Array 1 8676-9314 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYKE01000282.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 32evb NODE_254_length_9359_cov_7.964316, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8676 29 100.0 32 ............................. GTATTGCGCCGCCTGGTTGAGCGTTACGCCGA 8737 29 100.0 32 ............................. GTCGATACAAACACAGGGTGTTTTAAAATTTG 8798 29 100.0 32 ............................. CTTGCAAAACTTCGAGAAGGGGACGTGGTTTT 8859 29 100.0 32 ............................. CTACTGCAGGGATGTTGGGATGTACGGAAAAA 8920 29 100.0 32 ............................. CCGTTGATTAATTTCTCAGTGTTGATGGAGGA 8981 29 100.0 32 ............................. GCGTCGGCCATTTCTCCCAGCTCCGGCACGCC 9042 29 100.0 32 ............................. AGGATTTATCGATATCTGCCAGCGGCGCAAAA 9103 29 100.0 32 ............................. GGGCTGCACCAGTTCCTGCGCGATAAAACGGA 9164 29 100.0 32 ............................. CTCGTCCTTTTTGATTGAGTTCTCGTCATATC 9225 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGCGTT 9286 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : AAAAGCTTCGACAAATCCAGCTAAAACACTACGTGTTCCCCGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30669-29602 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYKE01000260.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 32evb NODE_43_length_30694_cov_7.792780, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30668 29 100.0 32 ............................. TAGAATGTGCAACTACGCAAAATAGAAATGAC 30607 29 100.0 32 ............................. GCATTTGTCGCAGTAATATTCCTCACGACGAT 30546 29 100.0 32 ............................. CCCGCGAGGGATTTTTTTATGCCCGGAGTAAA 30485 29 100.0 32 ............................. CCTGTACCTCTCCTGTAAATGTTCCGCTAGTT 30424 29 100.0 32 ............................. TTTACGGTATTCGTTGTCAGCAATCCTGATCA 30363 29 100.0 32 ............................. CAGCTGCTTCGCACCTGCCGGGCTACGCCGAA 30302 29 100.0 32 ............................. CTTTCTTTAACGTCCAGTCATTCCTTGAGAAC 30241 29 100.0 32 ............................. CGTCCTGGTACGTCGGCGTGAACCCTGCCGCA 30180 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCGTCTGTGCCG 30119 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 30058 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 29997 29 100.0 32 ............................. TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 29936 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 29875 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 29814 29 100.0 32 ............................. ATATTCAAACGGCGCGGGGGGAGACATCCGGA 29753 29 100.0 32 ............................. GTTACAGTATCATGTAAAACTGTATAAAAACA 29692 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 29631 29 96.6 0 A............................ | A [29604] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCTACCGCGCTGGACTGCGCCGC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9017-7467 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYKE01000056.1 Salmonella enterica subsp. enterica serovar Wernigerode strain 32evb NODE_156_length_14330_cov_8.020035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9016 29 100.0 32 ............................. CCGGTTAATTTGTTGTAGCCGTCGCGGGGCGG 8955 29 100.0 32 ............................. CCCGTGTGCCCTTTCCCCTTGCCGTAGTCCAA 8894 29 100.0 30 ............................. ACGGTACACACCATCCTCGTTGATGATGGT 8835 29 93.1 32 CA........................... GCCCCGATAGCGTCAACTATCAGGGCCTGCAA 8774 29 100.0 32 ............................. TGGGTGCGTCTGCGTGATTTTGCAGTGTACCC 8713 29 96.6 32 ............................T ATACGGTGCCGCCTTGCTGTGAATCCACGGGC 8652 29 100.0 32 ............................. TTTATACCGCCCTCGCCGTCTGCCGGAATATT 8591 29 100.0 32 ............................. GGTGCAGGGGCGGCGTATTTGCGCCTGCACCT 8530 29 100.0 32 ............................. TGACAACGGTGACAATAAAACAATCGCCAGTA 8469 29 100.0 32 ............................. GTTCTGTGTTCGTCTACGATTCAGAAAAATGG 8408 29 100.0 32 ............................. CCGCCTAAATAATCCGGTTTCCCATAAATCTG 8347 29 100.0 32 ............................. TGATCGTGATGAGTTGCCATGCGCGCAGGTTA 8286 29 100.0 32 ............................. CGTCCAGTACCCGTCCTCGTCGCGTTCTACAA 8225 29 100.0 32 ............................. GCACTCCAGCGCCACGGAATACAGGTCGGCCA 8164 29 100.0 32 ............................. AAAAAACCAATAGCACACGTAGCATTAGTAAA 8103 29 100.0 32 ............................. TAGCCAACGACTGATAGATGATCTCATAGAAA 8042 29 100.0 32 ............................. TGAGGGGGTTATGACAACCACCATAGTGATAG 7981 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 7920 29 100.0 32 ............................. CGCGAACGCGCGCAGCAGCTGCCGCAGGCTGT 7859 29 100.0 32 ............................. GTCGCGTGAATCCGGCTAATCTGGATGATCCG 7798 29 100.0 32 ............................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 7737 29 96.6 31 ...........................T. AAAAAATGCGATCGGTACTCAACCCGGCCAC 7677 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 7616 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 7555 29 96.6 32 ...........................A. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 7494 28 86.2 0 ...............A.AA......-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTTTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //