1 43 AACTTGTCCGACAGTCGGACAGGTTTGGAGA # Left flank : GCTTCGATCTGGTGCTCGTGGGCAGCGCTCACGTGAAGAGGCCCGGAGAAAGCGCCGCTGCATCCGCGCCCGAAGAGGGCATGACGATGCTGGCGGTGACCACGGCCGCGAAGGCGGAAGCGAGGGGCTTGAGGCCGCTGTGCCACCTGCGGATGTCCGAAGCTGCGGGCTCCGGTTCAGGGGCGGGCGTCACGTTGCCGCCCCACTCCGCCCACGAAGCGCGGGAGGTGCTGAGCGCGGTGCGGGCCGCCGCCGAAGGACAGGCCCTCACGCTGCGCTTCCATCCGGATGCCGCGACCGGCACCCAGCTGGTGCTCCAGCTTCATCCTGACCTCGGAGCCCAGACTGGAGCACCGGAGGAACAAGCGGTGGCGGCAGGACCTCTGTCCGCGGAGCGCCGCGTTATGGACAAAGCCGCCAGGTCCTCGGGGATCTCCTCTGTCTCCAGTGCTGAGAATCGAGACCTCGGCGGGACCGCCCTGTCGGCGGCGAACCACGGA # Right flank : CCGCTCCGGTCCGGAGGCGGGCACCTTGGATGTCCGTGGGACTGGCGCTCCGTTTGCACCAGGAGCCATCGCGACGCTCCCCGCGCGTTCGGAACCCGAGGCGTCCGCCACGGCTACCGGTGCCGCGCAGGCACGGGCGGGCTCGGATCGCCTGGAAGAGGCACGTTCGCCGTCGAGCTCCGCCTCCATCCCGGAGACCGCTGACGGTTTCGACCACTCGGCGCCCATCCGCTACCACGCGCCGGTGCTCGTCGAGCGTCCGGCACTGACGACTGGAGCGTCGCAGCTGCGTGGTCGGCGGGTGCTGTTCATCGCTCAAGGCGAGGCCGTGGCCCGTGAGCTTTCGGCCCAGGCACACGACATCTGCGGCCCTGAGTTCCGCATCCTCCGCTCGGGCTCCTCCGATGCGGGAACGCGGATCCACGGCATCGACCTGACACGGGAGGAGACCGCGGAGGCGGGCCTGGATGCGCTCGGCTTCGAGCCACAGGTCATCATCT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACTTGTCCGACAGTCGGACAGGTTTGGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 498-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNNF010000688.1 Corallococcus exiguus strain AM006 NODE_688_length_504_cov_0.533156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 497 32 100.0 33 ................................ CTCAATGTAGTCGATGCAGCGCATTTCGGCCCC 432 32 100.0 34 ................................ AGCAGGCTATCGGTGTCCATCTTCGCCATGGTCA 366 32 100.0 36 ................................ CAGTTCATCTGAACGACGAATGCCATATCCGACTCT 298 32 100.0 34 ................................ ACTGAACACGCCAGCGTCAACCGTGAAGAATTCC G [284] 231 32 100.0 34 ................................ CAGATGTAGCAGATTGCCATTCTTCTCTCCCTGT 165 32 100.0 34 ................................ GACCTGGTGGCGACGACCGCCAAGGTGATCGCCC 99 32 100.0 35 ................................ ACCCCGATGAAGCCGATCGTGGATGGCATGGGCAT 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 34 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : GTGCCA # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8137-8358 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABNNF010000166.1 Corallococcus exiguus strain AM006 NODE_166_length_20333_cov_20.3185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 8137 27 96.3 33 ..C........................ GCCAAGCCGGCCGAAGGCGAGGAGGCCGCCGCG 8197 27 100.0 39 ........................... CCGAAGCCCGAGGTGGCGGAGGGAGCCGAACCCGCCGCC 8263 27 100.0 42 ........................... GCCAAGCCACCCGAGGGCGCCGCACCCGCGGAGCCCGCCGCG 8332 27 88.9 0 ..C........T........T...... | ========== ====== ====== ====== =========================== ========================================== ================== 4 27 96.3 38 CCGAAGAAGCGCGGCCGTCCGCCCAAG # Left flank : CTGACGTGGAGGAGATCTACTCGTTCCTCCGCTCGGACAGTGACAAGGCGGACCTGGACTGGAAGCAACGCGCGCGCACCAACCTGGACCGAATGACCCAGGGAGGCATCCTGGGTCTGGCGGAGGTCGTCAAGGGCCTCCAGGTCCTCAGCGAGCTGCGGCCGCTGCCCACCAAGGAGCGCGAGCTCTACGACAACGCCCGGCACCTGCTGGTCTCGGAGGTCGCCGCCGCGCTGGGCACCGCCGAGGCCAACGCCGAGGACTCCATCGACATCGTCCTCTTCCCGCCCGGGAAGGAGCGTCCCAAGCGCACCGCCGCGGAGTTCGCGCGGCCCGGTGGCGAAGAGGACGACATGGACCTGGACGGCGACCTCATGGGTCTGGAGGGCGGGGAGCTGGACCTGCCCTCGGACGAGGAGCCGCAGTCCGAGTCCGAGGAGGAGTCCTCCGAGGAAGAAGGCGGCGAGGAGGAAGGCGGCGAGGAGGGGGGCGAGGACGCT # Right flank : GGCGAAGCCGCCCGAGGACGAGTGAACCCCACGGCCCTCCGGCCGCCCGCGTCGCGCCGAAAGCGCGCGCCCGGCACCGCGAGGGCCTTCCCGCCGAGGTGACGCCCCGTGATTCGCGTCGTGACGCTGGACCCCTTCGACGACAAGCAGCTCGCCAAGTTCAACCGCACGCTCTACACGGCCTTTGGCGTGGGCAGCGAGCACAGCGGCTCCGCGGAAGTCCCCGCGAGCATGTCCGAGCCCCTGGACGCGGAGAAGCTGCTCGATGAGGTGAAGGGCATCCGGGCCTACAAGGACGACAAGGTGCTGCTGCTCACCTCGCGCAAGCTGAAGGACCGGGACCTGCCCAGCGGCAAGGCGCCCACGTCGGGCTTCGCCAGGTACGGCAAGGACCGGGCAATTCTCTCCATCGCGCCGTTCAAGGACCTGGAGAAGGACTTCAAGCCCATCGCGCGCCACGCGCTGCACCAGCTGGGCACGCTCTGGGAGCTGCACCACTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAAGAAGCGCGGCCGTCCGCCCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //