Array 1 3978-7423 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050810.1 Trueperella pyogenes strain jx18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3978 29 96.6 32 ............................G GCCAATAGTCGTTGTCCACGACGTCGGCGTTA 4039 29 96.6 32 ............................T TGCCCACGCGCCACTAACAACCGATGAGAAAA 4100 29 96.6 32 ............................G TGATTAACGCCCTCGGCGGCTTCGCTGGACTC 4161 29 100.0 32 ............................. CCTAAGGGTGGCTTCGACGTCGTTGAGCATTG 4222 29 96.6 32 ............................T GTGACCGTGCCCACTGGTGCGTGGGCGTCCGG 4283 29 96.6 32 ............................G GCGTGGCGAGATCTATGCATGGACGCCGGCGT 4344 29 100.0 32 ............................. CCGATCACGCGGAACCTTCAACGCAAGCTTCC 4405 29 100.0 32 ............................. ACCCGGCCCCTCAAAAGCCGCGTCGGTCGAAA 4466 29 100.0 32 ............................. TGGGGGTCAGGCATCAGCGTGCAGACCTCACA 4527 29 100.0 32 ............................. CCGGCCAAGTCGCCACCCCTGACGGGTAGGAA 4588 29 96.6 32 ............................G TGGATTGCTGGGCGCGGACCGCTTCCACCGCG 4649 29 100.0 32 ............................. AAAATCGTTAATCACCATCAGTGCCCCTTTAT 4710 29 96.6 32 ............................G GTCTCCAACTGGGCCGTGTTCAATGCCTGCTC 4771 29 96.6 32 ............................G ACTCCTCCATGTGTAAGAATCGAGAGCATGGG 4832 29 100.0 32 ............................. TCGGTGCCCTTCTGTTTGAAAATCTCGAACGC 4893 29 100.0 32 ............................. GTCTGGAAGGTCGACAATTCGTCGGGGACGCC 4954 29 100.0 32 ............................. CGCTGGTGACATCTGGTGGACATACGACGCCT 5015 29 96.6 32 ............................G ACCACCAAGCGCACCAACGACAGCCTGGACAG 5076 29 96.6 32 ............................G CAGGTCAAGTCTGATGTGTCTGGGCGCGAGTT 5137 29 96.6 32 ............................T AGGTCGGAATCCGACTGAAATCCACATGCCCA 5198 29 100.0 32 ............................. GAACTGGGTGCCCTGCAATTCCGGCTATATTC 5259 29 96.6 32 ............................T TAGAAAAGATGCTTGCGGAGAAAAACGCTGAT 5320 29 100.0 32 ............................. CCCGTACACCAAGTTCGCGGCCTACGCCCTCT 5381 29 96.6 32 ............................G TCTGTTACATGGGTTGCGGCGTATTCGCTTGC 5442 29 100.0 32 ............................. GCCTTGGTGGATGCCGGGATTTCCCTAGGTGG 5503 29 100.0 32 ............................. TGCTCGACGTCAGCGCGGATATTTACCGCGAT 5564 29 100.0 32 ............................. GATCATTCAGCGTTAATGTGGCAGCCAGGGTG 5625 29 100.0 32 ............................. CGCGTGGGCGGGTTCAACCGTTCCAGAGGCTT 5686 29 100.0 32 ............................. AATGACCACGACGATCGGGTTACAACCTACAA 5747 29 100.0 32 ............................. CTGCCCAACGGGCAAACCCGTGACGTGTACGC 5808 29 96.6 32 ............................T GATGAGCTTGCCCTTTACGTGTGGCTGCTCCT 5869 29 96.6 32 ............................G ACTATTGGACGCTGACGCTTGCCGAGCGTGAA 5930 29 96.6 32 ............................G ACATGGTTTTGCACGGTGGTCGGCATGGTATC 5991 29 96.6 32 ............................G CTTGGCTCCTCGCGCCAGAGCATGCATCACAA 6052 29 100.0 32 ............................. CGCGAATGAAAACCACGATACGTACCCTCGCT 6113 29 96.6 32 ............................G CCGAAAAGGAGCCGCCCGGCTGGCAAGACCAC 6174 29 96.6 32 ............................G TCAAAGGGGCGTTCTCCGCCAATAACCCGTCA 6235 29 100.0 32 ............................. CGGTAGTGGCCGGGCAGGCTCACGCCGACCCG 6296 29 100.0 32 ............................. AGTGCCACGCACTACACGGCCGCCACCATCGA 6357 29 100.0 32 ............................. GCGACCTTGATCCCGCCACCCGAATAGGACAG 6418 29 93.1 32 ........T...................G CACGAGGGGTTTAGGAACGCTGTCAATACAGC 6479 29 96.6 32 ............................T GGCACAATTTGGCCACGGTTGAGCACACCGGC 6540 29 96.6 32 ............................G CGTGTGACGGCACAGATCAAGGCCGATACCGG 6601 29 96.6 32 ............................T TTTGGGTATGGTGGCCGCCAGTGGGCGGAGTT 6662 29 96.6 32 ............................G AGCACGACGTCCTATATCTGATCACCGAATAA 6723 29 96.6 32 ............................G CCATGCCGGGTATCGTGACGGTGGTGGATGAC 6784 29 100.0 32 ............................. GTCATCTCGCATATCGAGGCGACGAACCACGA 6845 29 96.6 32 ............................G TTCGCGGATCTTACGAGCGGTTTGCGTATGTC 6906 29 96.6 32 ............................T TCCACCGAAGAGAGTCCCACACGGCGAGGTCT 6967 29 100.0 32 ............................. GGGATCGAGCAGACGATTACCGCGACCGGCGT 7028 29 96.6 32 ............................G CCGGGCCTGCAGTGGTGGCGCGATATAACCGG 7089 29 100.0 32 ............................. GGTTTCTACCCACGTTTTAACTACTTCAAGTG 7150 29 100.0 32 ............................. ACGCACATGTGTGAAATGTAGCGGCGGGCGTG 7211 29 93.1 32 .............G..............G CCTCATACAATGCGCCGATCCTGCCTTTCAGT 7272 29 96.6 32 ............................G ACGCGGGAAAGCTCTTGGCCTCGTGGCCTGGT 7333 29 100.0 32 ............................. GCACACGTGTCGTAAGTGTCGCGGGTCGCGCA 7394 29 93.1 0 ..........................T.A | C [7419] ========== ====== ====== ====== ============================= ================================ ================== 57 29 98.0 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAAACATCCATTGGGCCATTGTCAGGTAGGCCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAGTGCTGGTCAGCAACT # Right flank : AGTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTACCCTCACAATCGCCAGGCGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCAAGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //