Array 1 802425-799772 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009513.1 Methanosarcina mazei LYC chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 802424 37 100.0 36 ..................................... CTTTTTTCATTAGAAAAAATTCTAAAGAAGTTTGAC 802351 37 100.0 37 ..................................... TACAGTTCCTTGAAATATTCCATGGTAATGTCTTTGA 802277 37 100.0 37 ..................................... CACTACTTCCAGCTTTCATAGCTGCGATTTTTATATC 802203 37 100.0 38 ..................................... AATACGCATCTATCCAAACCGCAATCGGTTTTGGAGGG 802128 37 100.0 37 ..................................... GAAATGCTGTTCTGAAGAGCGCTAAGGCGTTCCCTGC 802054 37 100.0 35 ..................................... AGTCTAAGCCAACAATTCAGGAAGCAAAGCAGGCA 801982 37 100.0 36 ..................................... GACATATATTTAAGCCTCCTATATACTTTAAAACCG 801909 37 100.0 36 ..................................... AAAAATATATTAACTACTGTGCGAGGTTCTGCTCCT 801836 37 100.0 34 ..................................... TTCATCTCCTCGATTTCTTCCATCTTGTCGTCAA 801765 37 100.0 34 ..................................... TAGGTCCAACGTTATCAGGTCGCATATTCGCGAA 801694 37 100.0 36 ..................................... TCAAAAACAGTTTTCTTCCCATCTCTACCTGATTGT 801621 37 100.0 36 ..................................... GAAGCTGAATAATTAGCAATAGCTTTTGCTACACCT 801548 37 100.0 34 ..................................... TAATTGTGTTCATAAATACGCATAGTGTTTGTAA 801477 37 100.0 36 ..................................... TGTCTCTATCTCGAACAAAAGTTACAGAATTTTGAG 801404 37 100.0 34 ..................................... CGCTCAGGAACTCTCTAAAAAGCATAACATGACA 801333 37 100.0 34 ..................................... ACAGACATGACAGAAAGACTACAAATACAATAAT 801262 37 100.0 37 ..................................... ATCTTCTCCTGAAACCCAACATTTCCGAAAATATCAT 801188 37 100.0 36 ..................................... TAATATAAACGTGGTCGCTTGCTTCTATATTTCTAA 801115 37 100.0 34 ..................................... TCGAATACGTCAGTATGTGCAGAATCAATAAGGC 801044 37 100.0 36 ..................................... CCCTGATGTCTGTTCTCGTCGGGTCCGATTACCATA 800971 37 100.0 37 ..................................... CCAAATACGACAAGTACATCATATCGTATTCTGGCGG 800897 37 100.0 36 ..................................... GTTTCTTCAACTATTCTATCAGTGAGATTATAAAAT 800824 37 100.0 37 ..................................... TTCAGTTCAGTTCGGAAGACAGTTCTATCAATATCTT 800750 37 100.0 37 ..................................... ATGAATATGATCCATTATCTAGAGACAAGTGAATCTG 800676 37 100.0 37 ..................................... ATTATTACTCAACTTCTTTAAAAAAAAATTAAGTAAC 800602 37 100.0 36 ..................................... AATACTCTGTTAGCGTAATTGATAGCTACTTTCTTA 800529 37 100.0 37 ..................................... GTCTGATGAAAATGTATAAAAACGGTCAATTGGATAA 800455 37 100.0 35 ..................................... CTCTACTTAACCCATTACTAGAATTTTGGATAATG 800383 37 100.0 35 ..................................... TCACATATGGGTGACACCATACTTAGCTAATTCAG 800311 37 100.0 34 ..................................... CAGGAACTTCAAGTAACACGATTAAAATTAATGG 800240 37 100.0 34 ..................................... AACATCTCAACCCGCAACGGTGGTATAACATCCG 800169 37 100.0 34 ..................................... TCCTTATTGTAGAATTAGAAATTAGAATAAGGAA 800098 37 100.0 35 ..................................... TTGAGTATCTGAACAAAGAAAAAGCAAAGGATGTC 800026 37 100.0 35 ..................................... ACTGGATAAGTAACCATATACAATAGAATACGCAT 799954 37 100.0 36 ..................................... TTGAGTTCCGGCATTAGATCAATGTAAGGAAAAACT 799881 37 100.0 36 ..................................... AGGGGTGTAAGGGGGAGGTTGTTGAGATAAGACTGA 799808 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 37 37 100.0 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : GAAAGCAACGTTTTTATTGCCTCAAAAGAAAGCCATATAAAAGGAATAGTAGATGAAGTCCTGTTTCTGGAAGACGGAACTGCAGCTCCTCTCGAATATAAATTTGCCGAATATAAAGAAAAGGTCTTTAAAACTTATAAGTTTCAACTTGTCCTGCAGGCACTTTTGATCCGGGAAAACTACAATATTGAAGTAAATCGTGCGTACCTTTGTTTTACTCGCAGCAACAGCCTGGTGAAAGAAATAGAAATCAGCGCTTCTGATTTCAAAAAAGCCGATAAAATAATACAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGCAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAAGGGATTTTTCTTGTATTTATAAAGGGTTTGATAATATCCCAACAAGAATTTTAGTCCCAGAATTGGGCTCATCTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CAGTTTTCCGGTGATGCCTTTCAGGCCTGAATAGAATCAACATTAGCAAACTTTAATGTATATCCCAAATTCCGCGGTATTTTTCAAAAATCAATGATTTTCTCGATAGCGTTTTTTAAACAGAGTAAAGTAATTTTGGTCCCTGGTGGAACTTGGCGAATATTGAATGATATCGTTTTTTGGTCTCTAAATACACCATATTATTACTTCTGGGCAATGTCGTGAATTTGCTGTAATTCCAAGTTAATTTTTAGGAGACTGTATGCAAAACCAATCTATCGGTCTCGAATTTTTGACTCAAAAACTTCTTAAATTTGTAATTTTACAGAAAAATTGACACACTACCTGCTTTTGCCTACTGCATAAAAGTCCAATAAATCCACTTTTAATTGAAAATCGATAGCAAGAACAATTGTGAATATTCTAAACTTTACTGCGGAATGTGGGTATATTTATTTATTCTATTATAACATATTATAATACATGTCTACTATAGCTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 1604387-1612671 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009513.1 Methanosarcina mazei LYC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 1604387 37 100.0 34 ..................................... CCTGAATGGTGCGCTCCAAGTCGGGCGGATCCAT 1604458 37 100.0 38 ..................................... TCGGAAATGATGTCCCATCCGATACCGGACAGAAATAT 1604533 37 100.0 40 ..................................... TCAGATCGGTTTGCCGGTCTGCGTTTCCATCGAAATGGAT 1604610 37 100.0 37 ..................................... CTGCTCAAGATGCTGCCAAAGCTATGACTCTGCTAGG 1604684 37 100.0 35 ..................................... GAAACTTTAAATTCAATTTCATATGATACCTTGAA 1604756 37 100.0 36 ..................................... AATAATCCTCAATTCCACCGATTCCATATTTATCAG 1604829 37 100.0 38 ..................................... TATTATGTGTCGTTAATGCCTTGAGTGTGTCAGAGAGA 1604904 37 100.0 38 ..................................... ATTAACGCTTCTTGTTTTGTCTCTCCCAATTCTTCAAG 1604979 37 100.0 33 ..................................... CTTCTTACAGTCTGGCAAAAGAAGGGCTTGACA 1605049 37 100.0 35 ..................................... TTGCAGTTTTCACTAAGCGGTTCATGTTTCCTACA 1605121 37 100.0 36 ..................................... TGGATGTGTAGCCCACTCTTTCCAAGCTTCCATATC 1605194 37 100.0 36 ..................................... GATGATATCAAAATAACAGGCTGGAATTATACGGTA 1605267 37 100.0 36 ..................................... TACTCCCTTAGTGTAGAGGTCAATCACGGAGGGCCT 1605340 37 100.0 37 ..................................... ATATCCGGCGTGCTGCAAAGCCTATAGACCACAGAAC 1605414 37 100.0 37 ..................................... TATAGGTGTAAAGACTTATAGTAATTTGTAAGATAAT 1605488 37 100.0 37 ..................................... TGCTTATGAGCAGATGCAGGCTGAAACATGAAAGAGC 1605562 37 100.0 36 ..................................... TTACAGGCAACCCTCCAATTACTATCCCCCGACTGC 1605635 37 100.0 34 ..................................... ATAAAACCATAGAGGACTATGGATATACGCCTAA 1605706 37 100.0 35 ..................................... CCAGTTCGATTCTACTGCTCCGGCATCGCTTCCGC 1605778 37 100.0 37 ..................................... AGAGAGAGTTGACTATCTTTGCAGTTTTCTTAATCTT 1605852 37 100.0 34 ..................................... ATACCTACACTTCAGCACAAGCGGGGGCCTATGT 1605923 37 100.0 38 ..................................... CTACAGGGGGTGGTAAGAGTGCTTGGAAAGATGTAAAA 1605998 37 100.0 35 ..................................... CAGGAGATGCTACAGCAGAAATTAAACTCGATGAT 1606070 37 100.0 36 ..................................... AGTAAAATGCAATTAGTAAACCCAAGTGATAAAATC 1606143 37 100.0 36 ..................................... ATAAATTGCAGAATGGTGGTGTAAATGATAAAAGTG 1606216 37 100.0 36 ..................................... CTGAACCCACCGGAACCCCCTTTCGTGATATACCTT 1606289 37 100.0 34 ..................................... CCAAAAACTAAAAGAGGTTCTGGAAATAATGATA 1606360 37 100.0 36 ..................................... AAGCGGAATAATTAGCAATTGCTTTTGCTACACCAG 1606433 37 100.0 37 ..................................... AGAGCTTATTGCAGAATACAACCGTAACAGGCTAAAT 1606507 37 100.0 36 ..................................... TGAATGTATCTGCGAAGGCTCTCGTTCCTGGTGTAA 1606580 37 100.0 36 ..................................... TTGTCTGTTTTTGCTTTGAGTTCTCCCGTAGGTGTT 1606653 37 100.0 35 ..................................... TGCGAGAGTGTTATGGCGACGATCAAAAGCGAAAG 1606725 37 100.0 37 ..................................... TAACTCATCCAGGTTGTAGGATCGAACTCTTCTACAT 1606799 37 100.0 37 ..................................... GGCTGAATCTCCGAAACCAACCTTATATAATGATTAA 1606873 37 100.0 35 ..................................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 1606945 37 100.0 42 ..................................... AGTGCTCCTACTTTGATACACCTTCTGAATTCACATGGAACT 1607024 37 100.0 35 ..................................... TAAGCTTCAGCTTTTTCTCTTGCTTTTTGCAAAAA 1607096 37 100.0 38 ..................................... TCTCAGTCCTCGATATCCAAGGCGAACACCTTTAAAAA 1607171 37 100.0 35 ..................................... TAGAGTAATTGACCCAGACGTCTGGGTTAAGGTAG 1607243 37 100.0 38 ..................................... GAGAATGGACTTGTCCTTCATGTAACACTTCCCATGAT 1607318 37 100.0 34 ..................................... ATAAAATATATCGGCATGCGTATCCAGAATTTCA 1607389 37 100.0 34 ..................................... TTGGAGCTACATACGGATTGGTGAGAACTATATA 1607460 37 100.0 35 ..................................... GAACTCCTGCACAAGTCCCCGGACTCCGTAACTGT 1607532 37 100.0 36 ..................................... TCAGGCCATTTTATAGCGGACGATGGGCGGTAAGAT 1607605 37 100.0 37 ..................................... GAGGTTGAGTTTTCCGATTCCGGGCGAACGGGGCAAA 1607679 37 100.0 36 ..................................... TAGGAGTATGCAGCATTAGCGGGTTAAGTGTTGCGG 1607752 37 100.0 35 ..................................... TTTATAGTATCATAAAACGTGATGTCAACACAGCC 1607824 37 100.0 41 ..................................... TCCAGCAAAACATTATACCCATACCTACTGCAAGAAAAATC 1607902 37 100.0 35 ..................................... CAAGATAGCAAAATAGCTCTGAGCCAGCCCGACTA 1607974 37 100.0 36 ..................................... TGCAGCTGGTCAGGCTCCGGACCTGTCAGCAATGAC 1608047 37 100.0 37 ..................................... AACATATAGATTAAAACTATATGACAGAAGAAAACCA 1608121 37 100.0 37 ..................................... ACAAAATTGCGGTTAGTAATGGTGTTTTAGATGTTGT 1608195 37 100.0 35 ..................................... CAAGGACGCCATAACATTTGTTAATTATGCTAAAG 1608267 37 100.0 37 ..................................... ACCTTCCCGTGGTCCTTGCCGGGGATACCCCCCTGGA 1608341 37 100.0 36 ..................................... CTCTTTTTTTTTGTGCTGTTAGAAAATATGTCCCGA 1608414 37 100.0 37 ..................................... ATTACTGCTGTTTTACCGTCTGTTGTGGATCTCAGAG 1608488 37 100.0 36 ..................................... TGCAAAAGTATAGTAGATCAGTTTGGAGCTTGACCG 1608561 37 100.0 36 ..................................... TAGATGCAACAGGCGGGGTTAACGCTCTCACAACTT 1608634 37 100.0 37 ..................................... TGGAGGGTCACAAAACTGTATAATGACCTCTGCAACG 1608708 37 100.0 47 ..................................... TATATGTATACGTACTATTACGTATATCGAATAAATTGAGAGGTCAA 1608792 37 100.0 35 ..................................... ATGCCTTTCAGTTCTCTTTTTATGTTTTCTAGCTC 1608864 37 100.0 34 ..................................... TTACTACATGGACACTGTGACCCCCATCGGCTAA 1608935 37 100.0 34 ..................................... TGATTGTACCTCTCATAACACACTATGTTTTCTT 1609006 37 100.0 35 ..................................... GCAGTCTGGCTGGCTTCCATGATACGAAGCTGTTC 1609078 37 100.0 35 ..................................... CCAAGCCTCTTATCGAGACTGTCCAAGGCTTCTGT 1609150 37 100.0 35 ..................................... TCCAGGGAGTCAAAAACGACGGGACAAACTACGAC 1609222 37 100.0 37 ..................................... TTACCCTGAAATGAAACGGTCACAGGAAACCCAAGAG 1609296 37 100.0 38 ..................................... CCACTTTCCAGTAATGGGGAATAGTCGCCCTATAACGG 1609371 37 100.0 36 ..................................... TTAATTCCGTTTCCATATCTGCAATATAAAAAATTG 1609444 37 100.0 36 ..................................... CTGCGTCGCCTACCTTGTCCAGGTTCCAGGCTCCAG 1609517 37 100.0 34 ..................................... ACGCAGACGATAATTAAAAGGGATTCGCTCAATG 1609588 37 100.0 35 ..................................... TAAATGTAGATACAACCTCAGATTCTTTTATCTGT 1609660 37 100.0 37 ..................................... TGAGATTGTATTTTTTATATATTACAATGTTGTCCCA 1609734 37 100.0 36 ..................................... TCAATAGCGGACGACGGTAAAAGCGCAGTAGTACAA 1609807 37 100.0 36 ..................................... GAAAATACCTGTATGCCTCCAAACGCTTGATTTTCG 1609880 37 100.0 40 ..................................... TTTTCTGGTTCGATTTCTGGCATATCTGAGCCACCAGGTC 1609957 37 100.0 35 ..................................... CACCTTTGAGAGTCCAAGAGCTTCCAACATTGCGG 1610029 37 100.0 35 ..................................... ACAAAGAACCGGAGCCCACAAAATGACAGAAAACA 1610101 37 100.0 35 ..................................... AAATACCGCCCTGCCAGTCTATCCCGTTATATCCG 1610173 37 100.0 34 ..................................... CTCTGGTCAATGTTTGCAGGAGGGACCAGGTAAA 1610244 37 100.0 35 ..................................... TCCAGGTCCAGCACTTAGAAGGATATAACACATTT 1610316 37 100.0 35 ..................................... TTAACCGCCTTTAAACTCGCTTCAATGTGGGCTAT 1610388 37 100.0 36 ..................................... ATGTCTAAGTACCTGGAGGGGGTCCTTAACGGCAGT 1610461 37 100.0 34 ..................................... TTATTCCCTGGTATAGTTCATGCGGGAACAGTAG 1610532 37 100.0 37 ..................................... CACATGTTCCAGCAAATCCGCCTTGTACTATTTCCGG 1610606 37 100.0 36 ..................................... TTTTATCAGGCGGGCTGGATTCAACCACTCTTTTAT 1610679 37 100.0 34 ..................................... TTCGTTTGCAGATATTCCAATATTCTGTCTCTGA 1610750 37 100.0 36 ..................................... ACATATGTCATTTTTTTAGCTCCTGTTCATTGAATC 1610823 37 100.0 37 ..................................... ATACTCTTAATATCCTCCAGCATTTCCGGGGATAAAT 1610897 37 100.0 35 ..................................... CGAGAAAGGGCGGTGTCAATGTGGTATTTTCCAGG 1610969 37 100.0 35 ..................................... GGATAGCGTTTACTATACTGTCGAACCTGGACCGG 1611041 37 100.0 35 ..................................... AGCCTTAGTTTTGCGGTCTGGTCCCCTGTGAGGAT 1611113 37 100.0 35 ..................................... ATCCTGGTTTCAATGGAGATAGTAAAGGGAGAGGG 1611185 37 100.0 36 ..................................... ACACTCTATATAATGCATCTAGGTCATGGTCTAGAT 1611258 37 100.0 36 ..................................... ATAATCATTTTTCTTCACACTTCTTTAATCTCATCT 1611331 37 100.0 36 ..................................... TCACAAAAGGGTTAATAATTGAGGCCTGCTGTTGTC 1611404 37 100.0 34 ..................................... CTGCAGTATTCTTTCTGAATATTATCAGTAAAGA 1611475 37 100.0 35 ..................................... CTTTTGAAGATATAAGCAAAAGCTGTCCTTCGACG 1611547 37 100.0 37 ..................................... GGAAACACAGGATTTAAATTAAGATCGCTTCGGACTC 1611621 37 100.0 36 ..................................... GCCTGTTCGAGTGCCTCATCTTTGAGGGCAGTAACA 1611694 37 100.0 35 ..................................... AGCATTGTATATCTACAATGTAGCAAAGTATATAT 1611766 37 100.0 36 ..................................... TTATAATATTGAATGTTTGAACATCTGTAAAACCGA 1611839 37 100.0 36 ..................................... TGTGTTGTTTCGATGTTTTCATCGAATTCCTGGAAG 1611912 37 100.0 32 ..................................... CAAGTAAGTGTGGCAGGAGTCCCAAAAGTAAC 1611981 37 100.0 36 ..................................... CACATTAAAATAATGAAATCTGTATTTGCTTTCAAC 1612054 37 100.0 37 ..................................... TCGTATACAAAAGACTTATTCTCTGGCATATAATTTA 1612128 37 100.0 37 ..................................... AGTCATCTACCCTGATTGATTGATGGGGGCGTGTTAC 1612202 37 100.0 35 ..................................... TGATACCGTGCAGCATAAGAATACGGATGCCCACA 1612274 37 100.0 35 ..................................... CAATTTCGTTTGACATTTTATATATCTCCTATAGG 1612346 37 100.0 35 ..................................... TACTGTTCGGCGGTTCTTCGCATTGTTGCGTCAAT 1612418 37 100.0 35 ..................................... AGAAATTCAATACCTCCGCACAAGATCAGATATTG 1612490 37 100.0 36 ..................................... ACCGCTATTGTACCGGTGGCAGGAGTCCAAGTCTTG 1612563 37 100.0 35 ..................................... TAGAATACAAAGCCAAAATACAAGGGGTTGAGGTT 1612635 37 97.3 0 .....C............................... | ========== ====== ====== ====== ===================================== =============================================== ================== 114 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCGAAATTTAAAAATATATCGCTGGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATATTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAGAAAAATAATTCAATAGTCCATACCAGATTTCAAAACCCTTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCGGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : CTGAGATGCAGTAACACTATATCTATCCTGAATCAAATTCGCGAGCAAGATCCACTAAGTGCCTATCCGAAAAGTCCCGCTGCCCTAAATGTTATGCATGCACATGCTAACTGAAGCATCGCATAGTAATTCTCAATCTTTTTTTCCCATCTAATAAGCAGCCTTCTGAATCTATTGAGCCAGGAATGTGTCCTTTCCACAACCCACCTTCTTGCTCTGTAACCTGGTATCTCTTTTTTTCTTATGTTTTCTTCTCCCCTTCTTCTTATATGTGCTATATATCCATATTCTTCAACCAATTCTCTGATATCAGGAAAATCATATCCCTTATCCATACAGATATTCTGAATTCCCTCATCTAGAGAAGGTCTTTGAAAAATAATGGCATCAAGAGTTCCTTTTACAAGCTTTTTATCGTGACGATTAGCTCCATCTACAGTTACCGAAAGTGGTATACCTTTACCATCTGTTAACAGACTCCTTTTTGTACCTTTTTTACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 1613665-1614962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009513.1 Methanosarcina mazei LYC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1613665 37 100.0 38 ..................................... TATTATCTAACATTTCATCATCAATTGAAATATAATCA 1613740 37 100.0 35 ..................................... TTCTACCATCAGAGAGTTTACCACACACCATACTG 1613812 37 100.0 36 ..................................... TACGGACACCATTCCGGTTCACTCTCATCAAAGCAG 1613885 37 100.0 36 ..................................... AAAATAGTGTAATAACCGGCAGCAGTACCCTCGGTA 1613958 37 100.0 38 ..................................... CTGTTCACAGACTTGTAGTATTTGGCTTCCGAAGGTGT 1614033 37 100.0 38 ..................................... TTCTATAGTAAATAATATCTCACCCCATGTATAAAAAG 1614108 37 100.0 37 ..................................... TTATATTACGGAAATGGAAGCGTAACGTCTGCAAGTG 1614182 37 97.3 38 .....T............................... CAGGGTAATTCGGACTATGCCAGGGGCGCCAAGATAGA 1614257 37 97.3 38 .....T............................... CTTTCCGGTCTTCAATGTTTATTGATGAAAGTTTAAAA 1614332 37 97.3 37 .....T............................... AACATTTCCTCTGAAAGTTTGTGAAGTACTTCTTCGG 1614406 37 97.3 38 .....A............................... AGTCCAATAATCCCATTATCGGAAGCTGCAACCGCCCA 1614481 37 97.3 32 .....A............................... AGACCTATAATACAGAGATAGCGCATGGTCGG 1614550 37 89.2 35 TA.......A...T....................... TTTTTCCCAATTTACTTCCTCCTCATTGAACATTT T,GT,C [1614553,1614560,1614564] 1614626 37 81.1 39 GG...A...T.GCT....................... GATTTTGCGTTTCCTTCTCCCATAAAGCTGGAAGTATTT A [1614631] 1614703 37 81.1 37 TG...A...T.GCT....................... GGATTATTAGTTGAAGTATCCGTGAATTGGACTGTAA A [1614708] 1614778 37 81.1 36 CG...A...T.GCT....................... TTTTTTATGTTGTATCGAGCGAGTCCGTTAAATACG A [1614783] 1614852 37 81.1 34 TG...A...T.GCT....................... TATTTTGCTAAACAATACTGCGTTCAGCTTATCA A [1614857] 1614924 37 83.8 0 .....A...T.GCT......................G | G,A [1614926,1614932] ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 93.5 37 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTTACCACGGTCAGTAGGATTAGCTCCTGTTCCAGCTCCACCCAATGGTGCTTTTGTCATGGCCCCATCAATTGCTTGCCATTCCCATTCTAATCCTTTATTTTTGTCATAATCCAATAAACCAGCTTTCCACATTTTCTCAAATAAGCTTGATTTTCGCCATTCCTGAAATCGATCATGTACGGTACTTGGGGCTCCATAAAATCGTGGCAATAATTTCCATTGGCAACCTGTAAGGAGTACATAAAAAATACCACTCATTATTTTCCTATCATCCTTTCTAGGTCTTCCAGGCTTCTTTTTCGGTTTAGGGAGTGGGAGTAGAGGTTTGATTTTATTCCACAATTTATCAGAAATCTCGTAGTCGTGCCCGTTTTTTCGTCGTGTCACTAATAAACATTACACAATATCGCAGTTATTCTACTTTTCGGATAGGCTCTAAAACAAGGATTGAAACAGGTTCTTGCACTGTGTGAAATCTTCTGCCCAGCAGTCTATTT # Right flank : GTTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 8.53 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-48] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 4 1628084-1631113 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009513.1 Methanosarcina mazei LYC chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1628084 37 100.0 37 ..................................... GAAGCAAGTAAGGACTAATCCCCGCCATTTCAATGGT 1628158 37 100.0 38 ..................................... GTCTGGAATTGTTCATATCGGATGCTTTCTTTTGCTCC 1628233 37 100.0 36 ..................................... GAGTGTCTAATTCTTCTCTTGTGAGATAGTCCACTG 1628306 37 100.0 37 ..................................... TTGTTAGCTTCGATTGTTGCATACCCGGATTCATAAT 1628380 37 100.0 34 ..................................... AAAACATGTACATAAACTGTAGCTTCCGTATCTC 1628451 37 100.0 34 ..................................... TAGTCCCCTACCTGCTTATATGGCCATTTCTTCG 1628522 37 100.0 36 ..................................... ATTCGTCTTGGTCTTCGTTTGGAGCTTCAGAAACTT 1628595 37 100.0 35 ..................................... AACTTCCAAAAGTGTCGGACTCTTCCAGTAAGGTC 1628667 37 100.0 37 ..................................... TCTCCCTGGTAATGAGTTTTACATGGGTCATACATCC 1628741 37 100.0 35 ..................................... ACAAATGTTGTCTCTGGATGAAATCAATATCTGGT 1628813 37 100.0 33 ..................................... CTCGAAAGGGTATCCTGGTCAAACTTGTAGATT 1628883 37 100.0 35 ..................................... CATGGTGGGTTTTGCCCCCGCAACCGATGCTACAT 1628955 37 100.0 37 ..................................... GGTCACTTCGTACGACCGCTGTGAAGCCGTTCTCTCA 1629029 37 100.0 36 ..................................... TTGAGAAGAAAGACATGGGGTTCGATGAATATATAT 1629102 37 100.0 36 ..................................... TATGCGCACAGATGGGGCATATGGATAATTTGGAAG 1629175 37 100.0 37 ..................................... ACTCATTACAGGCTTGAATCTCTGGATGACCTGGATG 1629249 37 100.0 34 ..................................... ATTATATTTTCTGTGCAATAATATTGTTTTTCAA 1629320 37 100.0 38 ..................................... AATTCTGACGCGCATGTTTCCAAGAAGCATTCCGAAGA 1629395 37 100.0 34 ..................................... CAGACAATATCAGCAGGTGGAAAGAGGGGGATTT 1629466 37 100.0 35 ..................................... GGAAACTTCTTAATAGTTTGCTTCCTGATTTCTTC 1629538 37 100.0 36 ..................................... TGGGACCATCGCGGACACCGGAGCGACCACAGTAGC 1629611 37 100.0 35 ..................................... ATTTTTTTCTTCGCGCATGAGTACAAACATTTATA 1629683 37 100.0 38 ..................................... TAATCAATATCAAGTTGGTCCCATATGGCAATATTATA 1629758 37 100.0 40 ..................................... ACCGTGATGTTGAACCATTTGTTTTCGATCTCAATAATTC 1629835 37 100.0 36 ..................................... CCTAAATTCGTAACTTTGGCCTTGATATATTTCGAG 1629908 37 100.0 36 ..................................... TGTTAACTGGGAACAGAAAACAGCTATTGTTGAAAC 1629981 37 100.0 35 ..................................... CTAATGGGTTTTCATGGGCCCGCATCGTTTCAATG 1630053 37 100.0 36 ..................................... AATAGTTGAATGGATTAAACTGGCATTTATTGGCAC 1630126 37 100.0 38 ..................................... ATATACGACCTCATATGTCAATCACCCTGACATCAATT 1630201 37 100.0 36 ..................................... CTTTCATTTCCCTCACACCCTAATTGGAATCAAAAA 1630274 37 100.0 38 ..................................... CATTGTTAATGAATATACGTTACAGTTAGGTCTGTGTA 1630349 37 100.0 37 ..................................... TCTTTCTCAGTAAATGTGAAATGCTTCTCAAACTCTT 1630423 37 100.0 37 ..................................... TTGGGTGTATAATCCACCCTGCTTCTGTGTATAATTG 1630497 37 100.0 35 ..................................... TTTTGTAAGTCTAATTCATCCCGTATCCATGCCGG 1630569 37 100.0 35 ..................................... AAATCGTGGGAATAATCACAGATCAGGGGCTTGAG 1630641 37 100.0 35 ..................................... AAGATATGGTAGATAAGCACCATATCATACTAAAA 1630713 37 100.0 37 ..................................... ATCCGCTGAACCGGTCACTCCCTACGAGAGACGCACC 1630787 37 100.0 35 ..................................... CCTATGTAACCATCAACCAGATGGAAATCAAGAGT 1630859 37 100.0 35 ..................................... TTTCAGGGTTTGGAAGGGTCGAAGGATTGACTACT 1630931 37 94.6 35 .............A....T.................. CTGTCTTTTCAATCTCAGTTAGTTGTTTTGCAATT 1631003 37 86.5 37 .....C.......A..............A..C....T GCAGACGAAAAACGCAAATAAGAGAACAGACAAAATC 1631077 37 86.5 0 .............A....T........A.....G..T | ========== ====== ====== ====== ===================================== ======================================== ================== 42 37 99.2 36 ATTCGTGAGCAAGGTCCACTAAAACAAGGATTGAAAC # Left flank : AAACCTTTGAATGAAACAATAAAAGGTTCATCAAATATAGTTATCACGCAGTTTACATGTCTCTGAATTTTGGAGAGGTAACAATGAGTATGAACGAAAAAGTTGTCAGGCCTGAAAATAAAGAGTGGCATATGTAATATACTTCCTGTCACACCTGTGCCAAAAAATACGGAATTACGTTGTTATCGTGACCGAAGTTTTAAGTAAAGTACTCTCACCTGCTTTCGTATGTCTTCCTGAGGAAGGATCTTCCCGCTTTTTTTCACACCTTCAAGATAAATTATATTCGCAGTAAACGTGAAAAAGAATATGCACAAAAAATACCATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCAAGATGTTTCTAAATTATTAAAAACCCTGTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTATCCCCAAAAAAGGACTCATTTCAGGCCTTTACTAGCCAAACAACGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGCTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCCAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATATGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATATTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGGTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //