Array 1 13794-11942 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZNR01000023.1 Acidithiobacillus ferrooxidans BY-3 contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================= ================== 13793 28 100.0 33 ............................ GTGTGTCAGTTCCTCGTAATATTTGGCCCTAAC 13732 28 100.0 34 ............................ GGATGCATGGCGCGGTTTCAAACTCGTTCGTGTC 13670 28 100.0 33 ............................ GGCAGTACGGACATTGGGGGCCGGTTCTTTCCC 13609 28 100.0 33 ............................ CTACACCCGGAACCCCAAGATCTTTTTCACCAA 13548 28 100.0 33 ............................ GAAAGCCTTTTATGCCATTCCCCCATCACCTGA 13487 28 100.0 33 ............................ GCGACATGGTGAGCCGTTCGGAAAAGTCGTATT 13426 28 100.0 33 ............................ ATAATGCCTTGGTTCCGCAGCGCCCAGTGGTCG 13365 28 100.0 32 ............................ GGTGGGCGGGTGGCCTCCGGTTCGCGGGGTGC 13305 28 100.0 33 ............................ GCATGGTGGCCATAGCTTGGCTTGCGTTCTGAA 13244 28 100.0 33 ............................ CATGACTGACTCCTTTCATATTGCTGCGAAAAG 13183 28 100.0 33 ............................ TGGCTTGCGCCAATGCGCGCAAAGCCGCAAACG 13122 28 100.0 33 ............................ AGAGGCAGGCAGACGTGGCTGCTGCCCCCGCTC 13061 28 100.0 33 ............................ CTAATAGGTTCTGGTGCGTCTGGCACAACCGCC 13000 28 100.0 33 ............................ CCAATGAGTAGCTGAATAAGCCACTGCTTTAAC 12939 28 100.0 33 ............................ CAAACCCGCCGCATCGTCGATGGTAAGCGCTCC 12878 28 100.0 34 ............................ GCAATGGATACAGTCACAAAACCTGTGCGGTTTT 12816 28 100.0 33 ............................ GTTGCGGATCTCGAACCGCTTGAGCGCATAAAA 12755 28 100.0 34 ............................ GTGAGAACAGGTTGGCAACTTTCAACATTTCCGG 12693 28 92.9 34 .............AT............. GAGGACGATCCGATTGGCTAACTCGTAGCCCTCC 12631 28 82.1 34 ..A.....TA.G...........A.... GGTTCGTGGATCATTTGCCCAAAGGCTCCACCGC 12569 27 71.4 83 ..A...T.TA.G......T....-...C CAGGTCGTAGATCTTGGTGGGTGTATTCCCTACGCACGTGTGGGTAAAAAGATCATGACCAGGTCGGCACGGGTTATGTGGTC 12459 28 78.6 34 A.A....T...G.T.........A.... GGGGCTGTGAATAGTGACGCCGCCACCCAGCAGC 12397 28 78.6 33 T.A.....TA.G...........A.... GAGGACGAAGCAGAGCTGAGTTAATGGGAATGC 12336 28 78.6 33 ..AA.......G.T.........A.T.. GGAAGCAGACGGAGCAGGGTATTTCGGTGCGTG 12275 28 75.0 97 ..A.....TA.G.....T.A...A.... AGAGGGCGTTGTGATCCCAGCGCTGGTCAGAGTGTCTTCCCTACGCATGTGGGTGTATAAGGAATGAACAAAACTATCTATGATGGCAGGTCTTCTA 12150 28 85.7 34 ..A.........C.T........A.... GGCAAGCAGCGATGTCGTCGGCGACACCGATGCT 12088 28 82.1 33 ...C.........AT...T....A.... CGACACCCGCCACGACCGTGAACGGGCAATCTC 12027 27 75.0 29 ....A...T....AT..T....-....A CATGCCAAGGCCATCCATGTTGGGTCTGT 11971 28 85.7 0 ...........G.T.........AT... | T,G [11963,11967] ========== ====== ====== ====== ============================ ================================================================================================= ================== 29 28 92.6 37 GTCTTCCCCGCATGCGTGGGGGTCAAAG # Left flank : TGCATTTCGAGTGGTTGCAGAAAATCCTGGCATGTTTGGCCGCGATCTTTCCGGTGCGGTACGACGCGCATGTCGGGATTTGTTTGTTCGAGAGAGATTGCTGGACCGGTTGGTTACCATCTGCAAGCATTTGGTTTTCGGCGATGCCTTGGATTGTCATTAGTCTTTCCGCACCAAAACCCGCCTTGCGAGGATGGTTGAAACGATATCTGGTGGAGATGTCTCCAATGCTGTTTGTTGGGAAACTGGATGCCAGAACTTCCGCCCTGGTTTTTCAGCGAATAAGGGTGTCCGGAGAAAAAGCATCGTTAGCCACCGTCAGAAAAGGAGGCATAGGATTCGACATGGAACTATGTGGGTCTGGCAATGCCGTGTTAACAGACTTTGATGGACTTTTTTTGGTATCCACAAAGAGGAAGCAATCAGTAAAAGCGGAAGAAAAAATTGGCGATTTCGATAATGCCAATATTCCGCCGAGTAAACACTAGGTTACATGAAGG # Right flank : TGAACACCTAACTTCTGAGGAATTACTAAATGGACACCGAAAACCGCAAGGAGCAGAAGCGGCGCGCTGCAGCCCGAATCCGGGAGAAGCGACGCGCAATCGGCCTTCGTGAAGTCATTGTGTGGGCGAGGCCGGATCAGGCCAAGATCATCCTGGACGTCGCACGGCTTGACGAAGAAAAGACGCAGAAGCTGAAAGATGCTCTTACAATTATTACGCAACCGGAGATAACGTGATGAACAGCGGGGAAGAATCACACTAACAACCGAAACGTCTGCCCTGCGCGAGCAGGGATGAAGGATGGCGCAAACACCTGACGCGGTTCCATATCCAGTAGCCCCGTGTATACGGGGATGAAGACTTTGTTCATATTCAGTGCTCCTGATAGGTAAGTTCACCTATCAGGTTTGCCAAATTTGTGGGCGCGGCTATGGTTTTGCAGAATGGGCTACACTATGATCTATTTGCTAGAGCACGCACGCCAGCAGGAGGTGTGACAT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.63, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCATGCGTGGGGGTCAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [60-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 49934-50266 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZNR01000007.1 Acidithiobacillus ferrooxidans BY-3 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 49934 28 100.0 33 ............................ CAATGAAGGCTCCTGATACAAGCAAGGAGCCTG 49995 28 100.0 34 ............................ GGTTAGTGGCGCAGGGCGTCCACAACGCCCGTCA 50057 28 100.0 33 ............................ TGCCGACGCCTACGCCCGTCGACACATGGCCGA 50118 28 100.0 33 ............................ GCTGAATGGTTGGGCGATGGGGCTGAAGCCATT 50179 28 100.0 33 ............................ GCAAGGTGTGCGCCTCCACCCGCAAAAAAAGAC 50240 27 96.4 0 .......................-.... | ========== ====== ====== ====== ============================ ================================== ================== 6 28 99.4 33 GGTTGCCCCGTGTATGCGGGGATGAAAG # Left flank : CCAGATTTGCCGACGCCGCTGAGTTAATCCCTGATTTTTTCACATAGGAGCAGTCATGGAAGGTAAGCATGTGATTTCATTGTTAGTGGTATTCGTCGTCTTGTCGATCATGGCGATTACCATGTATCTAGATTACATAGATATGTTTGTTTGGTCTGCTATCCATCACCACACTGCCACGAGCCAGTTGAAGAGCGGTTTTCTGACTTTTTGCTTGCTCATGTGGAACATGAGTCAGTTAGCATGGCTGCCGATTTTTGTGAAGCTCTTTGCAAAAGACGAAAAGTTGTGCAAAGAAGTATCGAAATAAGGTGCCGTCATCACGGTGAAGAACAGAGCAATGACAGAGAGTTTGACATGAAATTCGTGAATCACGATAATTATACAGTAGTTGATTTTGATGCCTTACAGTTGATTTCGCGTAAACTCCGCCGAATTAAAAAATCGGTGGTTTCGGATGGGTCAAAAAACCCGTTGTGAAACGGTATGTTGTGAGAAGT # Right flank : GCCGGTGTACAGTTACCAGACCATGCCAAGGCTAAATTTTCGTCTTACCAGTGCAGCCGTGCTACAGTTTACTCATCGACATTACTTACACGACGAACAAACACAAGGAGCACAAAATGCAGACCCAGAAAAACCGCAAACCCTGCCTGATCATTTCCTTCGCCGAAGCCAAGCGAGAATGGGACGACCGGAAGGAAACCGAAAGCCTCGTAGATTTCGAGATCACTGAGGAAAACCAGGAGGCTGAACTCCGACTCCTGCAGACCATCTTCCCCGGAGAGTTCGAGGCCATGGTTCATTAGTCAAAAACGAGGCGGGTGGAGAAGCCAATATCCGGATTGCTGATACTGGCCGCATCCTGTAAGGATTCTACCAATGGGCATAACCAATCTCAGCGGCGCCATTGCCGACCGGACCTACGTGCCGGTCGAGGACGGCGCCGCCTGCGGAGATGCGACCATCTTGCCTGCCGAGGCCACCACGGACCAGCGAGAGGCCTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGTGTATGCGGGGATGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 47076-45610 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZNR01000012.1 Acidithiobacillus ferrooxidans BY-3 contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 47075 37 100.0 36 ..................................... CAGTTTCCAGTTTGAGCATATAACTGAGCGTCATGT 47002 37 100.0 36 ..................................... AATTGTATTAAGCACCGATTGCCCATAATTGGATTG 46929 37 100.0 36 ..................................... CCGGTTGCATTCACGAATGCGCCGATCATTTCTCAA 46856 37 100.0 35 ..................................... TCGGCTTCGGGCGCGTGGTATCCGCATTTCATCCC 46784 37 100.0 35 ..................................... TCCGTATCACTGTCAAGCGCCAGAATCCCTAATAT 46712 37 100.0 35 ..................................... AATTCGTGCCACTTTGAAAGCGACATTGGCAATCA 46640 37 100.0 33 ..................................... AGCTTGGCCCTGAGAGCGTGTAAGGCGTCACGG 46570 37 100.0 34 ..................................... TTTCCACTTCCGCGCATTAAGCGCAAATGTCGCC 46499 37 100.0 34 ..................................... AGAAAGTGGGCTACACGGGATTTTCGGGCTCCGT 46428 37 100.0 34 ..................................... AGTTTAGCCCTCAGAGTGTGTAAGGCGTCACGGG 46357 37 100.0 34 ..................................... CGGCTTGTCTTTCATATCGTGGCCATCCCCTTGG 46286 37 100.0 34 ..................................... CAATCTCAGAGAAGATAAAGATAACCCCATTAGT 46215 37 100.0 33 ..................................... AGAAAAACTCTTGAATATCTTCCAACCAAATAG 46145 37 100.0 35 ..................................... GCGCTGAAGTATTGGCCACACTTGTTTGCCCGGCG 46073 37 100.0 34 ..................................... ATGCCAGCGGCAGCCGTCGTCCTCAGCGTCGCAG 46002 37 100.0 35 ..................................... AGATGGTGCGGCGGTGGCATCTGCCTGGGTGGTGA 45930 37 100.0 34 ..................................... TGGGAAGCTGGCTCTGAGTTCACGTTGCCCGCTG 45859 37 100.0 36 ..................................... TATTTGCAGGGACTGGGGGCGCTCAAGGCCAAGGTT 45786 37 100.0 33 ..................................... ATCGGAACCACCAATGACGAAACGTGGAATCGA 45716 37 100.0 33 ..................................... AAAGCGAACCTGGCGCAACTGGAGACCTATCTT 45646 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 21 37 100.0 34 GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Left flank : CGTACCTGAGCCGTTGAGGAGGCGTAATCATGCTCATCATCGTCACTTACGATGTCTCTACAGAAACGGCGGCGGGGCGCAAGCGCCTGCGCCGCGTGGCCAAAACCTGCGAACGGGTTGGCCAGCGTGTGCAGAAATCTGTTTTTGAATGTCAGGTCAATCAAATGCAATACGAGGCTTTTGAGCGCACGCTGCTGGCGGAAATAGACGAAGAAGAGGATAATCTACGCTTCTATCGTCTCACAGAACCCACCGAACTGCGTATCAAGCAATATGGAACCTTCCGATCTATCGACTTTAATGGTCCCCTCATGGTTTGATGCGCGAACCCGGATCGGCGTCTCAAAGCCAGTCCTTTCGCGCGCCGCGTATCTTTCTGTTCTATCATCGTTTTTATTAGAAGTCCTTGGGGTCCTTATAGGTTTTCAGGCTGCCCTGTCTGCCGTTCGCGGCATACGCAGAGAAAATTGTTCATTAACAATGTGTTGCAACAATGGAGT # Right flank : TCCTTATCCACAAATTGCGTATTCCGGCCGCATCCGGCCACCGATTCCATAATCTGGATCACCTGATCCTCAGCGCCTACAGGCTAACTATCGACGGAGAAGCCATGCGGAAGAACTTGCGGTTGACCCCGTCGGTCCAGTCGGCGTAACGTCCTTTTACCCGTGTCGCAACGCCCCGCCCGCCCCGGCCGAATGGCCGCGGACAGGGTGGCAGGATCATCGTGGAATCAGTGTTCGGATGTCGATGGATGGAGTGGCGGAATGGCGTGGAACACGCATGGTATGCGCTGGATTCGGAGTGCTACTGGTACAACGGAAACATGAGGACTTACTATTGACAGCACATATCAGTCAGTCCGTTGCCCTTAATTTCTGGCGCCGTCTGAGCGTGCGTTCCAAAAGTATAATCTTTGTGCTCATGCTCATCGCCAGCATCTATGGGATGATCGTGCTGTTTCTCTACACCGCTGTCGAACGAAATATGGAGAAACAGATTCATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.50,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //