Array 1 1603652-1598902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENQH010000001.1 Clostridium perfringens strain CHD3813P CHD3813P_seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1603651 29 100.0 36 ............................. AAAGATAATTATGTATTAAATAATTTAGAAAAATTT 1603586 29 100.0 36 ............................. TTTGTAGATATTCTTAAAGACCTTCATTTTAACCTT 1603521 29 100.0 37 ............................. TGGAAATATATATTTGCTTCTGCAATTCTTCTAAGTC 1603455 29 100.0 37 ............................. CTGTTTAAACACATACCATCTACAACAATCCAAACAA 1603389 29 100.0 36 ............................. TAAATATTTAATAATTGTTTAAATATACTTTCAAAA 1603324 29 100.0 36 ............................. GAAGAAGCAGAAGAATAGAGAGGGGCATATGCCCCT 1603259 29 100.0 37 ............................. TTATCTACAAATGAACTTTGTAACATTATGTTGAATT 1603193 29 100.0 37 ............................. TTACCTTTTAAGCTAGTATTTTCAGTATCTAGAGTCG 1603127 29 100.0 37 ............................. GGTTGCGAAGCTATATTGGAATACGGGAATATAGATA 1603061 29 100.0 37 ............................. TGGGATATTGCTAATGGGTTTAAAACTTTAGTAGCTC 1602995 29 100.0 36 ............................. AGAAAGAAATCATCGAACCTATAGGGAAAAGCCAAT 1602930 29 100.0 37 ............................. GTAGTGGTAAGTCATTACATGTTGCTAGGGATATTTT 1602864 29 100.0 37 ............................. GTAAACTTTCTTAAAATTTTTAACTTTATAGCCGAGC 1602798 29 100.0 36 ............................. AATAAATCATTATCAAAATCTTCTTGCTCCACTTCC 1602733 29 100.0 37 ............................. TATCAAAAAGAATGTGAAGCTATTAGGTATAGAAAAG 1602667 29 100.0 37 ............................. AATAAAGAAGAAAGGCCAAAAAGTGCATTTGAAAAAA 1602601 29 100.0 37 ............................. GCTTTTAAGAAGGCATATATAAGAGCTTTTGACAAGA 1602535 29 100.0 36 ............................. GTAGATAAGCCTGTAGTTGGAATTGGTGAAAATATA 1602470 29 100.0 36 ............................. TTTATTGTTTTTATTCCTTCGTTATTATAAGAATCA 1602405 29 100.0 37 ............................. TTTATAAATTGATTATAACGTATATGTTGATAACTTT 1602339 29 100.0 36 ............................. TTAGTCCAATTGACAATTTTATCGTTTGTTATGGCT 1602274 29 100.0 36 ............................. TTCAAACTAACTAAAACAATAAGTAAAAACTAAGTA 1602209 29 100.0 36 ............................. GCTACTACAATTTATAAAGATTATAATTCAATTTTT 1602144 29 100.0 36 ............................. AGAAATTATCCGTTACGTTCAAAAGGCAGTTGGTTA 1602079 29 100.0 36 ............................. AAGTGTAAGTTATGGATCATGACAAATAAAAAGCCT 1602014 29 100.0 36 ............................. GATTTTATGGGGTATAACAAGCAGTACATTAAGTTG 1601949 29 100.0 37 ............................. CAATATTTTGAAGGTATTAAATCACTTGGAGAGCAAG 1601883 29 100.0 36 ............................. AAAGAAGTATTTAGGAGAGTTAAGCATTGGTTAAGT 1601818 29 100.0 36 ............................. TAGTAAAGTGCCTATTAATGTATTTGATGCTTTTGT 1601753 29 100.0 37 ............................. GTTAAAGATGCTCTTGTTAAGAATACTGAAGAAGCTA 1601687 29 100.0 37 ............................. GGGTTAATGGTGAGAAATGATAATCAATGGAATGGCT 1601621 29 100.0 37 ............................. AAAGTGCTTGTCTCAATTATGCTATTCATTATCTCAG 1601555 29 100.0 38 ............................. ATTATAGCAGGAGTTACCGCTGTTGTAGGTGCTGGAGC 1601488 29 100.0 36 ............................. CAGCTTGAAGAAGAAGTTAAGAAGAAATTGGATAGA 1601423 29 100.0 37 ............................. AAAGTTAAATTTGAAGTTACTTCTACGTGTGAAATTA 1601357 29 100.0 37 ............................. ATTGAAAGTACTGAAAATACTAATATTGAAGCAGATA 1601291 29 100.0 37 ............................. GTATCAAATGTATATGTAAATGGTACTTCATTAACTG 1601225 29 100.0 36 ............................. TTAATATGCGAAGATTATATAGATATGAGCGATTTA 1601160 29 100.0 37 ............................. CAATTATTATATTTCTGTAAATTAAAAGGCTAAGCAA 1601094 29 100.0 36 ............................. AAGGAAGTAGCAATAGGATGGAGAGCTAAGAATACA 1601029 29 100.0 36 ............................. TTATCCCACTAAATATAGAACCACAACTTGTACAAC 1600964 29 100.0 38 ............................. GGATTTATTAATAGATCTCCCAAAGGCTCCAATTAGTA 1600897 29 100.0 36 ............................. GGTGTAGAAGTTGGTATGGATAAAACAATGCCAGAC 1600832 29 100.0 36 ............................. GTTATAATAACCTTTTTTCTGAAATTTAACATAATA 1600767 29 100.0 36 ............................. TATCAACTCTATTATAGCGTTGAGCTGTATAATAAA 1600702 29 100.0 37 ............................. TGCAGAAGAGTGGGATTTTCATCCTGATTTCTGTTTC 1600636 29 100.0 37 ............................. ATATGTATGTTTAATGTAAATAGAAAATGGGTAGAAA 1600570 29 100.0 37 ............................. CTTCTAGCTCTAATATCTGCAATTAACTCATAAAGAG 1600504 29 100.0 36 ............................. TCACCAGAACATCTAGCTTTTATTTCATTAAATACC 1600439 29 100.0 35 ............................. CGTACATTTAAACTTTATAAAAATACTTCTGAAAA 1600375 29 100.0 36 ............................. TTAGCATCATAAATTTTTAATTGATACTCTACACTC 1600310 29 100.0 37 ............................. GTCAATTATTTACCTCCTTTCTCTCCAGATCTAAATC 1600244 29 100.0 37 ............................. TTATTTAAAGCTATTGCTTTTCTTTCTTTTAAAGCTG 1600178 29 100.0 37 ............................. TTCAATTTCCTCACAACTAACACACAAACGTATTTTA 1600112 29 100.0 37 ............................. CTCAAAGTAAAGCCCAAAAATTCTATAAACTTATTAA 1600046 29 100.0 35 ............................. GCTATTAAAGATGTTAAACCACCTATGTGTTGTCC 1599982 29 100.0 37 ............................. ATTACTTTTAACTCTACAAGCTTTAAGTAACTCTCTA 1599916 29 100.0 36 ............................. AGATTATGTTAAGAAACTTCAAATGGCTACTACTTG 1599851 29 100.0 36 ............................. CAATTATTTATCTATATTATTATAATAGCCAATATT 1599786 29 100.0 37 ............................. AGGGATTAAATAATCAGCAAAAGAAAAATCTAAAAAG 1599720 29 100.0 36 ............................. ACTAAGAAAGCAGTAGCTTTATTATTAAACAAATAT 1599655 29 100.0 37 ............................. AATGATAAGCCTATAGATAAGCCAGTAGATGGTACTG 1599589 29 100.0 37 ............................. GATGATAGTGATTGGGATTGGAATACTTTTATTGGCG 1599523 29 100.0 37 ............................. TGTTCTAAATTACTCATGTTAATATCTCCATTCAGCG 1599457 29 100.0 37 ............................. GATGAGGTTGAGGAGATCATAAAATAAGTATTTTAAA 1599391 29 100.0 36 ............................. GGTATTCTTTCATCATATTCTAAATGATTAGCTGAA 1599326 29 100.0 37 ............................. TTGCACACCTCTACTATTTTTGAATTACAACAATTGT 1599260 29 100.0 36 ............................. ATAACAATTAAAAATTTACACGCAAATAAAAAAATA 1599195 29 100.0 36 ............................. AAGACATTTGCTATATTTACTGATGATGGTGATATA 1599130 29 100.0 36 ............................. TACCTTTTAATTTATCTTTTTGTGCTTTATAGGTAG 1599065 29 100.0 37 ............................. CAGCTATTCGTATTGTGCTTTAAATTATTAAGAGAAC 1598999 29 100.0 38 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCATG 1598932 29 82.8 0 T................GAA....C.... | C,A [1598904,1598928] ========== ====== ====== ====== ============================= ====================================== ================== 73 29 99.8 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : ATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAATAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATACATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //