Array 1 207655-209737 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHIO010000004.1 Clostridium perfringens strain 4928STDY7387898, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 207655 36 86.1 29 A...C.TA..A......................... CCGCAACCATAACGGTTGACTATATTCAA A,A [207657,207667] 207722 36 100.0 30 .................................... GAAACGAATCTACTATATTGACCATCAATA 207788 36 100.0 30 .................................... TAAAGTTTGGAATGATTTTAAGCGTTGTTA 207854 36 100.0 31 .................................... GTACTTTAGAGCAATTATTAGAACAAATTAA 207921 36 100.0 30 .................................... ATTAATTTAAGTCCCCTCTTATCAATTGAT 207987 36 100.0 30 .................................... AGGGCTTATAGTTCTAAATGCTATGCAGTA 208053 36 100.0 30 .................................... TAAGAGAATTAATAAATACTAACTTTATAG 208119 36 100.0 30 .................................... TGGTAGTACTAATGCATTAGATTATGTTAT 208185 36 100.0 30 .................................... TCTGGTACTTTTATGCCTAATCCTTATCTG 208251 36 100.0 30 .................................... TTAGATATAAAAGGAAAGTTTTCTTGTAAC 208317 36 100.0 30 .................................... TTAGTAGTGGGAGTAATGATGTCTTGGATG 208383 36 100.0 30 .................................... TCATTACAGTTTCAAAAGTTTCTTCATATC 208449 36 100.0 30 .................................... CCATATTTTACGGTAGAACATTTACCAATA 208515 36 100.0 30 .................................... CTCATTTCATCAGTAATATTACTTTTAACT 208581 36 100.0 30 .................................... AGTTAAAGTTAAATATTCTGTAGTTATTGA 208647 36 100.0 30 .................................... TTTTTAGAAAGTCTTAATATATAGCTAATA 208713 36 100.0 30 .................................... ACAAAATCACTACGAACATAACCAATTCCA 208779 36 100.0 30 .................................... GAATTGTTTACACCATTCCATTGATATTCT 208845 36 100.0 30 .................................... TAGTAATTTTAAAGGAATAGACATAAGTAA 208911 36 100.0 30 .................................... AGATAAAACAATTAATATTAGAGTTAGTTT 208977 36 100.0 30 .................................... GTGTATAATGTGGATAATATAATCGTTAGG 209043 36 100.0 29 .................................... CGTGTCAAATTAATTTGGATATATTGACA 209108 36 100.0 30 .................................... TTATTTCATTAAGTGTTATTGCTGGTACTT 209174 36 100.0 30 .................................... GAATTTTTATTGTTGGCCAATACTTCTCTA 209240 36 100.0 30 .................................... TATGAAGAAAGAAGGTTTTGTATTTGATAA 209306 36 100.0 30 .................................... GGAGGAGCAAATGGTAAATCAACATTTATA 209372 36 100.0 30 .................................... TAACTATAATTATGTAGATAAGCAAGAAGT 209438 36 100.0 30 .................................... AACACAATATGACAAAGGGGAACAATACGA 209504 36 100.0 30 .................................... CCTACACCATTTTGAGATAATGCTCTTCTA 209570 36 100.0 30 .................................... AAGAGAAAAGTATGGGCCTTTGGATTAGGT 209636 36 100.0 30 .................................... CGAACAGAGTTGTCAAAAATGAACTTATGG 209702 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.6 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGGTTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGCCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTCTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGTTTTATCTCTGGCAATTTTAATAATCTAAAATCTTTTTTACTACAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAACAGAATGATTTTTTCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //