Array 1 2991-1554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDJ010000010.1 Bifidobacterium dentium strain 841B Contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2990 36 100.0 28 .................................... TCCCGGCCTCGACATGTAGGAGGGGCGG 2926 36 100.0 29 .................................... TTTGCCTCGGCGGAGCCATTGGCTTATGA 2861 36 100.0 28 .................................... ACTTCGACGGATTCAACGAGTACGCTTT 2797 36 100.0 28 .................................... GCATCGGAGGATCACCGGCTACACCGCC 2733 36 100.0 28 .................................... CCTGCCGTGAGTCGAAGTGATCCGGCAG 2669 36 100.0 28 .................................... TAATGTACGCTCGCCAAGCCATATCCGA 2605 36 100.0 28 .................................... CGTGGGATGGCGTCGTGGTTTTCAACCA 2541 36 100.0 28 .................................... TGATGCACGTCGTGCCGCTCTCGGCAGT 2477 36 100.0 18 .................................... CGTCAAACATTTGACGAA Deletion [2424] 2423 36 88.9 28 AGG.G............................... CTGTTCTTGCTTGGCATTGCCCTGCTCG 2359 36 100.0 28 .................................... TCAAGTCATGCAGTATCCACTCGGTCTC 2295 36 100.0 28 .................................... TGGTCGGGCAGCGTTCGGCGTCGCAGGA 2231 36 100.0 28 .................................... CGAACGTGCGTCGGGTGGCGCTCATGAT 2167 36 97.2 28 ........C........................... TGCCATCGCATCTTGATATTTTCCTCCC 2103 36 97.2 30 ........C........................... TGCATTCCACGCACACCTTATGCCCCCAGA 2037 36 97.2 28 ........C........................... GGAGCCAACCTATGCCGTGCAACGTGAC 1973 36 97.2 28 ........C........................... CCATGAGCGCCTTATAAATGAGCGCTTG 1909 36 97.2 28 ........C........................... GCTTCGGTCACAACGATGTCACAACGAA 1845 36 97.2 28 ........C........................... GCAGAATATGACGGTCATCACCGAGGCT 1781 36 97.2 28 ........C........................... CGATCCACGAGGATGTTCGCCGCCATGT 1717 36 97.2 28 ........C........................... AAGTTACCTACGGGTGGCGGTTCAAATG 1653 36 97.2 28 ........C........................... ACTCCTATTGTTGAAGGAGGCCGCGCAG 1589 36 97.2 0 ........C........................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 98.3 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGACATGGGCTACAGCATGGTGCAGTATTCCGTATACGCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGGCTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTAAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : ATGAATATGCGTCATCGTTCGGAAGGATGCGAGCACGATGAGGTTCATTCGACGCGAAGTGATATTACGGAAAAGAGGTTTCGGCTCACGATGCATACAGGTTCCGAATGTTTGATCATCGGCGCGCCCAAGCACGGCCATCTTGATTTCACCTATGGCCTGACGCAGGCCGGCAGAGAAGCGTTGATGCTGTCCGATTCCTGCGTGATGAAACTGTTCGACGTTTTCATTGGAGTATTGGACGAAGACGAAGGCTTGGAAAAGTCATGTCGGGGCAGGAAAGGCGTCTGAACAACCTCCGGAAGGTGCGGATAGACAATCCTTAAACAAAAGAAAATCCTGCAACCGCTGTGGAAGCCCTTTGGCTAACAGTCGTCTCGCAGGCACGATCGTCGGCATCTTCAAGGGACTGTTCGGCTGACCCAAGCGGAATATGAAGACGGATGAGTGACTTCAATGGCGACTTCATCGTGAAGTCGCCATGTTTATTGCCGGCCGTT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : CAAGTTTACCAAGAAGGGTAGAAGCTAATTCCCAGT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 203048-199460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDJ010000013.1 Bifidobacterium dentium strain 841B Contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 203047 36 100.0 35 .................................... GGTCTAACACTACCGCAAAAAGCAATGCAAGTCGT 202976 36 100.0 36 .................................... AACCACCACCGCATACGGAAGCATCTTCGAAAACCA 202904 36 100.0 37 .................................... GCCTTCAGTAGAATCAGGTTTCATATCTTGCTGGCCG 202831 36 100.0 38 .................................... CGCCATCAGGGATTATTGCGACTCCAATCTCGTATCGA 202757 36 100.0 36 .................................... GCATTGGCCTCCGCACAAGGCGCAGACCCGGACCAG 202685 36 100.0 34 .................................... TGTTTTGCATGATGGCTTTGATGATGCCGGTCAA 202615 36 100.0 34 .................................... TGGACTCGTCCCACGAGCCCGGCGACATCGTCTT 202545 36 100.0 38 .................................... GTCTTGGAACGGCGGCACTATTTCACGACTTTCTGCCA 202471 36 100.0 38 .................................... GTCGCGCGCCTGCCAGCGGCTGCGTTCTCGATGAACCT 202397 36 100.0 35 .................................... GGTGCGTGAAGGCAAGTATGGTACGGCTTCCGGTA 202326 36 100.0 36 .................................... AGCGGTCGAATAGGTGCGTTGTTCCGCACCCGTCGT 202254 36 100.0 35 .................................... TAGGGGTACGGCGAAGTGAGTTGGAGCGCTTACCT 202183 36 100.0 35 .................................... CTGTGTTTGGGGTGATGGTCGAGCGCATACAGGAC 202112 36 100.0 37 .................................... CGGAAGTATGGTACCATTCGCAGAACCGTCGCGACCA 202039 36 100.0 38 .................................... TAGACCACGGTACGTACCTGCTTGCTGAACACCGGCGT 201965 36 100.0 36 .................................... GACGGCCTGTATATGCAGGTCGAGCATGTGCAATAG 201893 36 100.0 39 .................................... ATCACCGCCGACGTGATAGTCCAGCCGAGCGATTGCGCG 201818 36 100.0 35 .................................... ATGCGCAAGACCAGCTCGACAAGCTTACCGGACAG 201747 36 100.0 38 .................................... TATGGCGGTTCGAACAAAGGCTTGGCGTATCCGCTGTC 201673 36 100.0 35 .................................... CCTGCGGTGAAGCGGCCGATGCTGGTGCGGCTCGC 201602 36 100.0 40 .................................... GTGTGTCTGCAACTACACGTCGGCGTGGGTGTCGGAAAAC 201526 36 100.0 36 .................................... CATGGCGAGGATGCCGATTCTCGCGCCGAAGGGCCT 201454 36 100.0 34 .................................... CGTGGTCTTCCGCAAATCCGCTCCAGCCGAGCGT 201384 36 100.0 36 .................................... TTTCCAACCGCGCACGAATTGGTACACGTTTACGTC 201312 36 100.0 38 .................................... GATACCGAGTCCTCGAGCATGATTTGCCGCAATTCGAT 201238 36 100.0 37 .................................... AGCACCCGGTACGAAATGGTCACGCATCGCGCCTCAT 201165 36 100.0 36 .................................... CGGAAGAATACGACACCCTTTTCAGCGGCATGACCC 201093 36 100.0 37 .................................... TGGCGGTGCCGGTGGTGCCGTCGAGCTTGCGGAAACT 201020 36 100.0 38 .................................... CCGCGTACGTCCTGCCGTAGGTTCGATTCCATCACCTC 200946 36 100.0 36 .................................... GCCGTGCACGAAAACAGTCTGCCGATCGACCTGCGT 200874 36 100.0 38 .................................... TGCGTACAGCCGTCGCCAATGAGGGCGGCCTAAATCAG 200800 36 100.0 37 .................................... ACGGTCAGCGAGCTCGCCGAACGATTGAGATCCGGCA 200727 36 100.0 35 .................................... AACGCATTCAAAATCTATCCTAATGCGCGATATTG 200656 36 100.0 36 .................................... CTCCGCCCGCTCCCGACGAAACTCCTCCTCATCCTG 200584 36 100.0 36 .................................... GGTCTGTGAGTAGCCCATGTTCGCGGTCTGACACCA 200512 36 100.0 35 .................................... CGGCCCGCGTATTTCTTGAATTCCGCGTCGTCCGC 200441 36 100.0 36 .................................... TTTCTGAGCGGTTTTGTCCCATTTGACGATATCCCT 200369 36 100.0 39 .................................... ATGTTAGGAAACGTCTGGAACATGCCGGTGATGTCCGCA 200294 36 100.0 37 .................................... GATTGTCTTGCATGATGGCCTTCACTATGCCGGTCAC 200221 36 100.0 36 .................................... CCGTGCGTCTGTTATGTCGGCGCGCGCGGCGAACAT 200149 36 100.0 39 .................................... GTCGATGGCCGTGAACTGCGAGGTTGCGCCTTCCACCCC 200074 36 100.0 35 .................................... CGGGTTCGCGCCCCGGAATTATCGGATTCGTGTAA 200003 36 100.0 37 .................................... TTGATGGCAATCTCATAAATCGTTGCACATAGTAGCC 199930 36 100.0 37 .................................... TCACAATATACTTGATCCCATACGGGCGACCACTCGT 199857 36 100.0 37 .................................... ACCTTTTCGTTCCGTGATGTCATGATATAACTTCCCT 199784 36 100.0 39 .................................... TACGCCGTCCGACGTGAGTTGCACGTCGACTTCCGGCAC 199709 36 100.0 36 .................................... CCACACCCCATGCCGGCCAAGGGAAGTTGCTTATGC 199637 36 100.0 35 .................................... TCGAAATCGTAGTCGTTAGTGGCGATGAGATAATT 199566 36 100.0 35 .................................... AATTCCCGTTGGGCGGATAAGTATAGTTGGTTGTA 199495 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 50 36 100.0 37 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : CCACTCCCTGATGAGATAACCGAAAACGAGAGGAACCATCCGGATTACCGGTGACGGTGTCCATTTTGAACGCCGATGGTGTTCAGATTAACTGGTGACGACACGCGGATTTATTTGACGAAAGACAGCCATGATTTACCGC # Right flank : CGTCTTAGTGTAGAGCGTTGTGGTGACATGTATCTCAAGCAATTATGCGAGCGATGTACTTCATACCCTATGAAAAATGCGAATCTGGGAACGCTGAATCCCACAGAAACGCCATTTTCCGCATGCGAGCGCTTGCCGCGCGTCTCAGAAGTGATTCACCTCTCGTGCGCATGCAAGACGAAACACTCTTTAGTTATCAAACAGCCCAGCCGTTTTGACTGAAATCAAATAATTGTGGGAATTTCTAAGTCTGCATATCCTCGATGCCCCAGAAAATCCAATCCCTCTTCCGTCTGCGCAATTGTCCCCAATGAGCAGAACACAACAGAATCGGTTCCATAGTCAATCTCTTTCTCAATCTTCATACGTACGTTGAGCATCATTGAGGGGCGCACTTGCAACAGAAAAACACTGTATTGCAGCCGTTCTCCATAATGCTGAAGAATCTTCGCTACATGACTGCGACGGTAATCATCGCTCACATCATATGCAACTAAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 924-158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZDJ010000014.1 Bifidobacterium dentium strain 841B Contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 923 36 100.0 37 .................................... GCAAATACGAGGACAGCAAGAACGCTCTGCGAGACAT 850 36 100.0 38 .................................... GTGATGCCGTACTCCTTGCCGCCGGTCACGTAGTGCAG 776 36 100.0 36 .................................... CTCAGGGACAATCTCGACCGGGCGGGCATGCCGTCC 704 36 100.0 38 .................................... TTTCCGGCATGGAATTGCACCACGTCATGGATGAGTAG 630 36 100.0 38 .................................... ATGAAACGCCCATGCATGCCAAAACGAAAAGGTTTATA 556 36 100.0 35 .................................... AAAAGCCTGAAATCGACCCTCTTTTCCACTGACAA 485 36 100.0 35 .................................... CCCATGTTCACATTCGGGTCGTTTGTCGTACCTAT 414 36 100.0 37 .................................... ATACCGAGTCTTCGAGCATGATTTGCCGCAGTTCGAC 341 36 100.0 38 .................................... AACACCGCAAGCTGGTTATTATAGGCTTGACCGCGCAC 267 36 100.0 38 .................................... TGCACCAGCTCGTGCACGAGGGTACAGCGCTTGCCCGT 193 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 100.0 37 ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Left flank : CAACCCGCCCTTTCGGTTTTTATTCTGTGTAAATAACTCCCTTCGCCTACAGTTCAATTTGGCGTCATTTTTCTCTGATCTTGTCTGAAAAGGATGTTTGCCGTTGTCTTTCAGGTTTTGCAAAAAGCTGGTTTTCTTCCAACGATTTACGATTGCCATGTTGGAGTGCGGATCAACTGTAGCCTTCGGAAGTTGACGCTCTTCTGCTTCGGATGCGTATAGTAATCCTACATTTCCATTCATTTAATTAAGTCATAGAAGCGACGATGGATTTGCCTTCTGGGACAAAAGGTATAGGATAAGGAAACGTAAAGGAAGAAGGGTCTCTGGCGGATTTGCAGATTCGCCAGAGACCTGCGAAACGGAAAGAAGGTGATAAGGCATCATGGCCGCCGCCCGCTTTCTGGCTCGTATTTCTAAGGCATAGAAACATGAGCCAGTATAGCAGGCGGAAAAGAGAAACGCGGTGTTCGTCTTTTCGCCGCAAAGCCGCTACCGCG # Right flank : TCCGGATTGATTTCGACGTGCTGGCCCGTGACTGTTTATGGTCAAATAAACGTGTACGGCGTCACCACCAAATCTGAACGGTGTGAGCGTTCATATCGGACACGGTCGGCGGCTGGAAACGGCATCGGCGGAAGAGAAGCGCCGGTGCCGTACGGTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTGAGTATTAGAGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //