Array 1 35982-35074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPZC010000009.1 Escherichia coli strain 21EC NODE_9_length_198756_cov_49.187606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 35981 28 100.0 32 ............................ TTCTCTTACAGAAGGCACCGGGAGGGCACCCC 35921 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 35861 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 35801 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 35741 28 96.4 33 ....G....................... AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 35680 28 100.0 32 ............................ GACCTGAATCCCAAACCTACCACCCACAAAAA 35620 28 100.0 32 ............................ GCTAATGTCTGCGGAGTATGAGATCGCGCTCC 35560 28 100.0 32 ............................ CGCGCACGTCGTCATTTAATACGTCATCAAAT 35500 28 96.4 32 .............T.............. ACGCCCAGCGACTGACACCGATTGTGGTCCCG 35440 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 35380 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 35320 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 35260 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 35200 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 35101 27 85.7 0 ...G...A...............C-... | T [35082] ========== ====== ====== ====== ============================ ======================================================================= ================== 15 28 98.6 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46632-45037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPZC010000009.1 Escherichia coli strain 21EC NODE_9_length_198756_cov_49.187606, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 46631 28 100.0 33 ............................ GTATACGGCACATTTATAGACCCCGAGCAACAG 46570 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 46509 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 46449 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 46388 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 46328 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 46268 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 46208 28 100.0 32 ............................ GAACGCGGTCATGCGGTATGCGCCGACAATAC 46148 28 100.0 32 ............................ CTGGAGGTGCTCACACTCACGCGGAGTGAGAC 46088 28 100.0 32 ............................ ACAATCAGGCGATAAACCTCACCGTTAATACG 46028 28 100.0 32 ............................ AACAGCGAATGCCATTTCATAGTGATTAAATA 45968 28 100.0 32 ............................ AGCAATGGAATTAGCGAAAAACAGGCACAAAA 45908 28 100.0 32 ............................ AGTAATTTTGGGCTGTCACCGCAGCAAGCGAA 45848 28 100.0 32 ............................ TGCACGATGCCCGCGCGTGACGCGGTGCGTAA 45788 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 45728 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 45668 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 45608 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 45548 28 100.0 32 ............................ CAGTCCAGAACCTCGTCAGCGACGGTACTCGC 45488 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 45428 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 45368 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 45306 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 45246 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 45186 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 45126 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 45066 28 85.7 0 ....................T...C.CT | C,A [45040,45043] ========== ====== ====== ====== ============================ ================================== ================== 27 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGACTGTCTGGTAGGTTAGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //